mRNA_H-paniculata_contig7662.15661.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7662.15661.1
Unique NamemRNA_H-paniculata_contig7662.15661.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7662.15661.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.020e-19
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:  154 FKMGNYVLVAHMRKQGPHVKLMSRWTGPWRVVSDDRERVYEAQHLATGETRYVHVVRPRFYADKEFEVSKRVAEGFHHLQHQAGCFVGRTGGVKNTERGGEYVVRVYWQGLDDN 495
            F +G+YV+VA +R+ G   KL S WTGPWRVVS  ++ VY  Q++  G+ R VHV R RFYAD E  V+  + + F H   Q    +     +     G  Y+VRV W G +++
Sbjct:   15 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEED 128
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BLAST of mRNA_H-paniculata_contig7662.15661.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.710e-18
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:  154 FKMGNYVLVAHMRKQGPHVKLMSRWTGPWRVVSDDRERVYEAQHLATGETRYVHVVRPRFYADKEFEVSKRVAEGFHHLQHQAGCFVGRTGGVKNTERGGEYVVRVYWQGLDDN 495
            F +G+YV+VA +R+ G   KL S WTGPWRVVS  ++ VY  Q++  G+ R VHV R RFYAD E  V+  + + F H   Q    +     +     G  Y+VRV W G +++
Sbjct:  270 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEED 383
[Close]
BLAST of mRNA_H-paniculata_contig7662.15661.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 9.590e-18
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1 
Query:  154 FKMGNYVLVAHMRKQGPHVKLMSRWTGPWRVVSDDRERVYEAQHLATGETRYVHVVRPRFYADKEFEVSKRVAEGFHHLQHQAGCFVGRTGGVKNTERGGEYVVRVYWQGLDDN 495
            F +G+YV+VA +R+ G   KL S WTGPWRVVS  ++ VY  Q++  G+ R VHV R RFYAD E  V+  + + F H   Q    +     +     G  Y+VRV W G +++
Sbjct: 1493 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEED 1606
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7662.15661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE1.020e-1940.35Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE4.710e-1840.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE9.590e-1840.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7662contigH-paniculata_contig7662:1691..2408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue5.3e-07
Seed eggNOG ortholog164328.Phyra87090
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGV8@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size718
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7662.15661.1prot_H-paniculata_contig7662.15661.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7662 1829..2221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.3527675-UTR-H-paniculata_contig7662:1690..18281622930947.3527675-UTR-H-paniculata_contig7662:1690..1828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 1691..1828 +
1691481523.0809016-UTR-H-paniculata_contig7662:1690..18281691481523.0809016-UTR-H-paniculata_contig7662:1690..1828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 1691..1828 +
1622930947.3903198-UTR-H-paniculata_contig7662:2221..24081622930947.3903198-UTR-H-paniculata_contig7662:2221..2408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 2222..2408 +
1691481523.1021922-UTR-H-paniculata_contig7662:2221..24081691481523.1021922-UTR-H-paniculata_contig7662:2221..2408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 2222..2408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.3694043-CDS-H-paniculata_contig7662:1828..22211622930947.3694043-CDS-H-paniculata_contig7662:1828..2221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7662 1829..2221 +
1691481523.093237-CDS-H-paniculata_contig7662:1828..22211691481523.093237-CDS-H-paniculata_contig7662:1828..2221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7662 1829..2221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7662.15661.1

>prot_H-paniculata_contig7662.15661.1 ID=prot_H-paniculata_contig7662.15661.1|Name=mRNA_H-paniculata_contig7662.15661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MKLLHFKMGNYVLVAHMRKQGPHVKLMSRWTGPWRVVSDDRERVYEAQHL
ATGETRYVHVVRPRFYADKEFEVSKRVAEGFHHLQHQAGCFVGRTGGVKN
TERGGEYVVRVYWQGLDDNWRMPRRRCGPN*
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mRNA from alignment at H-paniculata_contig7662:1691..2408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7662.15661.1 ID=mRNA_H-paniculata_contig7662.15661.1|Name=mRNA_H-paniculata_contig7662.15661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=718bp|location=Sequence derived from alignment at H-paniculata_contig7662:1691..2408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACGGGTGGCATTTGAGCCGCTCGACCCCGAAAAATTGCAGAGTGCGGC
GAAAAGGATCGCGGAGGCGCAGGAGGAGCGGCGCCCGAACGCTGTGGGGC
ACAAACACACTAGTCGGGCGCAAAGCCGCCCGAGAACTATGAAGCTACTG
CACTTTAAGATGGGCAATTATGTTCTGGTGGCGCACATGCGCAAACAGGG
ACCGCACGTAAAACTGATGAGTCGGTGGACAGGGCCATGGCGAGTGGTGT
CGGATGACCGCGAGCGCGTGTACGAGGCGCAACACCTAGCTACGGGTGAG
ACGCGGTACGTGCATGTGGTGCGCCCGCGCTTTTACGCGGATAAGGAATT
CGAGGTTTCGAAAAGGGTAGCCGAGGGTTTTCACCACCTCCAGCACCAGG
CTGGGTGCTTTGTAGGGCGCACTGGTGGGGTAAAAAACACGGAGCGGGGC
GGTGAGTACGTGGTCCGCGTGTATTGGCAGGGGCTAGATGACAATTGGCG
GATGCCCCGGCGGCGCTGCGGGCCCAACTGAAGACTTCAAAGATGGCCCC
GCGTATGAAACGCGCTCTGAACGCGCGTTATGGGTTGATTGTGTGAGGTA
TGGTTTGGTTTTTAGGGAGAGGTCAACTGTTCAATATTGATGAGGATTTT
AGTTGAATACGCGGGTACCTGTTAGCACGGACTGATATAGGGTTAAAGTT
TTGAGATTTATATGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7662:1691..2408+

>mRNA_H-paniculata_contig7662.15661.1 ID=mRNA_H-paniculata_contig7662.15661.1|Name=mRNA_H-paniculata_contig7662.15661.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig7662:1691..2408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCTACTGCACTTTAAGATGGGCAATTATGTTCTGGTGGCGCACAT
GCGCAAACAGGGACCGCACGTAAAACTGATGAGTCGGTGGACAGGGCCAT
GGCGAGTGGTGTCGGATGACCGCGAGCGCGTGTACGAGGCGCAACACCTA
GCTACGGGTGAGACGCGGTACGTGCATGTGGTGCGCCCGCGCTTTTACGC
GGATAAGGAATTCGAGGTTTCGAAAAGGGTAGCCGAGGGTTTTCACCACC
TCCAGCACCAGGCTGGGTGCTTTGTAGGGCGCACTGGTGGGGTAAAAAAC
ACGGAGCGGGGCGGTGAGTACGTGGTCCGCGTGTATTGGCAGGGGCTAGA
TGACAATTGGCGGATGCCCCGGCGGCGCTGCGGGCCCAACTGAATGAAGC
TACTGCACTTTAAGATGGGCAATTATGTTCTGGTGGCGCACATGCGCAAA
CAGGGACCGCACGTAAAACTGATGAGTCGGTGGACAGGGCCATGGCGAGT
GGTGTCGGATGACCGCGAGCGCGTGTACGAGGCGCAACACCTAGCTACGG
GTGAGACGCGGTACGTGCATGTGGTGCGCCCGCGCTTTTACGCGGATAAG
GAATTCGAGGTTTCGAAAAGGGTAGCCGAGGGTTTTCACCACCTCCAGCA
CCAGGCTGGGTGCTTTGTAGGGCGCACTGGTGGGGTAAAAAACACGGAGC
GGGGCGGTGAGTACGTGGTCCGCGTGTATTGGCAGGGGCTAGATGACAAT
TGGCGGATGCCCCGGCGGCGCTGCGGGCCCAACTGA
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