mRNA_H-paniculata_contig7628.15620.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7628.15620.1
Unique NamemRNA_H-paniculata_contig7628.15620.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7628.15620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7628contigH-paniculata_contig7628:2143..5288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1006
Cds size1002
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7628.15620.1prot_H-paniculata_contig7628.15620.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7628 2143..5286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930941.66279-CDS-H-paniculata_contig7628:2142..22471622930941.66279-CDS-H-paniculata_contig7628:2142..2247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7628 2143..2247 +
1691481520.5872862-CDS-H-paniculata_contig7628:2142..22471691481520.5872862-CDS-H-paniculata_contig7628:2142..2247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7628 2143..2247 +
1622930941.680903-CDS-H-paniculata_contig7628:3713..38291622930941.680903-CDS-H-paniculata_contig7628:3713..3829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7628 3714..3829 +
1691481520.598739-CDS-H-paniculata_contig7628:3713..38291691481520.598739-CDS-H-paniculata_contig7628:3713..3829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7628 3714..3829 +
1622930941.7011592-CDS-H-paniculata_contig7628:4505..52861622930941.7011592-CDS-H-paniculata_contig7628:4505..5286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7628 4506..5286 +
1691481520.6071362-CDS-H-paniculata_contig7628:4505..52861691481520.6071362-CDS-H-paniculata_contig7628:4505..5286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7628 4506..5286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7628.15620.1

>prot_H-paniculata_contig7628.15620.1 ID=prot_H-paniculata_contig7628.15620.1|Name=mRNA_H-paniculata_contig7628.15620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=334bp
DAVLSTHSCVYTHDLDKGEKWVITDNCGAIINRPKEIGEQVQGEIDVSAN
DQGRAGIVFKAGIDVIFQRTLTLRAGQTKILYPDDKLQFDYGDARTVYVV
ASSVHDGAPATMSLQEFSNRKLNSNPKDSDGDMGVVDKMSGPPEDRRVAR
TDMKESEVMDDEDSEDADYEDGMADAETQDEGAVEGASSTEQLPEWECQH
CTFVNFSHSTACEVCYKTTYHKVDRSKRVRCQPSRYRDEQALSILVPTTS
SSKCRKSGGQVAREKRSAADEASTNSDAGSGREEMETSVTGDAVSDDDGA
SGGGEQVHDESSAAGQSRAVAGDRRSTRQRGTRC
back to top

mRNA from alignment at H-paniculata_contig7628:2143..5288+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7628.15620.1 ID=mRNA_H-paniculata_contig7628.15620.1|Name=mRNA_H-paniculata_contig7628.15620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3146bp|location=Sequence derived from alignment at H-paniculata_contig7628:2143..5288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCCGTGTTGTCCACACACAGCTGTGTGTACACGCATGACCTTGACAA
AGGCGAAAAATGGGTGATTACCGATAACTGTGGCGCAATCATCAACAGAC
CGAAGGTACATGTGAGGTTTCGCGTGACATACAATTGGGGCAAAAGTACT
TGAGGTTCCAGCTGGTGTTTTGTTTCTTTGTTGAAGAACGCAAAACGAAT
TTCCCTTTTGCACATTTTGATTTGGTCGTGTATTGCTGGCAGTTATTTCC
TCGTCGCAGATCTCAGCTGACCCATACCAACGTCTCATAACGAAAGGATT
TCCCCCCCCCCCAAAATTCACATTTTTCCATGGGAGGTACATGCTAATAG
TCACTGGTTGCGACAAGGGATTGTTTTTTGACGAGACGTTGGTGTAGGTG
AACTCGGGTCCGGGACGAGGAGGTCATAGTTGGCTGTACACATGACCGAA
CCGAAATTTGCTAAAGGAATTCGTTTTGCGCAAATGCTCTTTCGAAGACC
ATCAATTGCAATGTGTATTGCCGCTTAAATATAGGTCATGTTTGTGTGTG
GCGCCTTTTTCACCAATCAAATTTGTCACATCAAAAATTTTACATACAGT
CGGAACCGTAGGCACAAAGGAAATCTCAAGGGTTCAAATACAGTGGGTAT
CTCGATTTGAAGGGAGGTGGTAACACGACAAAAACGCCCATCTTCGAGAG
ACACACCGCCTTATTACAATCACCATATTATATAGGAAAACGTATCAGCT
CTTGGTTTGGTGACAAGCCGATTTGACCCGTCTTCCCAAAATCTAGTTTC
GCCTTTGATTGGACCGCCTTAAAGTGGGGTTCACACTGCGGTCCCACTTT
TTTTTTCGAAATCTCGCAATTGAAATGCAACCCCCAAGGTCTTCCAGGTA
CAGCACAGGACGAACCAGTCGCACTATCAAACTTCATTTTGTTCGCGGAT
ATTTTGTCATGATCCATTTTTATAGCCAATTAACTATGGTTGAAGAAGGG
ACTTATTTCGGTTAAATAGTAACTTGGTAAATAGTTCATATCGACGATTG
TGTTTGTGTGCAGCAAAGATGTGCCAACATGTGACGCAGTCGGTCAAGAG
AGATCAAATTTACTTTCAGTTGACCATGCACATGTTGTAGTAGGCACGGG
GGGAGACGGAAGAGAATGGGCTAAGGATTGCCGCAAGCAAGGCACCCATC
ACCCTGGGTTTGACTCTATGACCACGACACACGCGGTGCTTCCGCTTGTG
TAACATGTTGAGAGGATTCGTTTCGGCCGTGCTCCAGTGTTTGTCCGCGC
TCCAGTGTTTGTCCGCGCTGTTGAGTCTCTTTATACGTCAAGAGTTGACC
AAGGACATTGTGAACTTGAAAAAGAATTTGTATGTCGACCCGATTATTCG
CAAGAATAAAAATCAAGAAAATCAACCGAAGATGCGGTCTGCTTGCTTGC
TGCCTCTGTGCTGTATGCAAACAGCCGGATTTTCCCCCTCGCATTGGTGT
AAAAGTTGAAGGTTGGCACGGCCGACATTGATGAGGTTTGTTTTCGGGTT
GCTTCTATTTGTTCGAAGCAGGAAATCGGAGAGCAGGTGCAGGGCGAAAT
TGACGTGTCCGCCAACGACCAAGGCCGGGCGGGCATAGTGTTCAAAGCGG
GAATAGATGTCATTTTCCAACGGACGCTGACGCTGAGGTGAGAGCACACA
CGCCCTCGGCGCATGAGGAACTGAACGTGTTGCATGTAGCTGGCACCATT
CTCAGCATATCGTACTTTGCCCACTGATCGATTTCATTGCGGAAGGATTT
GGTTTCCGGGTCGGGCCGAGTCTACGGACGGACTGTGGCGTATCTTTTGT
GCACACAACGACTCAGTCATGAATGCATGTGGTCATGAGTTTTTTACTCG
CGTATTGTGTGGTGACATCTCATTTCTCGTTTTTTGAACGCTTTAGTTGC
GTCGGATCACATGCATGACGGATGCACATGTGCACACGGCCTATCAGGGT
GCTCGTCGCCGTTTTGCGTGTCTGCCAGAGGTTTTCGACCATGTACTGTA
GCCCTTTCCGGTAGCGAGCGTGGGCTAGACGTACGCCCGAAGACTTTAAA
GCTTCTATTATGCCTCCTCAATCATCCAGTAGTGCACGTGGCGGTTTCGA
TTCTGATTTGCTCCCACGACGTGAATGCTCTGAGTGGTTTGAGAGGCGGA
TGAAGTCGGTATGCACCTAACGCGGCGTTGGTTTGACTCAAGTCAACCGC
CCAACACTCGTGGGTGTGTGTTTCTTTCCACGCCATCGTCGGCTCTGGGT
TTTGTCTTACGTCCGGACGTCTTTTCTGCCCCGCCCCCTCCTTGTGCTGA
AACTCTCTGGTAGGGCTGGTCAGACCAAAATATTATACCCTGACGACAAG
CTCCAGTTCGACTACGGGGATGCACGGACAGTATACGTTGTTGCGTCCAG
CGTGCATGACGGGGCACCGGCGACCATGTCCCTGCAGGAGTTTTCGAACC
GGAAATTGAACTCCAATCCAAAAGACAGCGACGGTGACATGGGTGTTGTT
GACAAGATGTCGGGACCTCCCGAAGATCGTCGTGTCGCTCGCACTGACAT
GAAGGAGTCGGAGGTAATGGATGATGAAGATTCCGAAGACGCCGACTACG
AGGACGGTATGGCAGACGCGGAGACTCAAGACGAAGGAGCGGTGGAAGGT
GCTAGCTCTACCGAGCAGCTGCCCGAGTGGGAATGCCAGCACTGCACCTT
TGTAAACTTTTCACACTCTACCGCGTGCGAAGTGTGCTATAAAACCACGT
ATCACAAGGTCGACCGAAGCAAACGAGTCAGATGCCAACCGAGTCGCTAC
AGAGATGAGCAGGCGTTGAGCATATTGGTGCCAACTACTAGTAGTAGCAA
ATGTCGAAAGTCAGGGGGACAGGTGGCGCGCGAAAAGCGATCTGCCGCGG
ACGAAGCATCCACCAACTCGGACGCCGGCAGCGGGAGGGAGGAGATGGAA
ACCAGTGTGACCGGAGACGCTGTGTCTGATGACGATGGGGCGAGCGGGGG
AGGTGAACAAGTGCACGACGAGTCGAGTGCAGCTGGCCAATCAAGGGCGG
TGGCGGGAGACCGGCGTTCTACACGACAAAGAGGAACACGATGCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7628:2143..5288+

>mRNA_H-paniculata_contig7628.15620.1 ID=mRNA_H-paniculata_contig7628.15620.1|Name=mRNA_H-paniculata_contig7628.15620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at H-paniculata_contig7628:2143..5288+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCCGTGTTGTCCACACACAGCTGTGTGTACACGCATGACCTTGACAA
AGGCGAAAAATGGGTGATTACCGATAACTGTGGCGCAATCATCAACAGAC
CGAAGGATGCCGTGTTGTCCACACACAGCTGTGTGTACACGCATGACCTT
GACAAAGGCGAAAAATGGGTGATTACCGATAACTGTGGCGCAATCATCAA
CAGACCGAAGGAAATCGGAGAGCAGGTGCAGGGCGAAATTGACGTGTCCG
CCAACGACCAAGGCCGGGCGGGCATAGTGTTCAAAGCGGGAATAGATGTC
ATTTTCCAACGGACGCTGACGCTGAGGAAATCGGAGAGCAGGTGCAGGGC
GAAATTGACGTGTCCGCCAACGACCAAGGCCGGGCGGGCATAGTGTTCAA
AGCGGGAATAGATGTCATTTTCCAACGGACGCTGACGCTGAGGGCTGGTC
AGACCAAAATATTATACCCTGACGACAAGCTCCAGTTCGACTACGGGGAT
GCACGGACAGTATACGTTGTTGCGTCCAGCGTGCATGACGGGGCACCGGC
GACCATGTCCCTGCAGGAGTTTTCGAACCGGAAATTGAACTCCAATCCAA
AAGACAGCGACGGTGACATGGGTGTTGTTGACAAGATGTCGGGACCTCCC
GAAGATCGTCGTGTCGCTCGCACTGACATGAAGGAGTCGGAGGTAATGGA
TGATGAAGATTCCGAAGACGCCGACTACGAGGACGGTATGGCAGACGCGG
AGACTCAAGACGAAGGAGCGGTGGAAGGTGCTAGCTCTACCGAGCAGCTG
CCCGAGTGGGAATGCCAGCACTGCACCTTTGTAAACTTTTCACACTCTAC
CGCGTGCGAAGTGTGCTATAAAACCACGTATCACAAGGTCGACCGAAGCA
AACGAGTCAGATGCCAACCGAGTCGCTACAGAGATGAGCAGGCGTTGAGC
ATATTGGTGCCAACTACTAGTAGTAGCAAATGTCGAAAGTCAGGGGGACA
GGTGGCGCGCGAAAAGCGATCTGCCGCGGACGAAGCATCCACCAACTCGG
ACGCCGGCAGCGGGAGGGAGGAGATGGAAACCAGTGTGACCGGAGACGCT
GTGTCTGATGACGATGGGGCGAGCGGGGGAGGTGAACAAGTGCACGACGA
GTCGAGTGCAGCTGGCCAATCAAGGGCGGTGGCGGGAGACCGGCGTTCTA
CACGACAAAGAGGAACACGATGCGGCTGGTCAGACCAAAATATTATACCC
TGACGACAAGCTCCAGTTCGACTACGGGGATGCACGGACAGTATACGTTG
TTGCGTCCAGCGTGCATGACGGGGCACCGGCGACCATGTCCCTGCAGGAG
TTTTCGAACCGGAAATTGAACTCCAATCCAAAAGACAGCGACGGTGACAT
GGGTGTTGTTGACAAGATGTCGGGACCTCCCGAAGATCGTCGTGTCGCTC
GCACTGACATGAAGGAGTCGGAGGTAATGGATGATGAAGATTCCGAAGAC
GCCGACTACGAGGACGGTATGGCAGACGCGGAGACTCAAGACGAAGGAGC
GGTGGAAGGTGCTAGCTCTACCGAGCAGCTGCCCGAGTGGGAATGCCAGC
ACTGCACCTTTGTAAACTTTTCACACTCTACCGCGTGCGAAGTGTGCTAT
AAAACCACGTATCACAAGGTCGACCGAAGCAAACGAGTCAGATGCCAACC
GAGTCGCTACAGAGATGAGCAGGCGTTGAGCATATTGGTGCCAACTACTA
GTAGTAGCAAATGTCGAAAGTCAGGGGGACAGGTGGCGCGCGAAAAGCGA
TCTGCCGCGGACGAAGCATCCACCAACTCGGACGCCGGCAGCGGGAGGGA
GGAGATGGAAACCAGTGTGACCGGAGACGCTGTGTCTGATGACGATGGGG
CGAGCGGGGGAGGTGAACAAGTGCACGACGAGTCGAGTGCAGCTGGCCAA
TCAAGGGCGGTGGCGGGAGACCGGCGTTCTACACGACAAAGAGGAACACG
ATGC
back to top