mRNA_H-paniculata_contig7573.15559.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7573.15559.1
Unique NamemRNA_H-paniculata_contig7573.15559.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.230e-17
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   25 DSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLLKNSWEMV 231
            D L WW+    DFP LA LARR+LAIPAT A+ ER FS AG I+TK RN L    ++LLVLL++SW++V
Sbjct:  222 DPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 290          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-15
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   31 LQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLLKNS 219
            L+WW+  + ++P LA+LARR+L IPA  AQ ER FSSAGL++TKTR R+D +N+ L+V L+N+
Sbjct:  481 LEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.910e-15
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   31 LQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLLKNSWEMV 231
            L  W++   ++PLLAALARR+LAIP++ AQ ER FS+AGL +T TR+RL  +N++LLV L+N W +V
Sbjct:  484 LDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVV 550          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 72.0 bits (175), Expect = 4.970e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 ENGTARDTDSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLL 201
            EN  +++T+ + WWK +   FPLLAA+AR LLAIPAT    ER FS+AG I+ + R+RL S+N+++L
Sbjct:   94 ENVVSQNTNVISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEML 160          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.320e-14
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 NGTARD---TDSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLLKNSWEMV 231
            NG+  D      LQWWK++  ++P +  LA+R+L++PAT A  ER FS A LI TK R  L  DN+++LV LK +++++
Sbjct:   83 NGSNADKGFNSPLQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLI 161          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: UPI0005F55F89 (zinc finger BED domain-containing protein 1-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F55F89)

HSP 1 Score: 73.6 bits (179), Expect = 6.920e-14
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   19 DTDSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLL 210
            D D L+WWK  +  FP LA LAR+ L+IPAT A  ERTFS+AG I+T  RN L  +N+++LV L
Sbjct:  205 DLDYLEWWKTRADKFPALAILARKYLSIPATSASAERTFSTAGNIVTPKRNCLSPENVNMLVFL 268          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.980e-14
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   52 SGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLLKNSWEMV 231
            S DFP LA LARR+LAIPAT A+ ER FS AG I+TK RN L    ++LLVLL++SW++V
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIV 210          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 ENGTARDTDSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLL 210
            EN   + TD + WWK +   FP+LAA+AR+ LAIPAT    ER FS AG I+T TR++L  +N++ L  L
Sbjct:    8 ENVVPKTTDIIDWWKCNVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKLCFL 77          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: A0A6G0WVR8_APHCR (Zinc finger protein 618-like n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0WVR8_APHCR)

HSP 1 Score: 73.6 bits (179), Expect = 1.580e-13
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   25 DSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLLKNSWE 225
            D LQWWKEHS   PL+A LA R+LAIPA+ A  ER+FS++G +I + R RL  D +D L+ L + ++
Sbjct:  348 DILQWWKEHSDKLPLMAKLASRILAIPASSAASERSFSTSGKVIEERRTRLKGDTVDSLLFLNDFFK 414          
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Match: A0A7S3PUA6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUA6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.070e-13
Identity = 34/79 (43.04%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 NGTARD---TDSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGLIITKTRNRLDSDNLDLLVLLKNSWEMV 231
            NG+  D      LQWWK++  ++P +  LA+R+L++PAT A  ER FS A LI TK R  L  DN+++LV LK +++++
Sbjct:  150 NGSNADKGFNSPLQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLI 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7573.15559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.230e-1757.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.150e-1555.56Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI3.910e-1555.22Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI000EAB1B8F4.970e-1450.75zinc finger BED domain-containing protein 1-like n... [more]
A0A7S3PTX0_9STRA6.320e-1443.04Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
UPI0005F55F896.920e-1454.69zinc finger BED domain-containing protein 1-like n... [more]
A0A6H5JPB0_9PHAE6.980e-1461.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A151I7P1_9HYME1.040e-1348.57Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A6G0WVR8_APHCR1.580e-1350.75Zinc finger protein 618-like n=1 Tax=Aphis cracciv... [more]
A0A7S3PUA6_9STRA2.070e-1343.04Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7573contigH-paniculata_contig7573:8673..8903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue2.9e-13
Seed eggNOG ortholog2880.D7G5Z0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930931.8200293-CDS-H-paniculata_contig7573:8672..89031622930931.8200293-CDS-H-paniculata_contig7573:8672..8903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7573 8673..8903 -
1691481515.9605637-CDS-H-paniculata_contig7573:8672..89031691481515.9605637-CDS-H-paniculata_contig7573:8672..8903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7573 8673..8903 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7573.15559.1prot_H-paniculata_contig7573.15559.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7573 8673..8903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7573.15559.1

>prot_H-paniculata_contig7573.15559.1 ID=prot_H-paniculata_contig7573.15559.1|Name=mRNA_H-paniculata_contig7573.15559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
ENGTARDTDSLQWWKEHSGDFPLLAALARRLLAIPATHAQPERTFSSAGL
IITKTRNRLDSDNLDLLVLLKNSWEMV
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mRNA from alignment at H-paniculata_contig7573:8673..8903-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7573.15559.1 ID=mRNA_H-paniculata_contig7573.15559.1|Name=mRNA_H-paniculata_contig7573.15559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig7573:8673..8903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAACGGTACCGCCCGCGACACCGACTCCCTCCAGTGGTGGAAGGAACA CTCCGGCGACTTTCCTCTGCTCGCGGCACTTGCCCGGCGCTTACTCGCCA TCCCAGCAACACATGCACAACCCGAACGCACATTCTCGAGTGCGGGGCTG ATTATTACCAAGACACGCAACAGACTGGACTCGGACAACCTCGACCTACT GGTGTTGCTCAAGAACTCGTGGGAAATGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig7573:8673..8903-

>mRNA_H-paniculata_contig7573.15559.1 ID=mRNA_H-paniculata_contig7573.15559.1|Name=mRNA_H-paniculata_contig7573.15559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig7573:8673..8903- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAACGGTACCGCCCGCGACACCGACTCCCTCCAGTGGTGGAAGGAACA
CTCCGGCGACTTTCCTCTGCTCGCGGCACTTGCCCGGCGCTTACTCGCCA
TCCCAGCAACACATGCACAACCCGAACGCACATTCTCGAGTGCGGGGCTG
ATTATTACCAAGACACGCAACAGACTGGACTCGGACAACCTCGACCTACT
GGTGTTGCTCAAGAACTCGTGGGAAATGGTCGAGAACGGTACCGCCCGCG
ACACCGACTCCCTCCAGTGGTGGAAGGAACACTCCGGCGACTTTCCTCTG
CTCGCGGCACTTGCCCGGCGCTTACTCGCCATCCCAGCAACACATGCACA
ACCCGAACGCACATTCTCGAGTGCGGGGCTGATTATTACCAAGACACGCA
ACAGACTGGACTCGGACAACCTCGACCTACTGGTGTTGCTCAAGAACTCG
TGGGAAATGGTC
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