mRNA_H-paniculata_contig75692.15554.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75692.15554.1
Unique NamemRNA_H-paniculata_contig75692.15554.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A835CGR3_9FABA (BURP domain-containing protein BNM2A-like n=1 Tax=Senna tora TaxID=362788 RepID=A0A835CGR3_9FABA)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-8
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   61 WVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            W++DSGAS+H+T N   +  +R PVTG+N V L DGS+K V F+G  ++  +        + V ++PE  +NL S+ K+
Sbjct:   44 WIIDSGASSHVTGNVELLENLR-PVTGKNTVTLPDGSVKTVTFIGNAEVSKNLKL-----VNVLFVPEFKYNLISVGKL 116          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A834W7H2_9FABA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834W7H2_9FABA)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-7
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   16 LTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIE---VSYLPELNFNLFSLHKI 297
            L+N N   Y   SN WV+DSGAS+H+T N   ++ + K + G+N V L DGS+K+V+ +G        TT +   +    V Y+PE  +NL S+ K+
Sbjct:  374 LSNAN---YIQGSNKWVIDSGASSHVTGNVELLHDL-KVIRGKNTVTLPDGSVKVVKSMG--------TTMINGCLRLDNVLYVPEFRYNLISVSKL 458          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A834X1J2_9FABA (Ribonuclease H n=1 Tax=Senna tora TaxID=362788 RepID=A0A834X1J2_9FABA)

HSP 1 Score: 57.8 bits (138), Expect = 1.460e-7
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   16 LTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            L+N N   Y   SN WV+DSGAS+H+T N   ++ + K + G+N V L DGS+K+V+ +G   +      D      V Y+PE  +NL S+ K+
Sbjct: 1877 LSNAN---YIQGSNKWVIDSGASSHVTGNVELLHDL-KVIRGKNTVTLPDGSVKIVKSMGTAKINGCLRLD-----NVLYVPEFRYNLISVSKL 1961          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A834SFF7_9FABA (Putative mitochondrial protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834SFF7_9FABA)

HSP 1 Score: 55.5 bits (132), Expect = 8.950e-7
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   61 WVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNL 279
            W+VDSGAS+H+T N   ++  RKP  G+N V L DG +K+VE +G++ ++   T +      V ++P+  +NL
Sbjct:  414 WIVDSGASSHVTGNKLLLFDTRKP-KGKNTVQLPDGVVKVVELIGRVKVMEGITLE-----NVLFVPDFKYNL 480          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A2N9I442_FAGSY (Integrase catalytic domain-containing protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I442_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-6
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   10 IALTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            + + + N  ++  SS +WV+DSGAS+HMT N S +     P +  + V + +G+   V+  G +      TT     ++V YLPE  FNL S+HK+
Sbjct:  227 LLIASGNTCLHSSSSPSWVIDSGASDHMTGNSSLLSHTSSPCS-PSFVTVANGTKTPVQGKGTV------TTSDLTLLDVLYLPEFPFNLLSVHKL 315          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A2N9J799_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J799_FAGSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.280e-6
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   16 LTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            + + N  ++  SS +WV+DSGAS+HMT N S +  I  P +  + V + +G+  +V+ +G +     ST ++  +  V YLPE  FNL S+HK+
Sbjct:  502 VASGNTCLHSSSSPSWVIDSGASDHMTGNSSLLSNISNPCSPFS-VTVANGTKTLVQGIGTV-----STPNLTFS-NVLYLPEFPFNLLSVHKL 588          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A834XJK6_9FABA (Retrotran_gag_3 domain-containing protein n=1 Tax=Senna tora TaxID=362788 RepID=A0A834XJK6_9FABA)

HSP 1 Score: 54.3 bits (129), Expect = 2.300e-6
Identity = 29/79 (36.71%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   61 WVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            W++D+GAS+H+T N S ++   K V G + V L DGS+K V  +G  +++ +S   +    +V Y+PE  +NL S+H++
Sbjct:  401 WIIDTGASSHITGNMS-LFSQIKEVKGSHTVNLPDGSVKNVSHIG--EVVINSKILLK---DVLYVPEFRYNLISVHRL 473          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A2N9EXY3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EXY3_FAGSY)

HSP 1 Score: 53.9 bits (128), Expect = 2.310e-6
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   10 IALTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            + + + N  ++  SS +WV+DSGAS+HMT N S +     P +  + V + +G+   V+  G +     +T+D+  + +V YLPE  FNL S+HK+
Sbjct:  100 LLIASGNTCLHSSSSPSWVIDSGASDHMTGNSSLLSHTSSPCS-PSFVTVANGTKTPVQGKGTV-----TTSDLTLS-DVLYLPEFPFNLLSVHKL 188          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A835CC59_9FABA (Retrotran_gag_3 domain-containing protein n=2 Tax=Senna tora TaxID=362788 RepID=A0A835CC59_9FABA)

HSP 1 Score: 54.3 bits (129), Expect = 2.320e-6
Identity = 37/94 (39.36%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   16 LTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            +T  + T   GS + WV+DSGAS+H+T N   +  IR  V G N V L DGS+K V  VG + L     +D      V Y+P+  +NL S+ K+
Sbjct:  378 ITLSSSTYIQGS-DKWVIDSGASSHVTGNVHFLTDIRL-VRGLNTVTLPDGSVKYVSSVGTVCL-----SDAFQLKNVLYVPDFRYNLISVSKL 464          
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Match: A0A2N9HWE0_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HWE0_FAGSY)

HSP 1 Score: 53.9 bits (128), Expect = 3.170e-6
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   10 IALTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENMVMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI 297
            + + + N  ++  SS +WV+DSGAS+HMT N S +     P +  + V + +G+   V+  G +     +T+D+  + +V YLPE  FNL S+HK+
Sbjct:  151 LLIASGNTCLHSSSSPSWVIDSGASDHMTGNSSLLSHTSSPCS-PSFVTVANGTKTPVQGKGTV-----TTSDLTLS-DVLYLPEFPFNLLSVHKL 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75692.15554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835CGR3_9FABA1.160e-839.24BURP domain-containing protein BNM2A-like n=1 Tax=... [more]
A0A834W7H2_9FABA1.420e-738.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A834X1J2_9FABA1.460e-738.30Ribonuclease H n=1 Tax=Senna tora TaxID=362788 Rep... [more]
A0A834SFF7_9FABA8.950e-738.36Putative mitochondrial protein n=1 Tax=Senna tora ... [more]
A0A2N9I442_FAGSY1.270e-634.38Integrase catalytic domain-containing protein n=3 ... [more]
A0A2N9J799_FAGSY1.280e-636.17Integrase catalytic domain-containing protein n=2 ... [more]
A0A834XJK6_9FABA2.300e-636.71Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
A0A2N9EXY3_FAGSY2.310e-634.38Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A835CC59_9FABA2.320e-639.36Retrotran_gag_3 domain-containing protein n=2 Tax=... [more]
A0A2N9HWE0_FAGSY3.170e-634.38Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75692contigH-paniculata_contig75692:19..315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.8948197-CDS-H-paniculata_contig75692:18..3151622930930.8948197-CDS-H-paniculata_contig75692:18..315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75692 19..315 +
1691481515.5487502-CDS-H-paniculata_contig75692:18..3151691481515.5487502-CDS-H-paniculata_contig75692:18..315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75692 19..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75692.15554.1prot_H-paniculata_contig75692.15554.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75692 19..315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75692.15554.1

>prot_H-paniculata_contig75692.15554.1 ID=prot_H-paniculata_contig75692.15554.1|Name=mRNA_H-paniculata_contig75692.15554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
GLPIALTNQNPTIYHGSSNTWVVDSGASNHMTNNPSEMYGIRKPVTGENM
VMLGDGSIKMVEFVGKLDLIFHSTTDVPATIEVSYLPELNFNLFSLHKI
back to top

mRNA from alignment at H-paniculata_contig75692:19..315+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75692.15554.1 ID=mRNA_H-paniculata_contig75692.15554.1|Name=mRNA_H-paniculata_contig75692.15554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig75692:19..315+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTGCCTATAGCCTTGACGAACCAAAATCCAACAATTTACCATGGATC CAGCAATACGTGGGTGGTTGATTCCGGTGCAAGTAATCACATGACGAACA ATCCTTCAGAAATGTATGGTATTCGTAAGCCGGTAACAGGGGAAAATATG GTAATGTTGGGGGATGGATCGATTAAGATGGTGGAGTTTGTGGGAAAGTT GGATTTGATTTTTCACTCCACTACTGACGTGCCTGCCACAATTGAAGTAT CATACTTACCAGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig75692:19..315+

>mRNA_H-paniculata_contig75692.15554.1 ID=mRNA_H-paniculata_contig75692.15554.1|Name=mRNA_H-paniculata_contig75692.15554.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig75692:19..315+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTGCCTATAGCCTTGACGAACCAAAATCCAACAATTTACCATGGATC
CAGCAATACGTGGGTGGTTGATTCCGGTGCAAGTAATCACATGACGAACA
ATCCTTCAGAAATGTATGGTATTCGTAAGCCGGTAACAGGGGAAAATATG
GTAATGTTGGGGGATGGATCGATTAAGATGGTGGAGTTTGTGGGAAAGTT
GGATTTGATTTTTCACTCCACTACTGACGTGCCTGCCACAATTGAAGTAT
CATACTTACCAGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATCGGT
TTGCCTATAGCCTTGACGAACCAAAATCCAACAATTTACCATGGATCCAG
CAATACGTGGGTGGTTGATTCCGGTGCAAGTAATCACATGACGAACAATC
CTTCAGAAATGTATGGTATTCGTAAGCCGGTAACAGGGGAAAATATGGTA
ATGTTGGGGGATGGATCGATTAAGATGGTGGAGTTTGTGGGAAAGTTGGA
TTTGATTTTTCACTCCACTACTGACGTGCCTGCCACAATTGAAGTATCAT
ACTTACCAGAGTTGAACTTCAACCTTTTTTCCCTCCACAAAATC
back to top