mRNA_H-paniculata_contig7567.15551.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7567.15551.1
Unique NamemRNA_H-paniculata_contig7567.15551.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7567.15551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7567contigH-paniculata_contig7567:1387..5027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1226
Cds size681
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7567.15551.1prot_H-paniculata_contig7567.15551.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7567 4347..5027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.6450028-UTR-H-paniculata_contig7567:1386..15321622930930.6450028-UTR-H-paniculata_contig7567:1386..1532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7567 1387..1532 +
1691481515.428469-UTR-H-paniculata_contig7567:1386..15321691481515.428469-UTR-H-paniculata_contig7567:1386..1532Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7567 1387..1532 +
1622930930.6596136-UTR-H-paniculata_contig7567:3413..34551622930930.6596136-UTR-H-paniculata_contig7567:3413..3455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7567 3414..3455 +
1691481515.4377956-UTR-H-paniculata_contig7567:3413..34551691481515.4377956-UTR-H-paniculata_contig7567:3413..3455Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7567 3414..3455 +
1622930930.6760294-UTR-H-paniculata_contig7567:3989..43461622930930.6760294-UTR-H-paniculata_contig7567:3989..4346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7567 3990..4346 +
1691481515.447615-UTR-H-paniculata_contig7567:3989..43461691481515.447615-UTR-H-paniculata_contig7567:3989..4346Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7567 3990..4346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.6931617-CDS-H-paniculata_contig7567:4346..50271622930930.6931617-CDS-H-paniculata_contig7567:4346..5027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7567 4347..5027 +
1691481515.4587834-CDS-H-paniculata_contig7567:4346..50271691481515.4587834-CDS-H-paniculata_contig7567:4346..5027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7567 4347..5027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7567.15551.1

>prot_H-paniculata_contig7567.15551.1 ID=prot_H-paniculata_contig7567.15551.1|Name=mRNA_H-paniculata_contig7567.15551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MRRNNGERSRNNRSCSREDTPPRVFSPCPSSSARSDGSGSGSGGGGRRDR
QKQERRSVDGGGGVVSNREKKRGGSDVGGKNDGRNGSGRGGGSGGNRRRR
GGQVKRRKKRTGQDKERAGASSEGRGNGNARWLGREEAEKPRRRAEKGDR
KHGGAVTEADDFSSGGEDRDDDAGARDGADAGEGSGGGDGSGAAGGWPGR
GIDQVWNLESRRKKEMEEEERKRTRKE
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mRNA from alignment at H-paniculata_contig7567:1387..5027+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7567.15551.1 ID=mRNA_H-paniculata_contig7567.15551.1|Name=mRNA_H-paniculata_contig7567.15551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3641bp|location=Sequence derived from alignment at H-paniculata_contig7567:1387..5027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATGGATTCTGGACAATGACAGGATTAATCGATTTAGTTGTTCAGTCA
TGAGAAATGATAACGAACTTATCCCAGCTGACGCCGAAGGAGGGGCGACT
ACACTGACAGAGAGAGACGCATTGGTCAACTTAGGGGGCGGAATGGGTGA
GTGTGGGCAAGTCAAGCTCTGGTGACAAACCGGGGTGATGATAATGCGGG
AGACTAAATAGTGCGTTAGCGCTACGACACGAACTGAGGTAGGAGAGATC
TAATTGTGTGCCCGAGATCATGAGCTTTATGCTGCGAAATATACGACGGA
TTTTGATAAAGCGAGCTATATCAACGACTTAATGCGCAGTTCAAAAGTAC
TTGGAAATTTTTCACGGGTCATGTTTGACTGTACCGTCTGTAATTACAAT
AGTTAAGGGTTGTTGGTTAAAAAGACAATTTCAAACAAACACGGAATGAG
TCATGGAGTGACGTCTGCTCGAGTATCACGAGGGATTACCACAAGTATAG
CATGAGACCCGGGGAGCTCGCATTTGCAAGCGGCAGACACGTGGGGCGTA
ACCGCCGTTTCACTACACTGCGTCCAGCAATGGTTTACCCCGTTGTTTGC
GCTTCGTAACCTAGAGCTTCAGTCAACGATATCTCGACGTAGATATGAAA
GACTGTAAAAATTCCAAGTGCTCTGCAAACCTGTCATGCACAGCTATCAG
CTCGCAAAATCCCAAAGTCATCTACACTGCGAGCCAAGCTAGCGGTCGAC
CCAGGCCGATGAGTATTTAGTCCTAAACCTTTGCCATCTCTTGTTGTTAT
GCATCCAGTCTTACATTTCAAATGCACTGTAGTTGTAAAATGTGTTCGTG
TGCGTATTGGTACATTCCGAGATATATTCGCGATCGGCGCTCCTGGACGA
GAAGTTGGAATATGACGCGAACCTTTGTACAATCGGCGAATATATTTTCC
AAACTTCAAGACCATATACACAAGCCTGTTGTTCGCTGGGGTAGAGATGT
AGTCGAGCACAACTTCTGGAAGAAGGTAGCTGTGGAGGATGACTACCACA
GTGTACCAGCGGCTGCGCGTTTCCCTCCTTTACCGTGTTTTTTTACTCCG
CCGAGTAAAAATCTCGCAGGGGGTCACATACATACGTTATCTTGACAATT
ACTTCATTTCTAAAACACATTTCTTCTTTTCTATGGGGTCGCTGAGATCG
CTGCATTTTTCGGCCATTGCCAGCGCAGCATTTTCCTTGGTTCGTTTTCC
GGTTTGCGTTGTTTCCTCTGCGGTTCGCTTCTATTTATACATTCTGCATA
TTTGTTCGGGCGTTCATTTTCGGTTCGTCATTTCGTTGGTTCTGCGTGTC
AGTGCAGCATATACGACTGCTTGATTGCTTAATGCAGTGCGTACTCAGTC
GCTTTTCCTGGCACGGGAGCACCGGTGCATGACGTAGAATAGCACCCCCC
CCCCGGACAAGTACGAATACTTGGAGGTGGTTTTCACACAAAAACTGAAA
GATATACAAGTGGAAATCGGCCTTTTATTTTCCCTATTGTATCGATATAT
CGTAATATAACGCGTAATATTTCGTTACGAGATACATCGTGTCTTGTCGA
ATATTCTGAAAAAAAATCCGAAAATGTAGGAATATGGTATCGGATGCAAA
AAACAATATTTCCAACATTTGCTGCCGGCAAAGACTTCGCCAGTATATTC
GAAGGAACAAGTATAGTCACGGCTTCGCCAATGCACGGTTTCTCCGCGGC
ACAAGCGAAACGACTTGCTGAGCTCACGAATCGCCCGCTACTGTCGCACG
TACAGTAGGCGCACTGCCCATAATTATTCTCATTTAGAAGCTATTTGAGT
GCGGAGTGGATTATCTGTTCTGGAATGACTACAACCGCAGTCACTTTAGC
GTATTGATCATTACAGGTACGCCTGATTCCTCAGCCGAAACACACAAAGC
GAATCCTACCGACGCCCCCCGAATCCATTGTTCCTGTTGCTGGAATTTTC
TCGGATGTTTCGGCGCTGTTCCGGCAGTGGCAGAAGAACAAACGTAGTGG
AGATGTCTCGGCTTCTGAGGTAAGTTCGTGACTGTTCACTGATATTTTGG
AGTATGAATGCAGCATTGCCAGAGAGAAACATAGGTATATATATATATAT
ATATAGAGAGAGAGAGAGAAAGATAAATACATGGGGGCGGGGAACTGTCC
ACTGGCGCAACCGTCCGGCAGCTGCTATTTTTTTCGTCTATCCAATGTGG
TTCTTGTTTACATTTCTTGTCATGGTGATTGCTATACGTGCAAGTGGCAA
ACACTACTGTTCTGTGCTTTCTTGCAAAATTCTGTCAGGTTGCTGAAGTA
GTAAGGCTAATTTAGGTAGTTTTGCACTTTTTGCGGGCCAAGTTCCCCCC
CCCGCGTGGACCCGATAAAATTACTTCATGTCTGTTCGATCCGGCTGCTT
GTAGAGACTTTCTGTTTTTTCACCAGAGCGCCGTCCATTTCGTTTTTTTA
ACAATCCTGGTTATCACTACGATACTCTGTATTGTCGATCACTAATATTT
CTTGGAGTTAGACCTCCCCGCGCGCGGGACTTGTGCCTCTGTTGCAATCT
TAGCGCCGGCAGGGATTGACGCAAAAGGACGGGCGGGGCGACGCCGGCAA
GAACCCTCGCAGCGGCGGCAGCAGGGACAGGAACCATGACGGTAATAGAG
GGGAACACAGTCGGCGAGATCGAAGCAGAGGTCGAGGAGGCAGGAGTCGT
GACGGATCCCGGGACCGGGGCGAGGGTAGAAGCGTTGGGAGTGTTCGAAG
CGACGCCAACCATGATAGCAGAAGCGGGGACAGCTATAGGGACAGGGACT
ACAACCAAAGCAGCAGCAACAGCAGCAGCAACAGCAGAGTGAGAGAAAGG
CGCGGCAGCAACAACCGCAGAGGTGGTCGCTCCCGATCTCGGGATGATAG
GAGCGTGCAGATGCGAAGGAACAACGGAGAGCGAAGCCGCAACAACCGCA
GCTGCAGTCGGGAGGATACCCCTCCGCGTGTGTTTTCTCCTTGTCCTTCG
TCTTCTGCACGCAGTGATGGCAGCGGCAGCGGAAGCGGCGGCGGCGGGAG
ACGAGACAGACAGAAACAAGAACGGAGGTCGGTCGACGGAGGCGGCGGCG
TCGTAAGCAATCGAGAGAAGAAGCGGGGCGGAAGTGATGTCGGCGGCAAA
AACGACGGGAGAAATGGTAGCGGACGTGGCGGTGGCAGTGGCGGTAATCG
GAGAAGACGTGGCGGTCAAGTCAAAAGGAGGAAGAAGAGAACCGGCCAAG
ACAAGGAGAGGGCGGGCGCGTCGAGTGAAGGGCGGGGGAACGGTAACGCG
AGATGGCTCGGCCGGGAAGAGGCTGAAAAACCCAGAAGGCGCGCCGAGAA
GGGAGATAGGAAGCACGGAGGAGCTGTGACGGAAGCCGACGATTTCAGCT
CCGGGGGTGAAGATAGAGATGATGATGCCGGCGCGCGTGATGGTGCTGAT
GCCGGCGAGGGCAGCGGCGGGGGAGATGGGAGCGGGGCAGCGGGAGGTTG
GCCTGGCAGAGGAATCGACCAAGTGTGGAATCTCGAAAGCCGGAGAAAGA
AGGAGATGGAGGAGGAGGAGAGGAAGCGAACTAGAAAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7567:1387..5027+

>mRNA_H-paniculata_contig7567.15551.1 ID=mRNA_H-paniculata_contig7567.15551.1|Name=mRNA_H-paniculata_contig7567.15551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig7567:1387..5027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGAAGGAACAACGGAGAGCGAAGCCGCAACAACCGCAGCTGCAGTCG
GGAGGATACCCCTCCGCGTGTGTTTTCTCCTTGTCCTTCGTCTTCTGCAC
GCAGTGATGGCAGCGGCAGCGGAAGCGGCGGCGGCGGGAGACGAGACAGA
CAGAAACAAGAACGGAGGTCGGTCGACGGAGGCGGCGGCGTCGTAAGCAA
TCGAGAGAAGAAGCGGGGCGGAAGTGATGTCGGCGGCAAAAACGACGGGA
GAAATGGTAGCGGACGTGGCGGTGGCAGTGGCGGTAATCGGAGAAGACGT
GGCGGTCAAGTCAAAAGGAGGAAGAAGAGAACCGGCCAAGACAAGGAGAG
GGCGGGCGCGTCGAGTGAAGGGCGGGGGAACGGTAACGCGAGATGGCTCG
GCCGGGAAGAGGCTGAAAAACCCAGAAGGCGCGCCGAGAAGGGAGATAGG
AAGCACGGAGGAGCTGTGACGGAAGCCGACGATTTCAGCTCCGGGGGTGA
AGATAGAGATGATGATGCCGGCGCGCGTGATGGTGCTGATGCCGGCGAGG
GCAGCGGCGGGGGAGATGGGAGCGGGGCAGCGGGAGGTTGGCCTGGCAGA
GGAATCGACCAAGTGTGGAATCTCGAAAGCCGGAGAAAGAAGGAGATGGA
GGAGGAGGAGAGGAAGCGAACTAGAAAAGAGATGCGAAGGAACAACGGAG
AGCGAAGCCGCAACAACCGCAGCTGCAGTCGGGAGGATACCCCTCCGCGT
GTGTTTTCTCCTTGTCCTTCGTCTTCTGCACGCAGTGATGGCAGCGGCAG
CGGAAGCGGCGGCGGCGGGAGACGAGACAGACAGAAACAAGAACGGAGGT
CGGTCGACGGAGGCGGCGGCGTCGTAAGCAATCGAGAGAAGAAGCGGGGC
GGAAGTGATGTCGGCGGCAAAAACGACGGGAGAAATGGTAGCGGACGTGG
CGGTGGCAGTGGCGGTAATCGGAGAAGACGTGGCGGTCAAGTCAAAAGGA
GGAAGAAGAGAACCGGCCAAGACAAGGAGAGGGCGGGCGCGTCGAGTGAA
GGGCGGGGGAACGGTAACGCGAGATGGCTCGGCCGGGAAGAGGCTGAAAA
ACCCAGAAGGCGCGCCGAGAAGGGAGATAGGAAGCACGGAGGAGCTGTGA
CGGAAGCCGACGATTTCAGCTCCGGGGGTGAAGATAGAGATGATGATGCC
GGCGCGCGTGATGGTGCTGATGCCGGCGAGGGCAGCGGCGGGGGAGATGG
GAGCGGGGCAGCGGGAGGTTGGCCTGGCAGAGGAATCGACCAAGTGTGGA
ATCTCGAAAGCCGGAGAAAGAAGGAGATGGAGGAGGAGGAGAGGAAGCGA
ACTAGAAAAGAG
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