mRNA_H-paniculata_contig7556.15540.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7556.15540.1
Unique NamemRNA_H-paniculata_contig7556.15540.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: D7FPB2_ECTSI (Proteasome subunit alpha type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 4.140e-40
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    4 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFK 210
            ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAML+AVDDEKGPQLFK
Sbjct:   83 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLIAVDDEKGPQLFK 151
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A835YUN1_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUN1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.840e-32
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    4 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            AD+R  VQRLRYEAHEFRFKYGYD P   LARR ADI QVYTQQAS+RALACVA+LVAVDDEKGPQ+FKV 
Sbjct:   83 ADARASVQRLRYEAHEFRFKYGYDVPVGTLARRFADICQVYTQQASLRALACVALLVAVDDEKGPQVFKVD 153
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A4D9D8R2_9STRA (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8R2_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.770e-28
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    7 DSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            DSR  V RLR EAHEFRFKYGYD P HVLA+RIADIAQVYTQQASMRALA V MLV VDDE+GPQL+KV 
Sbjct:  110 DSRAQVTRLRQEAHEFRFKYGYDIPVHVLAKRIADIAQVYTQQASMRALATVCMLVGVDDERGPQLYKVD 179
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A2D4BD13_PYTIN (Proteasome subunit alpha type n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD13_PYTIN)

HSP 1 Score: 110 bits (276), Expect = 2.110e-28
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 PADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            PAD+R  VQRLRYEAH+F  KYGY  P HVLA+RIAD+AQVYTQ ASMRA   +  L++VDDEKGPQLFKV 
Sbjct:   81 PADARAQVQRLRYEAHDFEHKYGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITFLISVDDEKGPQLFKVD 152
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A662WT91_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WT91_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.610e-27
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    4 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            +DS+  VQRLRYEAHEF  K+GY  P HVLA+RIAD+AQVYTQ ASMRA   + ML++VDDEKGPQLFK+ 
Sbjct:   51 SDSKAQVQRLRYEAHEFESKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLISVDDEKGPQLFKID 121
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A7S2WQZ1_9STRA (Proteasome subunit alpha type n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQZ1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.780e-27
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    4 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            AD RV V RLR EAHEF+F YGYD P HVLA+RIADI+QVYTQ+AS+R LAC  +L +VDDEKGPQLFK+ 
Sbjct:   84 ADCRVQVTRLRQEAHEFKFNYGYDMPVHVLAKRIADISQVYTQEASLRMLACNVILSSVDDEKGPQLFKID 154
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A8K1FJ95_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ95_PYTOL)

HSP 1 Score: 107 bits (268), Expect = 3.310e-27
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 PADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            PAD+R  VQRLRYEAHEF  K+GY  P HVL++RIAD+AQVYTQ ASMRA   +  L+ VDDEKGPQLFK+ 
Sbjct:   81 PADARAQVQRLRYEAHEFENKFGYKIPVHVLSKRIADVAQVYTQHASMRAFGVITFLIGVDDEKGPQLFKID 152
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A067BYZ3_SAPPC (Proteasome subunit alpha type n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BYZ3_SAPPC)

HSP 1 Score: 106 bits (264), Expect = 1.310e-26
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    4 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            AD++  VQRLRYEAH+F  KYGY  P HVLA+R+ADI+QVYTQ ASMRAL  V ML++VD+EKGPQL+K+ 
Sbjct:   82 ADAKAQVQRLRYEAHDFEHKYGYPVPCHVLAKRLADISQVYTQHASMRALGVVTMLISVDEEKGPQLYKID 152
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: H3G9M2_PHYRM (Proteasome subunit alpha type n=26 Tax=Oomycota TaxID=4762 RepID=H3G9M2_PHYRM)

HSP 1 Score: 105 bits (263), Expect = 1.850e-26
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    4 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            ADS+  VQRLR+EAHEF  K+GY  P HVLA+RIAD+AQVYTQ ASMRA   + MLV+VD+EKGPQLFK+ 
Sbjct:   82 ADSKAQVQRLRFEAHEFENKFGYKIPCHVLAKRIADVAQVYTQHASMRAFGVITMLVSVDEEKGPQLFKID 152
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BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Match: A0A7S2XVL7_9STRA (Proteasome subunit alpha type n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVL7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.930e-26
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    4 ADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRALACVAMLVAVDDEKGPQLFKVS 216
            AD+RV+VQRLRYEA E+RFK+GYD P HVLARR+AD++QVYTQ A +RA+A   +L  VDDEKGP LF++ 
Sbjct:   84 ADARVVVQRLRYEAAEYRFKHGYDVPVHVLARRLADLSQVYTQHAGIRAMAATTILAGVDDEKGPMLFRID 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7556.15540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPB2_ECTSI4.140e-4098.55Proteasome subunit alpha type n=1 Tax=Ectocarpus s... [more]
A0A835YUN1_9STRA3.840e-3281.69Proteasome subunit alpha type n=1 Tax=Tribonema mi... [more]
A0A4D9D8R2_9STRA1.770e-2881.43PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A2D4BD13_PYTIN2.110e-2870.83Proteasome subunit alpha type n=1 Tax=Pythium insi... [more]
A0A662WT91_9STRA1.610e-2769.01Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S2WQZ1_9STRA1.780e-2771.83Proteasome subunit alpha type n=2 Tax=Rhizochromul... [more]
A0A8K1FJ95_PYTOL3.310e-2768.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BYZ3_SAPPC1.310e-2667.61Proteasome subunit alpha type n=4 Tax=Saprolegniac... [more]
H3G9M2_PHYRM1.850e-2669.01Proteasome subunit alpha type n=26 Tax=Oomycota Ta... [more]
A0A7S2XVL7_9STRA3.930e-2666.20Proteasome subunit alpha type n=1 Tax=Fibrocapsa j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7556contigH-paniculata_contig7556:222..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.4e-31
Seed eggNOG ortholog2880.D7FPB2
Preferred namePSMA6
KEGG koko:K02730
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0182@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-15_004060.2
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.9648273-CDS-H-paniculata_contig7556:221..4581622930928.9648273-CDS-H-paniculata_contig7556:221..458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 222..458 +
1691481514.7745664-CDS-H-paniculata_contig7556:221..4581691481514.7745664-CDS-H-paniculata_contig7556:221..458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 222..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7556.15540.1prot_H-paniculata_contig7556.15540.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7556 222..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7556.15540.1

>prot_H-paniculata_contig7556.15540.1 ID=prot_H-paniculata_contig7556.15540.1|Name=mRNA_H-paniculata_contig7556.15540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
PADSRVLVQRLRYEAHEFRFKYGYDCPAHVLARRIADIAQVYTQQASMRA
LACVAMLVAVDDEKGPQLFKVSLQFVVL*
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mRNA from alignment at H-paniculata_contig7556:222..458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7556.15540.1 ID=mRNA_H-paniculata_contig7556.15540.1|Name=mRNA_H-paniculata_contig7556.15540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at H-paniculata_contig7556:222..458+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCGGACTCACGAGTGTTGGTGCAGAGGCTAAGATATGAGGCACACGA
GTTCAGGTTCAAGTACGGTTACGACTGTCCGGCCCATGTGCTGGCCAGGC
GCATCGCGGACATCGCGCAGGTCTACACACAGCAGGCATCAATGCGTGCA
CTGGCTTGCGTGGCTATGCTTGTGGCCGTGGATGACGAGAAGGGGCCTCA
ACTGTTCAAGGTATCGCTGCAGTTTGTGGTTCTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7556:222..458+

>mRNA_H-paniculata_contig7556.15540.1 ID=mRNA_H-paniculata_contig7556.15540.1|Name=mRNA_H-paniculata_contig7556.15540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig7556:222..458+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCGGACTCACGAGTGTTGGTGCAGAGGCTAAGATATGAGGCACACGA
GTTCAGGTTCAAGTACGGTTACGACTGTCCGGCCCATGTGCTGGCCAGGC
GCATCGCGGACATCGCGCAGGTCTACACACAGCAGGCATCAATGCGTGCA
CTGGCTTGCGTGGCTATGCTTGTGGCCGTGGATGACGAGAAGGGGCCTCA
ACTGTTCAAGGTATCGCTGCAGTTTGTGGTTCTGTGACCAGCGGACTCAC
GAGTGTTGGTGCAGAGGCTAAGATATGAGGCACACGAGTTCAGGTTCAAG
TACGGTTACGACTGTCCGGCCCATGTGCTGGCCAGGCGCATCGCGGACAT
CGCGCAGGTCTACACACAGCAGGCATCAATGCGTGCACTGGCTTGCGTGG
CTATGCTTGTGGCCGTGGATGACGAGAAGGGGCCTCAACTGTTCAAGGTA
TCGCTGCAGTTTGTGGTTCTGTGA
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