mRNA_H-paniculata_contig7556.15541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7556.15541.1
Unique NamemRNA_H-paniculata_contig7556.15541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7556.15541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7556contigH-paniculata_contig7556:6436..9241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size283
Cds size282
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7556.15541.1prot_H-paniculata_contig7556.15541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7556 6436..9241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.8747423-CDS-H-paniculata_contig7556:6435..64881622930928.8747423-CDS-H-paniculata_contig7556:6435..6488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 6436..6488 +
1691481514.7462814-CDS-H-paniculata_contig7556:6435..64881691481514.7462814-CDS-H-paniculata_contig7556:6435..6488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 6436..6488 +
1622930928.8956766-CDS-H-paniculata_contig7556:8329..84371622930928.8956766-CDS-H-paniculata_contig7556:8329..8437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 8330..8437 +
1691481514.7544794-CDS-H-paniculata_contig7556:8329..84371691481514.7544794-CDS-H-paniculata_contig7556:8329..8437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 8330..8437 +
1622930928.9141092-CDS-H-paniculata_contig7556:9120..92411622930928.9141092-CDS-H-paniculata_contig7556:9120..9241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 9121..9241 +
1691481514.7622313-CDS-H-paniculata_contig7556:9120..92411691481514.7622313-CDS-H-paniculata_contig7556:9120..9241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7556 9121..9241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7556.15541.1

>prot_H-paniculata_contig7556.15541.1 ID=prot_H-paniculata_contig7556.15541.1|Name=mRNA_H-paniculata_contig7556.15541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
AGTTATNLPFPPLRQTDRKPNGQWSSCSPAIFNHVFGFLVPPSVLDSCFM
RDERSISICSSYIDLGHIFYCGCDTSSGHVKFARRLRVTAIFG*
back to top

mRNA from alignment at H-paniculata_contig7556:6436..9241+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7556.15541.1 ID=mRNA_H-paniculata_contig7556.15541.1|Name=mRNA_H-paniculata_contig7556.15541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2806bp|location=Sequence derived from alignment at H-paniculata_contig7556:6436..9241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGAACAACAGCAACTAACCTTCCTTTTCCCCCTTTACGGCAGACTGA
CCGGTAAGCGACCTTTGAGATCGTTCGTTGTGTGCAATTATTCTACAATA
CCCAAGATCCATCTGCCCTACGAAATATCCGTATGTTGTGTTCCTGCCTC
TTTCAAGCGCTGAGGCAGCCCAATTCGGAAATGTCTATCTACCCAAGGTA
CATGATGCGAGAGTAGGGTAATCCCAGCGCTGAAGAGCCTCGTCTGATTC
TATTTCAACGATATCGGTTGGGGTGTTGAGCAGGTTTTGCGAACCGCAAG
CAGCACTGCTATCTGTCACAAATCGATACAGCATAAACACGCAGTTACAT
GGAGAGAGGGTACAGGTGGAGATGAGGCACAGCGCCAGTGGCCGGCCATA
AAGCGATGTAACTACTGGCGATGTAAATGTAGGTATGATTCACTCTCCTA
CCGTGCCTTGGGTGACATCGAGGTGGGTGTAAGAGCAACCAACGTTGCGA
TATTCGATGGTGCTCCCAATTGAAATTTCAGGACCGAGTGAAAGCATTGG
AGTGTATCCATATCCACCCATGCCATCATGTACTATCAAGAGGGTGCCAC
TGTCTGCTTCGCCTGTCTTTGCTTCGCCTGCCCTTCCCCCTCTGCATGCC
ACCGTATCTATTGATATCGGCATCTTGTTGCGGCTTGATACGTCCGCTTG
CCAGACGGCGGTGTCAAAGAACATCTATTCTCGATGCAGATTAACGGCAG
GGAGTTCATATATGTTGCATGATAGCTTCCATCTCTACGTTTGCGGCGCA
AAAGGGACCGAAATGTTGTACCCACCCTGCCCGGACGGCCATTGAGGTTT
TTCTCAAGCACACACGTTATCGTCACCCGGGGAGTGGACGCCAGGTTCCC
AGTAAATCGAATCCCATTTTTTTCCCCCCCGTAACACCCCTAACAGCATA
TTGGTGAAATGGGTACCCAACTTTGAAATGGGGACTCTGGGTTATATTGG
AAATAGGCTGTATCCTGAAGATCCGAAATTGATTTTCAGGAAACAGCCTA
TTTCCAATATAACCCAGGGTCCCCATCTCAAAGTTGGGTCCCTATTTCAC
CAATATGCTGTTCCCTGTGGTATTGCGACATACTGATATGGAACAAAATC
GCAAGGTAGTCAAAAGCACGCGCCCCAAAATTACAGAAACATACCTCACC
TACCTGTTTTTAAGTTGCTGGCGTAAATAGATTCATATGTTCGAATACTC
ATGCTGCCTCCCACGAATGTTGGTCAAGAGCTGTCTTTGAATATTCCCGA
CGATGGAAGCAGCAGATGAGCTGAGCTCCGCAGGAATCCCGTAACGTTCG
CAAAATTGGTCGAAAATAGTGGTTGCCTGTGCAACTCAGCAAAGTAGATA
GTAAGTAACCCATGCAAGAGACGTCTTGACCTCAACATCCACAGGCTTTC
TGACCCGTTCCCAGCACACCTTTTTAAAATCGGCATCAAAGGCGCTGATT
TGAGCTCTAGCAACACACCCAGTATGCCTAGGGGTTGGGGTTTGCGCTAG
GGTTAGTTTCGGCAGTGGCTCTGCTCCCTTCGGGACACAAAACAAATCGA
GCAATGAATCAAAAAAACTGCCTATCAACCATCATCGCTTTCGACCAATT
TGGTTAACATGTCTGAATGAAGCTACCTGTGTTGTATGGCGGGCGTTATT
CCTACGCACAACAATTCGCACACAAAATTTACGTGATTTGTGGTTACACT
TTGCAGGTCCCCCCACTAGGTAGCACATCCAACTATAACCACCATGTCTA
TGAGTATGTAGCTGGGATGCGGCATGTTGCGCCGTTTGTCCTATTTTGTT
CGGTGGTAACACAGTGCATCTATTGCTTCTGTTTGATCTTGCAGGAAGCC
AAATGGGCAGTGGAGCTCCTGCTCGCCAGCAATCTTCAATCATGTTTTCG
GGTTCTTGGTTCCACCTTCTGTTCTCGATTCTTGCTTTATGCGCGACGAA
CGGTGAGTCCATCAGCAAAAACATTCTAACCTGTGTTCTTTTTCGTGAAA
CATGTCACAGACCTTGGACCCTATAAAAAGGGCAGAATGCTACTGATATA
TTATGCAAGCAGGCAATGTGAACCGCCTTAAGAACGACCTTTCTCGTTAA
ACTTTGTGAAGAACGGTAAGTTAACGCCGTCATATCTTAATTGGATCATT
CGTTCAGGACTCCCAATTAGTGAATGGGTAGGCAATACAAGCTGATTCGT
CGCATAAGTCGATTCTCTGACCACTAGTTGTTAAGCCAACAATGCTTACG
GCAGTAAGTAGCCGGGCAGGATTGACACCAAATTTTGAAGATCGTGGGGC
GTGACGGTCGGGTGCCCTGCCACAGAAACAACGGCATTTCTTTTCACAAA
CTATCTAAATGGTCGAAGCGATGTTTGCTTCACTTTTGCCAAGAGGCGTT
TGGAGGACATGTGTCGTGTTTTGCGCACCATCCCCGCCTCGATTTCTTAC
GGCACCAGCACTGAAGACGCCGCCAAAACGAAGCGTGCACCCTCCTTTCC
TTGATTTTTTTTCGGCCGCTATATTTCATGTACCATCGCGCGTGTTAACT
TGAACCTCAAACATTCGTGACGCTCGTCCCTGAAGCCCGTTGTTAACTCA
CCACCGTTGCCCAATTACCTCTGTGATACATACAGGTCAATCTCAATCTG
CTCCTCCTATATCGACCTCGGCCATATCTTTTACTGTGGCTGCGACACCA
GCTCCGGCCACGTCAAATTCGCAAGGCGGCTCCGTGTCACCGCCATTTTC
GGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7556:6436..9241+

>mRNA_H-paniculata_contig7556.15541.1 ID=mRNA_H-paniculata_contig7556.15541.1|Name=mRNA_H-paniculata_contig7556.15541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig7556:6436..9241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGAACAACAGCAACTAACCTTCCTTTTCCCCCTTTACGGCAGACTGA
CCGGCGGGAACAACAGCAACTAACCTTCCTTTTCCCCCTTTACGGCAGAC
TGACCGGAAGCCAAATGGGCAGTGGAGCTCCTGCTCGCCAGCAATCTTCA
ATCATGTTTTCGGGTTCTTGGTTCCACCTTCTGTTCTCGATTCTTGCTTT
ATGCGCGACGAACGGAAGCCAAATGGGCAGTGGAGCTCCTGCTCGCCAGC
AATCTTCAATCATGTTTTCGGGTTCTTGGTTCCACCTTCTGTTCTCGATT
CTTGCTTTATGCGCGACGAACGGTCAATCTCAATCTGCTCCTCCTATATC
GACCTCGGCCATATCTTTTACTGTGGCTGCGACACCAGCTCCGGCCACGT
CAAATTCGCAAGGCGGCTCCGTGTCACCGCCATTTTCGGGTGAGTCAATC
TCAATCTGCTCCTCCTATATCGACCTCGGCCATATCTTTTACTGTGGCTG
CGACACCAGCTCCGGCCACGTCAAATTCGCAAGGCGGCTCCGTGTCACCG
CCATTTTCGGGTGA
back to top