mRNA_H-paniculata_contig7555.15539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7555.15539.1
Unique NamemRNA_H-paniculata_contig7555.15539.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7555.15539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7555contigH-paniculata_contig7555:1880..2457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.7741091-CDS-H-paniculata_contig7555:1879..20391622930928.7741091-CDS-H-paniculata_contig7555:1879..2039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7555 1880..2039 -
1691481514.7279189-CDS-H-paniculata_contig7555:1879..20391691481514.7279189-CDS-H-paniculata_contig7555:1879..2039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7555 1880..2039 -
1622930928.7996066-CDS-H-paniculata_contig7555:2314..24571622930928.7996066-CDS-H-paniculata_contig7555:2314..2457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7555 2315..2457 -
1691481514.7362952-CDS-H-paniculata_contig7555:2314..24571691481514.7362952-CDS-H-paniculata_contig7555:2314..2457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7555 2315..2457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7555.15539.1prot_H-paniculata_contig7555.15539.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7555 1880..2457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7555.15539.1

>prot_H-paniculata_contig7555.15539.1 ID=prot_H-paniculata_contig7555.15539.1|Name=mRNA_H-paniculata_contig7555.15539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
RDGSGQHERQQYNSRKIREETSDGCNQSGREGVHKKCDNAASSSNKNGIP
GDVCRSMFGRDRLSGRHEDNHSMPHERLFEKWPRGSDGAQDNHKQWKGMG
K
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mRNA from alignment at H-paniculata_contig7555:1880..2457-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7555.15539.1 ID=mRNA_H-paniculata_contig7555.15539.1|Name=mRNA_H-paniculata_contig7555.15539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig7555:1880..2457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGATGGAAGTGGACAACATGAACGGCAACAGTACAACAGTCGCAAGAT
CCGTGAGGAAACTAGTGATGGTTGCAACCAGAGCGGACGCGAGGGAGTAC
ACAAGAAGTGCGACAATGCTGCATCTTCGTCAAACAAAAACGGGTGAGTT
ACTACCGTTGGTAGGGCTTTGCGTAATGCTTACAAGTGTGTTGGTTTGTG
TTTGATTCACTAGCTCTTTTCAGACTCTCATCACATAGCTAGGCGGTAGA
TACCCGCATGACTTCCGCCTCATGTGATCAATTTCATTTCCCTTTCGTTA
TATGCGGAGAATACTATTTTACACCAGGAAATTAGCCCCGTTTAAAGAAT
ATCATTGCCGCCAACATGCATTGCATACACCAAATGACACACGCCGCTTG
ATTTGAACCCGTTCAAAGGATCCCTGGCGATGTATGTCGGAGCATGTTCG
GACGCGATAGACTGTCTGGGAGACACGAAGACAACCACAGCATGCCGCAT
GAAAGGTTGTTTGAAAAGTGGCCGCGTGGATCAGATGGCGCGCAAGACAA
CCACAAACAGTGGAAGGGCATGGGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7555:1880..2457-

>mRNA_H-paniculata_contig7555.15539.1 ID=mRNA_H-paniculata_contig7555.15539.1|Name=mRNA_H-paniculata_contig7555.15539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig7555:1880..2457- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGATGGAAGTGGACAACATGAACGGCAACAGTACAACAGTCGCAAGAT
CCGTGAGGAAACTAGTGATGGTTGCAACCAGAGCGGACGCGAGGGAGTAC
ACAAGAAGTGCGACAATGCTGCATCTTCGTCAAACAAAAACGGCGGGATG
GAAGTGGACAACATGAACGGCAACAGTACAACAGTCGCAAGATCCGTGAG
GAAACTAGTGATGGTTGCAACCAGAGCGGACGCGAGGGAGTACACAAGAA
GTGCGACAATGCTGCATCTTCGTCAAACAAAAACGGGATCCCTGGCGATG
TATGTCGGAGCATGTTCGGACGCGATAGACTGTCTGGGAGACACGAAGAC
AACCACAGCATGCCGCATGAAAGGTTGTTTGAAAAGTGGCCGCGTGGATC
AGATGGCGCGCAAGACAACCACAAACAGTGGAAGGGCATGGGCAAGGATC
CCTGGCGATGTATGTCGGAGCATGTTCGGACGCGATAGACTGTCTGGGAG
ACACGAAGACAACCACAGCATGCCGCATGAAAGGTTGTTTGAAAAGTGGC
CGCGTGGATCAGATGGCGCGCAAGACAACCACAAACAGTGGAAGGGCATG
GGCAAG
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