mRNA_H-paniculata_contig7551.15535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7551.15535.1
Unique NamemRNA_H-paniculata_contig7551.15535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: F0Y2C1_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2C1_AURAN)

HSP 1 Score: 125 bits (315), Expect = 4.150e-34
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    4 VKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            VKVGDLGLGR MS+++F AHSKVGTPLYMSPEVL+G+ Y WK+DVWSLGC+LYELAMLRSPFK+EGL LY
Sbjct:  144 VKVGDLGLGRMMSEHTFEAHSKVGTPLYMSPEVLRGDGYDWKSDVWSLGCVLYELAMLRSPFKAEGLNLY 213
[Close]
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: T0PV50_SAPDV (NEK protein kinase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PV50_SAPDV)

HSP 1 Score: 126 bits (317), Expect = 6.400e-33
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QVKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            QVKVGDLGLGR +S+N+  AHSKVGTPLYMSPEVL+G+ Y WK DVWSLGC+LYELAMLRSPFKSEGL LY
Sbjct:  160 QVKVGDLGLGRHLSENTMEAHSKVGTPLYMSPEVLRGDGYDWKCDVWSLGCILYELAMLRSPFKSEGLNLY 230
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BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: A0A7S1TSS1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 2.360e-32
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QVKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            QVKVGDLGLGR MS+++  AHSKVGTPLYMSPEVL+G  Y WK+D+WSLGC+LYELAML+SPFKSEGL LY
Sbjct:  164 QVKVGDLGLGRAMSEHTMEAHSKVGTPLYMSPEVLRGGGYDWKSDIWSLGCLLYELAMLKSPFKSEGLNLY 234
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BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: A0A1V9YVL4_9STRA (NimA-related protein kinase 6 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YVL4_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.510e-32
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QVKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            QVKVGDLGLGR +S+N+  AHSKVGTPLYMSPEVL+G+ Y WK DVWSLGC+LYELAMLRSPFKSEGL LY
Sbjct:  160 QVKVGDLGLGRHLSENTMEAHSKVGTPLYMSPEVLRGDGYDWKCDVWSLGCILYELAMLRSPFKSEGLNLY 230
[Close]
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: A0A8K1CJK0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJK0_PYTOL)

HSP 1 Score: 126 bits (317), Expect = 2.680e-32
Identity = 57/71 (80.28%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:    1 QVKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            +VKVGDLGLGR +S+N+  AHSKVGTPLYMSPEVL+GE Y WK+DVWSLGC+LYELAM+RSPFKSEGL LY
Sbjct:  159 EVKVGDLGLGRHLSENTLEAHSKVGTPLYMSPEVLRGEGYDWKSDVWSLGCILYELAMMRSPFKSEGLNLY 229
[Close]
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: A0A067CV70_SAPPC (NEK protein kinase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CV70_SAPPC)

HSP 1 Score: 126 bits (317), Expect = 2.720e-32
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:    1 QVKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            QVKVGDLGLGR +S+N+  AHSKVGTPLYMSPEVL+G+ Y WK DVWSLGC+LYELAMLRSPFKSEGL LY
Sbjct:  200 QVKVGDLGLGRHLSENTMEAHSKVGTPLYMSPEVLRGDGYDWKCDVWSLGCILYELAMLRSPFKSEGLNLY 270
[Close]
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: K3WH02_GLOUD (Protein kinase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH02_GLOUD)

HSP 1 Score: 126 bits (317), Expect = 2.820e-32
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    4 VKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            VKVGDLGLGR +S+N+  AHSKVGTPLYMSPEVL+GE Y WK+DVWSLGC+LYELAMLRSPFKSEGL LY
Sbjct:  162 VKVGDLGLGRHLSENTMEAHSKVGTPLYMSPEVLRGEGYDWKSDVWSLGCILYELAMLRSPFKSEGLNLY 231
[Close]
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: A0A835ZIF0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIF0_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.250e-32
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 QVKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            Q+KVGDLGLGR +S+++  AHSKVGTPLYMSPEVL+G  Y WK+D+WSLGC+LYELAMLRSPFK EGL LY
Sbjct:  177 QIKVGDLGLGRALSEDTLEAHSKVGTPLYMSPEVLRGGGYDWKSDIWSLGCILYELAMLRSPFKGEGLNLY 247
[Close]
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: A0A812YD20_SYMMI (Nek7 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YD20_SYMMI)

HSP 1 Score: 119 bits (298), Expect = 8.360e-32
Identity = 52/70 (74.29%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:    4 VKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTLY 213
            VKVGDLGL R++S+N++ AHSKVGTPLYMSPEVL+G+ Y +K+D+WS+GC+LYELAML+SPFKSEGL LY
Sbjct:   18 VKVGDLGLSRELSENTYQAHSKVGTPLYMSPEVLRGDGYDFKSDIWSIGCLLYELAMLKSPFKSEGLNLY 87
[Close]
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Match: W2QCF6_PHYPN (NEK protein kinase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QCF6_PHYPN)

HSP 1 Score: 120 bits (300), Expect = 8.920e-32
Identity = 55/69 (79.71%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    4 VKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLGCMLYELAMLRSPFKSEGLTL 210
            VKVGDLGLGR +S+N+  A SKVGTPLYMSPEVL+GE+Y WK+DVWS+GC+LYELAMLRSPFKSEGL L
Sbjct:  162 VKVGDLGLGRYLSENTIEARSKVGTPLYMSPEVLRGESYDWKSDVWSMGCILYELAMLRSPFKSEGLNL 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7551.15535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0Y2C1_AURAN4.150e-3481.43Protein kinase domain-containing protein (Fragment... [more]
T0PV50_SAPDV6.400e-3381.69NEK protein kinase n=1 Tax=Saprolegnia diclina (st... [more]
A0A7S1TSS1_9STRA2.360e-3278.87Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A1V9YVL4_9STRA2.510e-3281.69NimA-related protein kinase 6 n=1 Tax=Achlya hypog... [more]
A0A8K1CJK0_PYTOL2.680e-3280.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067CV70_SAPPC2.720e-3281.69NEK protein kinase n=1 Tax=Saprolegnia parasitica ... [more]
K3WH02_GLOUD2.820e-3282.86Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A835ZIF0_9STRA4.250e-3276.06Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A812YD20_SYMMI8.360e-3274.29Nek7 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
W2QCF6_PHYPN8.920e-3279.71NEK protein kinase n=1 Tax=Phytophthora parasitica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7551contigH-paniculata_contig7551:6041..6736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog112098.XP_008617146.1
KEGG koko:K08857,ko:K20875,ko:K20876
KEGG TC1.I.1.1.3
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0591@1,KOG0591@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko03400
Exons2
Model size215
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.2907155-CDS-H-paniculata_contig7551:6040..61091622930928.2907155-CDS-H-paniculata_contig7551:6040..6109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7551 6041..6109 +
1691481514.508969-CDS-H-paniculata_contig7551:6040..61091691481514.508969-CDS-H-paniculata_contig7551:6040..6109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7551 6041..6109 +
1622930928.3147242-CDS-H-paniculata_contig7551:6591..67351622930928.3147242-CDS-H-paniculata_contig7551:6591..6735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7551 6592..6735 +
1691481514.5247536-CDS-H-paniculata_contig7551:6591..67351691481514.5247536-CDS-H-paniculata_contig7551:6591..6735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7551 6592..6735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7551.15535.1prot_H-paniculata_contig7551.15535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7551 6041..6735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7551.15535.1

>prot_H-paniculata_contig7551.15535.1 ID=prot_H-paniculata_contig7551.15535.1|Name=mRNA_H-paniculata_contig7551.15535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
QVKVGDLGLGRKMSKNSFVAHSKVGTPLYMSPEVLKGEAYGWKTDVWSLG
CMLYELAMLRSPFKSEGLTLY
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mRNA from alignment at H-paniculata_contig7551:6041..6736+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7551.15535.1 ID=mRNA_H-paniculata_contig7551.15535.1|Name=mRNA_H-paniculata_contig7551.15535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at H-paniculata_contig7551:6041..6736+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTAAGGTTGGAGATCTGGGACTAGGGCGAAAGATGAGCAAGAACTC
GTTCGTGGCGCACTCGAAGGTAAGAGGATCGCTGTATGGATCAGAAGTCA
GATACTTTCGCCGGCTGTGGTGGTATGTGCTAATGCATTGGGGGGGGGGG
GGGGTATTTCCAAGGGCTACCTCTACGGTAGGCTCCAAAAAATGTTATCA
GAGGTAGCTTGCCCCGACCATATCTGATGAGGATCTATGCCCATCTATAC
TTTGTTTGCGAAGTGAGCAGTTTTCCTTAAAACGACTATTCTGCCTGTAT
GCATGTTTTTACATATGAGGGTAAAGACTTACTATATTTCGGCGTCGAAT
ACAAGTACAAGTATAGCGGCGAGGCTAGCGTTTGCACTCTGCCTAAATAT
TTTGTGCGTCGGGTATGAACAACGAAGCAAGACCCGCGTTGTCGAGCACA
CAGATGAAGGGAACGCCAAGTTGTAATATATGACGTGCGACTGCCACGTC
TCTCTGTGTGTGTCTCTGTGTGTATGTCTGTGTGTATAATTGTTTTCGCA
GGTGGGCACGCCACTTTACATGTCACCGGAGGTCCTAAAAGGCGAAGCGT
ACGGATGGAAAACTGACGTGTGGTCCCTGGGGTGCATGCTTTACGAGCTG
GCCATGCTGCGAAGCCCGTTCAAGAGCGAGGGACTTACCCTTTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig7551:6041..6736+

>mRNA_H-paniculata_contig7551.15535.1 ID=mRNA_H-paniculata_contig7551.15535.1|Name=mRNA_H-paniculata_contig7551.15535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig7551:6041..6736+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTAAGGTTGGAGATCTGGGACTAGGGCGAAAGATGAGCAAGAACTC
GTTCGTGGCGCACTCGAAGCAGGTTAAGGTTGGAGATCTGGGACTAGGGC
GAAAGATGAGCAAGAACTCGTTCGTGGCGCACTCGAAGGTGGGCACGCCA
CTTTACATGTCACCGGAGGTCCTAAAAGGCGAAGCGTACGGATGGAAAAC
TGACGTGTGGTCCCTGGGGTGCATGCTTTACGAGCTGGCCATGCTGCGAA
GCCCGTTCAAGAGCGAGGGACTTACCCTTTATGTGGGCACGCCACTTTAC
ATGTCACCGGAGGTCCTAAAAGGCGAAGCGTACGGATGGAAAACTGACGT
GTGGTCCCTGGGGTGCATGCTTTACGAGCTGGCCATGCTGCGAAGCCCGT
TCAAGAGCGAGGGACTTACCCTTTAT
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