mRNA_H-paniculata_contig7550.15533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7550.15533.1
Unique NamemRNA_H-paniculata_contig7550.15533.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7550.15533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7550contigH-paniculata_contig7550:1455..2006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size553
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.0773191-UTR-H-paniculata_contig7550:1454..16581622930928.0773191-UTR-H-paniculata_contig7550:1454..1658Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7550 1455..1658 +
1691481514.4192753-UTR-H-paniculata_contig7550:1454..16581691481514.4192753-UTR-H-paniculata_contig7550:1454..1658Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7550 1455..1658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930928.0934448-CDS-H-paniculata_contig7550:1658..20061622930928.0934448-CDS-H-paniculata_contig7550:1658..2006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7550 1659..2006 +
1691481514.4331267-CDS-H-paniculata_contig7550:1658..20061691481514.4331267-CDS-H-paniculata_contig7550:1658..2006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7550 1659..2006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7550.15533.1prot_H-paniculata_contig7550.15533.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7550 1659..2006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7550.15533.1

>prot_H-paniculata_contig7550.15533.1 ID=prot_H-paniculata_contig7550.15533.1|Name=mRNA_H-paniculata_contig7550.15533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MSFQDYIPGRSGSRSTTPGTASTGPARGRASTGGETRAMNTATAGGWGAG
GVSGRRPTSGGYTGQQSGGFGSAGPLRTGGVGVESSGATGGAALHQGGLA
LGQRSNGGAVGGGGGG
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mRNA from alignment at H-paniculata_contig7550:1455..2006+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7550.15533.1 ID=mRNA_H-paniculata_contig7550.15533.1|Name=mRNA_H-paniculata_contig7550.15533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=552bp|location=Sequence derived from alignment at H-paniculata_contig7550:1455..2006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAATCTTCTTACCAGTACACTGTTGTCCGAATCACACCATTGCATTAAC
CAGCTACATCGCCGAGAAGACACACGCATAAACACACACGTGATCAAATA
AACACCCTCACATACCACACTACATACACATCCATAAACTCCCTGCATTT
CGTCTTCCGCAAGGTCCTCTTTCGGCCTGTGCCGACGGTCGCTATTTTGA
CAAAATGTCGTTCCAAGACTATATACCAGGCCGTAGTGGCAGTAGAAGTA
CTACTCCAGGAACGGCATCAACAGGCCCAGCACGAGGACGTGCATCTACA
GGAGGTGAAACGCGCGCGATGAACACTGCGACTGCGGGAGGCTGGGGGGC
TGGGGGTGTCTCTGGGCGACGACCAACTTCGGGGGGATATACTGGTCAGC
AATCAGGGGGCTTCGGGTCTGCCGGTCCCTTGCGAACGGGCGGGGTGGGT
GTCGAGAGCTCAGGTGCAACAGGCGGAGCAGCGTTGCATCAAGGAGGGTT
AGCGTTAGGGCAGAGGTCGAACGGGGGTGCTGTTGGAGGAGGTGGAGGCG
GG
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Coding sequence (CDS) from alignment at H-paniculata_contig7550:1455..2006+

>mRNA_H-paniculata_contig7550.15533.1 ID=mRNA_H-paniculata_contig7550.15533.1|Name=mRNA_H-paniculata_contig7550.15533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig7550:1455..2006+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTTCCAAGACTATATACCAGGCCGTAGTGGCAGTAGAAGTACTAC
TCCAGGAACGGCATCAACAGGCCCAGCACGAGGACGTGCATCTACAGGAG
GTGAAACGCGCGCGATGAACACTGCGACTGCGGGAGGCTGGGGGGCTGGG
GGTGTCTCTGGGCGACGACCAACTTCGGGGGGATATACTGGTCAGCAATC
AGGGGGCTTCGGGTCTGCCGGTCCCTTGCGAACGGGCGGGGTGGGTGTCG
AGAGCTCAGGTGCAACAGGCGGAGCAGCGTTGCATCAAGGAGGGTTAGCG
TTAGGGCAGAGGTCGAACGGGGGTGCTGTTGGAGGAGGTGGAGGCGGGAT
GTCGTTCCAAGACTATATACCAGGCCGTAGTGGCAGTAGAAGTACTACTC
CAGGAACGGCATCAACAGGCCCAGCACGAGGACGTGCATCTACAGGAGGT
GAAACGCGCGCGATGAACACTGCGACTGCGGGAGGCTGGGGGGCTGGGGG
TGTCTCTGGGCGACGACCAACTTCGGGGGGATATACTGGTCAGCAATCAG
GGGGCTTCGGGTCTGCCGGTCCCTTGCGAACGGGCGGGGTGGGTGTCGAG
AGCTCAGGTGCAACAGGCGGAGCAGCGTTGCATCAAGGAGGGTTAGCGTT
AGGGCAGAGGTCGAACGGGGGTGCTGTTGGAGGAGGTGGAGGCGGG
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