mRNA_H-paniculata_contig755.15531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig755.15531.1
Unique NamemRNA_H-paniculata_contig755.15531.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 5.710e-21
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITP 155
            FVDVD +VQ V+ATGIHEARHP+VQFALAVQ F YPHNVLSVW+Y+ASITP
Sbjct: 1735 FVDVDSVVQTVRATGIHEARHPDVQFALAVQAFPYPHNVLSVWVYIASITP 1785
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: A0A836CHA3_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.770e-15
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR 158
            F  V  +  +++ATG+H+A+HPEVQFALAVQ F Y +NVLSVW+Y+ASITPR
Sbjct: 1710 FTSVTDVSALIRATGVHDAKHPEVQFALAVQCFPYCNNVLSVWVYIASITPR 1761
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: A0A0L0DBK0_THETB (GPI mannosyltransferase 1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBK0_THETB)

HSP 1 Score: 68.2 bits (165), Expect = 9.250e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR 158
            F  VD LV+ V+ TG+H  +HP  Q ALAV V  YP+NVL+VW+YVAS+TPR
Sbjct: 2116 FTHVDPLVEAVRNTGVHLNKHPRSQCALAVFVHPYPNNVLAVWVYVASLTPR 2167
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: A0A7S4VR85_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VR85_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.860e-11
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITP 155
            F DV  +V  V+ T IHE++HP+V+FALAV+VF Y  NVLSVWI++ +++P
Sbjct:  235 FTDVKDVVNGVEFTAIHESKHPDVEFALAVRVFPYASNVLSVWIFICALSP 285
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: UPI001F048C62 (LOW QUALITY PROTEIN: coiled-coil and C2 domain-containing protein 2A-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F048C62)

HSP 1 Score: 64.3 bits (155), Expect = 2.090e-10
Identity = 26/56 (46.43%), Postives = 41/56 (73.21%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR*RFH 170
            F D++ ++ +V +TG+H    P V+FALAV +  YP NVLS+WIYVA++T + R++
Sbjct: 1130 FTDINPVINIVHSTGVHLTEDPNVEFALAVHIHPYPGNVLSLWIYVATLTRKIRYY 1185
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: A0A2K5NKJ1_CERAT (Coiled-coil and C2 domain containing 2B n=2 Tax=Cercocebus atys TaxID=9531 RepID=A0A2K5NKJ1_CERAT)

HSP 1 Score: 63.9 bits (154), Expect = 2.710e-10
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR 158
            + DV  ++  V  TGIH A  P+ +FALAV +  YP+N+LSVW+Y+AS+ P 
Sbjct:  349 YTDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYLASLVPH 400
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: UPI00083BF089 (LOW QUALITY PROTEIN: protein CC2D2B n=1 Tax=Rhinopithecus bieti TaxID=61621 RepID=UPI00083BF089)

HSP 1 Score: 63.9 bits (154), Expect = 2.810e-10
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR 158
            + DV  ++  V  TGIH A  P+ +FALAV +  YP+N+LSVW+Y+AS+ P 
Sbjct:  532 YTDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYLASLVPH 583
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: UPI0005F4DD0A (ectonucleoside triphosphate diphosphohydrolase 1 isoform X32 n=2 Tax=Macaca nemestrina TaxID=9545 RepID=UPI0005F4DD0A)

HSP 1 Score: 63.9 bits (154), Expect = 2.810e-10
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR 158
            + DV  ++  V  TGIH A  P+ +FALAV +  YP+N+LSVW+Y+AS+ P 
Sbjct:  572 YTDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYLASLVPH 623
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BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: A0A2K6LW24_RHIBE (DUF5523 domain-containing protein n=4 Tax=Cercopithecidae TaxID=9527 RepID=A0A2K6LW24_RHIBE)

HSP 1 Score: 63.9 bits (154), Expect = 2.850e-10
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR 158
            + DV  ++  V  TGIH A  P+ +FALAV +  YP+N+LSVW+Y+AS+ P 
Sbjct:  976 YTDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYLASLVPH 1027
[Close]
BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Match: A0A2K5JM65_COLAP (Coiled-coil and C2 domain containing 2B n=1 Tax=Colobus angolensis palliatus TaxID=336983 RepID=A0A2K5JM65_COLAP)

HSP 1 Score: 63.9 bits (154), Expect = 2.850e-10
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:    3 FVDVDQLVQMVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR 158
            + DV  ++  V  TGIH A  P+ +FALAV +  YP+N+LSVW+Y+AS+ P 
Sbjct: 1004 YTDVQSIIDAVYQTGIHSAEFPQTEFALAVYIHPYPNNILSVWVYLASLVPH 1055
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig755.15531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN2_ECTSI5.710e-2182.35CC2D2AN-C2 domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CHA3_9STRA3.770e-1563.46C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A0L0DBK0_THETB9.250e-1259.62GPI mannosyltransferase 1 n=1 Tax=Thecamonas trahe... [more]
A0A7S4VR85_9STRA2.860e-1154.90Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
UPI001F048C622.090e-1046.43LOW QUALITY PROTEIN: coiled-coil and C2 domain-con... [more]
A0A2K5NKJ1_CERAT2.710e-1048.08Coiled-coil and C2 domain containing 2B n=2 Tax=Ce... [more]
UPI00083BF0892.810e-1048.08LOW QUALITY PROTEIN: protein CC2D2B n=1 Tax=Rhinop... [more]
UPI0005F4DD0A2.810e-1048.08ectonucleoside triphosphate diphosphohydrolase 1 i... [more]
A0A2K6LW24_RHIBE2.850e-1048.08DUF5523 domain-containing protein n=4 Tax=Cercopit... [more]
A0A2K5JM65_COLAP2.850e-1048.08Coiled-coil and C2 domain containing 2B n=1 Tax=Co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig755contigH-paniculata_contig755:14570..14776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue4.8e-13
Seed eggNOG ortholog2880.D7FPN2
Preferred nameCC2D2A
KEGG koko:K16457,ko:K19352
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGsKOG3639@1,KOG3639@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size207
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig755.15531.1prot_H-paniculata_contig755.15531.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig755 14599..14730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.6193202-UTR-H-paniculata_contig755:14569..145981622930927.6193202-UTR-H-paniculata_contig755:14569..14598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 14570..14598 +
1691481514.185089-UTR-H-paniculata_contig755:14569..145981691481514.185089-UTR-H-paniculata_contig755:14569..14598Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 14570..14598 +
1622930927.6520474-UTR-H-paniculata_contig755:14730..147761622930927.6520474-UTR-H-paniculata_contig755:14730..14776Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 14731..14776 +
1691481514.2043688-UTR-H-paniculata_contig755:14730..147761691481514.2043688-UTR-H-paniculata_contig755:14730..14776Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 14731..14776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.6339953-CDS-H-paniculata_contig755:14598..147301622930927.6339953-CDS-H-paniculata_contig755:14598..14730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 14599..14730 +
1691481514.1957488-CDS-H-paniculata_contig755:14598..147301691481514.1957488-CDS-H-paniculata_contig755:14598..14730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 14599..14730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig755.15531.1

>prot_H-paniculata_contig755.15531.1 ID=prot_H-paniculata_contig755.15531.1|Name=mRNA_H-paniculata_contig755.15531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MVKATGIHEARHPEVQFALAVQVFAYPHNVLSVWIYVASITPR*
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mRNA from alignment at H-paniculata_contig755:14570..14776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig755.15531.1 ID=mRNA_H-paniculata_contig755.15531.1|Name=mRNA_H-paniculata_contig755.15531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig755:14570..14776+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTGTAGATGTGGACCAACTTGTGCAGATGGTGAAGGCTACGGGCATT
CATGAGGCGAGGCATCCTGAAGTACAGTTCGCCCTGGCTGTCCAAGTGTT
CGCCTATCCACACAACGTGCTTTCCGTTTGGATATATGTAGCCTCGATAA
CACCTCGGTAACGCTTTCACCTGTATTATTCCATTGGAATTGGTTTGATA
GAGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig755:14570..14776+

>mRNA_H-paniculata_contig755.15531.1 ID=mRNA_H-paniculata_contig755.15531.1|Name=mRNA_H-paniculata_contig755.15531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig755:14570..14776+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGGCTACGGGCATTCATGAGGCGAGGCATCCTGAAGTACAGTT
CGCCCTGGCTGTCCAAGTGTTCGCCTATCCACACAACGTGCTTTCCGTTT
GGATATATGTAGCCTCGATAACACCTCGGTAAATGGTGAAGGCTACGGGC
ATTCATGAGGCGAGGCATCCTGAAGTACAGTTCGCCCTGGCTGTCCAAGT
GTTCGCCTATCCACACAACGTGCTTTCCGTTTGGATATATGTAGCCTCGA
TAACACCTCGGTAA
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