mRNA_H-paniculata_contig755.15530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig755.15530.1
Unique NamemRNA_H-paniculata_contig755.15530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig755.15530.1 vs. uniprot
Match: A0A836CHA3_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.990e-18
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:   34 PFFSRPGNP---PPAQGYTSIQEDVNYRPTQQAFVYEVEDMIREALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQAFTGEARLG 291
            P+F+   NP   PP Q    +Q  + YR T  AFVY+VED++RE +KRD+RRWR+K+  T+FNADVSNRLAE+LPLLE+Q   GE  LG
Sbjct: 1601 PYFAPGVNPALDPPPQ---PLQPPLVYRATDVAFVYKVEDLLRETIKRDVRRWRAKKGPTSFNADVSNRLAEVLPLLEQQE-RGETPLG 1685
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BLAST of mRNA_H-paniculata_contig755.15530.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.180e-13
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:  178 RWRSKRSHTAFNADVSNRLAELLPLLEKQAFTGEARLGKD 297
            RWRSKRSHTAFNADVSNRLAELLPLLEKQA TG A++GKD
Sbjct: 1672 RWRSKRSHTAFNADVSNRLAELLPLLEKQALTGGAKMGKD 1711
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig755.15530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CHA3_9STRA2.990e-1856.18C2 domain-containing protein n=1 Tax=Tribonema min... [more]
D7FPN2_ECTSI1.180e-1390.00CC2D2AN-C2 domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig755contigH-paniculata_contig755:13001..14177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog2880.D7FPN2
Preferred nameCC2D2A
KEGG koko:K16457,ko:K19352
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGsKOG3639@1,KOG3639@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size298
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig755.15530.1prot_H-paniculata_contig755.15530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig755 13001..14177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.536353-CDS-H-paniculata_contig755:13000..131761622930927.536353-CDS-H-paniculata_contig755:13000..13176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 13001..13176 +
1691481514.1490486-CDS-H-paniculata_contig755:13000..131761691481514.1490486-CDS-H-paniculata_contig755:13000..13176Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 13001..13176 +
1622930927.5557568-CDS-H-paniculata_contig755:13531..136281622930927.5557568-CDS-H-paniculata_contig755:13531..13628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 13532..13628 +
1691481514.1638372-CDS-H-paniculata_contig755:13531..136281691481514.1638372-CDS-H-paniculata_contig755:13531..13628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 13532..13628 +
1622930927.573026-CDS-H-paniculata_contig755:14153..141771622930927.573026-CDS-H-paniculata_contig755:14153..14177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 14154..14177 +
1691481514.1759171-CDS-H-paniculata_contig755:14153..141771691481514.1759171-CDS-H-paniculata_contig755:14153..14177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 14154..14177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig755.15530.1

>prot_H-paniculata_contig755.15530.1 ID=prot_H-paniculata_contig755.15530.1|Name=mRNA_H-paniculata_contig755.15530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MKCLHLRHKRLPFFSRPGNPPPAQGYTSIQEDVNYRPTQQAFVYEVEDMI
REALKRDIRRWRSKRSHTAFNADVSNRLAELLPLLEKQAFTGEARLGKD
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mRNA from alignment at H-paniculata_contig755:13001..14177+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig755.15530.1 ID=mRNA_H-paniculata_contig755.15530.1|Name=mRNA_H-paniculata_contig755.15530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1177bp|location=Sequence derived from alignment at H-paniculata_contig755:13001..14177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATGCCTACATTTGCGTCACAAAAGGCTCCCATTTTTCTCGAGACC
GGGGAACCCACCACCGGCGCAGGGATACACGAGTATCCAAGAAGATGTCA
ATTACCGTCCCACTCAGCAGGCCTTCGTGTACGAAGTTGAAGATATGATT
CGTGAAGCGCTCAAGCGAGATATCAGGTTTGTCGTTAATTGCTACCATGT
GTCCTACTGTAAAATACTGTCATCGTCTCGTACAAAGATAATGGTGCTGA
ACGTATGAGGGAGTACGCAAATAATACCCATTTTTCTTTCGAAACACCTG
CGTAGTATTTGGTCCCTTTCTCTTCTGAGGCCCACGATGTCCCGTGTTCG
TGTCCCGTGGCATGAGCACCACAGAAGGCGAGAGATGGGTACTTTGACTA
CTTGCAATCAATGTGAACATTATATTCATACATTCCGTGACTGTACACAT
GACGGGTACTCCACCCGCCCATCCTCTCGCCCGCCTAACGTCCCCGACAT
GATGTACACACCTCCTCTCGATCCGACACAGGCGCTGGAGATCGAAACGG
TCGCACACGGCCTTCAACGCCGACGTGTCTAATCGACTCGCTGAGCTGTT
GCCTTTGTTAGAGAAACAGGCCTTTACGGTAAGACCGTCCATCCAACTCG
ACATTACCAACAGTGGTAGAAGCACAGTCGCAAGTTGTGGATGATTGTCA
CCCAATATATATACCACTGTATCAGTGGGTTTGGGGTATTGCTTACTCTG
GTTTAATAACTCCGTCGCCATAAAAAGGAACACAATGTTGATAGGCGAAG
CTTCCTTCGTTCAAGCCATGTACGTCGCACAACTTCGAGGGTAGTGAAAC
ACCAGAAAGAAGTACGCCACGAGGATGTGGGACTGGCAACAGGTCCCGTA
TGTAGTTGGAGCAATATCCAGCCGAGTGAATTTGGTGCTATTAGTCGAGT
GTTTGACGAGACAAGCTCAACCATACTTCGAATAGCGTCCTGTTGCTTCG
GTTGTGCCTTCTTTCGTAGAATGAGGATTCGATATACACTAGCATTCTAC
CTGCTATGACAATCAAGACATGTCGCCTCGGAAGTAGTATTGACGTCTGA
TCGTGGACCAGTCATCAAATATGATGTACGGACGCACCCGATATTCGCTG
TAGGGAGAGGCAAGACTGGGGAAGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig755:13001..14177+

>mRNA_H-paniculata_contig755.15530.1 ID=mRNA_H-paniculata_contig755.15530.1|Name=mRNA_H-paniculata_contig755.15530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig755:13001..14177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATGCCTACATTTGCGTCACAAAAGGCTCCCATTTTTCTCGAGACC
GGGGAACCCACCACCGGCGCAGGGATACACGAGTATCCAAGAAGATGTCA
ATTACCGTCCCACTCAGCAGGCCTTCGTGTACGAAGTTGAAGATATGATT
CGTGAAGCGCTCAAGCGAGATATCAGATGAAATGCCTACATTTGCGTCAC
AAAAGGCTCCCATTTTTCTCGAGACCGGGGAACCCACCACCGGCGCAGGG
ATACACGAGTATCCAAGAAGATGTCAATTACCGTCCCACTCAGCAGGCCT
TCGTGTACGAAGTTGAAGATATGATTCGTGAAGCGCTCAAGCGAGATATC
AGGCGCTGGAGATCGAAACGGTCGCACACGGCCTTCAACGCCGACGTGTC
TAATCGACTCGCTGAGCTGTTGCCTTTGTTAGAGAAACAGGCCTTTACGG
CGCTGGAGATCGAAACGGTCGCACACGGCCTTCAACGCCGACGTGTCTAA
TCGACTCGCTGAGCTGTTGCCTTTGTTAGAGAAACAGGCCTTTACGGGAG
AGGCAAGACTGGGGAAGGACGGAGAGGCAAGACTGGGGAAGGAC
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