mRNA_H-paniculata_contig755.15529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig755.15529.1
Unique NamemRNA_H-paniculata_contig755.15529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig755.15529.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.960e-16
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  159 ISGEDDMPDGDGPDAGVSLIRGGSDPASPAALVQKADRSTYIRVLATLDPIPIVLEKERILGSNQE 356
            +  E+D P G+  +AGVSL  G  DPASPAALV KADR+TYIRVLATLDPIPIVL +E + GSNQE
Sbjct: 1386 LQDEEDAP-GEKEEAGVSLTSGPGDPASPAALVHKADRATYIRVLATLDPIPIVLPQESVPGSNQE 1450
[Close]
BLAST of mRNA_H-paniculata_contig755.15529.1 vs. uniprot
Match: A0A836CHA3_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHA3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.040e-9
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   28 QVREMIIISLFDEVEFDDRGKGGYLDDEASIRREKHFLGSVTLPFQ 165
            QV++ + +SLFD VEFDD  +GG+++ E ++R EKHFLGSV +PFQ
Sbjct: 1202 QVKDAVHVSLFDSVEFDDSARGGFVEGEETVRTEKHFLGSVAIPFQ 1247
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig755.15529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPN2_ECTSI1.960e-1668.18CC2D2AN-C2 domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CHA3_9STRA7.040e-956.52C2 domain-containing protein n=1 Tax=Tribonema min... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig755contigH-paniculata_contig755:6645..8707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue6.1e-14
Seed eggNOG ortholog2880.D7FPN2
Preferred nameCC2D2A
KEGG koko:K16457,ko:K19352
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGsKOG3639@1,KOG3639@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size359
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig755.15529.1prot_H-paniculata_contig755.15529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig755 7935..8707 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.4167936-UTR-H-paniculata_contig755:6644..68091622930927.4167936-UTR-H-paniculata_contig755:6644..6809Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 6645..6809 +
1691481514.0706813-UTR-H-paniculata_contig755:6644..68091691481514.0706813-UTR-H-paniculata_contig755:6644..6809Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 6645..6809 +
1622930927.4353535-UTR-H-paniculata_contig755:7923..79341622930927.4353535-UTR-H-paniculata_contig755:7923..7934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 7924..7934 +
1691481514.0921562-UTR-H-paniculata_contig755:7923..79341691481514.0921562-UTR-H-paniculata_contig755:7923..7934Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig755 7924..7934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.4596212-CDS-H-paniculata_contig755:7934..80291622930927.4596212-CDS-H-paniculata_contig755:7934..8029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 7935..8029 +
1691481514.104701-CDS-H-paniculata_contig755:7934..80291691481514.104701-CDS-H-paniculata_contig755:7934..8029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 7935..8029 +
1622930927.4769971-CDS-H-paniculata_contig755:8308..83711622930927.4769971-CDS-H-paniculata_contig755:8308..8371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 8309..8371 +
1691481514.116586-CDS-H-paniculata_contig755:8308..83711691481514.116586-CDS-H-paniculata_contig755:8308..8371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 8309..8371 +
1622930927.49365-CDS-H-paniculata_contig755:8682..87071622930927.49365-CDS-H-paniculata_contig755:8682..8707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 8683..8707 +
1691481514.1366522-CDS-H-paniculata_contig755:8682..87071691481514.1366522-CDS-H-paniculata_contig755:8682..8707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 8683..8707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig755.15529.1

>prot_H-paniculata_contig755.15529.1 ID=prot_H-paniculata_contig755.15529.1|Name=mRNA_H-paniculata_contig755.15529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MPDGDGPDAGVSLIRGGSDPASPAALVQKADRSTYIRVLATLDPIPIVLE
KERILGSNQEP
back to top

mRNA from alignment at H-paniculata_contig755:6645..8707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig755.15529.1 ID=mRNA_H-paniculata_contig755.15529.1|Name=mRNA_H-paniculata_contig755.15529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2063bp|location=Sequence derived from alignment at H-paniculata_contig755:6645..8707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTTAGCTCTCTGTGCTCGTGAAAAACAGGTCCGAGAGATGATAATAAT
ATCTTTGTTCGATGAGGTGGAGTTTGACGATCGTGGAAAGGGAGGATACC
TAGACGATGAGGCATCTATACGGAGGGAGAAGCATTTCCTGGGCTCGGTC
ACCCTGCCATTTCAGGTGCGACATCTTGGTTGATGCTAAAGGTGACGTAT
GTACGTTACTGACACATGTACGCGTATAACGGACCAGCAATAGAAAAGGA
CTCATTGAGCATCTGACATCTATAAAGCTCAGGCAATTTTGGCAGGCACT
TCCGTGCGTTTTCAGTATCACGCTGTGAGGTCAGACATGGATAAACACGG
CAAAGCGAGAAGTGGCGGGTTGACTCAAGACATCAGCGTTTGCCCCCCTT
TCCTATCTCCGCACACCGAAACATACCTCTCTATTGCGATCAATGTGTCC
TGTGAATGAACGCAGAACACAGAGTTATATTGTTTCGGGGTGTCTCTGTC
TGAGGAGAAAATGCTGCCAGCATGTGCCATATTGGCTGAAGTTCTGTTTT
TACGTTTCTCGTCCGTCTTCGCCTCCAAATCCAGACCGTGTATCAAGCCG
GAAGAGTAGAAGGAGTACTCCGCCTAGACGCTCCGCCTGTCAATCTAGGT
TATGAGCAAGTGCACGGAGGGGTAACCGGGCTCGACCCTGGGGAAGTAGC
ATCGACGGCGGGGGGTGAGGGATAAAAATATTTGTACTTATGTGCTTCTA
TCTCGGCAAGGAGATTCCTTTCTATAGTCGTGTTGACAGTGCCCTGCGCC
TTTGCCTGCCTTTACATCTGTGTATGTGATGGTAGCTCCATTACGTGTCA
GTGGCACGTGCTTTGACTCAGCATTTTTTCGGAGACCTTCATGTTGTATG
GGAACACCATATGCAGCAGGTGTCTTGGCGTGGTCAACTCATGCGTTCTC
CGTTACTTGCGTAGAGGAACGCTACATGCCAGAAACCAAGCGCACCAGTT
GGAGTGGCAGATTCTGAGTTCGAGACCCCAGCAGAGATAGCAATGAAACT
CTTTGACCTACGTTTCCCCTAGTATCAACAAGCCAATTCTTGTCTCCCAT
AGTGTCCATCCTGTACGGGCATGCTCAATCTCCACGCTGGCACTCTCCAA
GCCGCCCTCCTCCCTCTCGCGCACGTGATCTCCCCACTCTCTCCATGATC
GTCTTCTTGAAACTCTTCTTTTGGGCTTTCACGATTCGGGTTTGCGTTCC
TGTGGGGCTTAACACGCACGTGGTCTCAGGAGAGGATGATATGCCCGACG
GAGATGGCCCAGATGCAGGCGTTTCTTTGATAAGAGGAGGCAGCGATCCA
GCATCTCCGGCTGCTCTCGTGCAGAAAGCAGATAGGTTGGTACTTGACAC
GGTAGCTGTTCGATCTAGTAAAAACATTTATCCGTATTGGTTAGGGTTTC
ATCATGTACACGGTGAACACGTTTCGATCAATCGGAATCACGGGACAAGC
CTCACGAGTATTCAGCAATGGGGTGCACCGACCCGGAAGGAATTTGCGCG
TATCCATTCTACAGCAATGTCGTGGTGTGGAGCTGATGGTTTAGTTGCCT
CTATGTTCGCCACATTACTATCTTACTACGCATTCCCCACATTCCCCCTA
CTCATCTTTCGAAGGTCTACCTACATCCGGGTTTTGGCTACACTGGATCC
TATCCCGATTGTTCTCGAGAAGGAAAGGTGTGATTCATCATTAACTGATT
CCTCGCTCTCTGGGTGGAGGAATTGATCAACACGTGTGTAGATAGGTTCA
TGATGGTCCCAACGCACTGTGGTCGTTCTCTAATGTACCCCAACGGAGAT
AACTGCATGTCCCTTATAGCGAAAACCCGAAGACCTCGAATCAATCACAT
ACTTGCCGTCTTGTCGCCTACAAAGCTAGCAGTTTCGAAGAAGTCTTGAT
ATTTGATTGTAGCATGTGCGCTTACGTAGAGCTTGGGTAATTGATTTTTT
CAAGGGCTGGTACAATGTTATTCGTGACCTTTTGACAGAATCCTGGGCAG
CAACCAGGAGCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig755:6645..8707+

>mRNA_H-paniculata_contig755.15529.1 ID=mRNA_H-paniculata_contig755.15529.1|Name=mRNA_H-paniculata_contig755.15529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig755:6645..8707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGACGGAGATGGCCCAGATGCAGGCGTTTCTTTGATAAGAGGAGG
CAGCGATCCAGCATCTCCGGCTGCTCTCGTGCAGAAAGCAGATAGATGCC
CGACGGAGATGGCCCAGATGCAGGCGTTTCTTTGATAAGAGGAGGCAGCG
ATCCAGCATCTCCGGCTGCTCTCGTGCAGAAAGCAGATAGGTCTACCTAC
ATCCGGGTTTTGGCTACACTGGATCCTATCCCGATTGTTCTCGAGAAGGA
AAGGTCTACCTACATCCGGGTTTTGGCTACACTGGATCCTATCCCGATTG
TTCTCGAGAAGGAAAGAATCCTGGGCAGCAACCAGGAGCCCAATCCTGGG
CAGCAACCAGGAGCCC
back to top