mRNA_H-paniculata_contig755.15527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig755.15527.1
Unique NamemRNA_H-paniculata_contig755.15527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig755.15527.1 vs. uniprot
Match: D7FPN2_ECTSI (CC2D2AN-C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.170e-12
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 PELGLNLGVGNCLPPRKRALRPQPKERAAATIQLDQCRLLLQIVSARNVPVRASEETGGFPTSPVQA 201
            P+LG+N   G+  P  KRALRP+PKER AAT+QLD      +IVSARNVPVR+ E  GG P S   A
Sbjct: 1157 PQLGINFEGGSFFPKPKRALRPEPKERTAATVQLD------EIVSARNVPVRSEEGAGGLPASTAMA 1217
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig755.15527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPN2_ECTSI1.170e-1256.72CC2D2AN-C2 domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig755contigH-paniculata_contig755:3731..5347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue6.8e-11
Seed eggNOG ortholog2880.D7FPN2
Preferred nameCC2D2A
KEGG koko:K16457,ko:K19352
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001654,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009888,GO:0009987,GO:0014020,GO:0016043,GO:0016331,GO:0021915,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0036477,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043226,GO:0044085,GO:0044292,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515,GO:1990403
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGsKOG3639@1,KOG3639@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig755.15527.1prot_H-paniculata_contig755.15527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig755 3731..5345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.0791354-CDS-H-paniculata_contig755:3730..37991622930927.0791354-CDS-H-paniculata_contig755:3730..3799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 3731..3799 +
1691481513.9648788-CDS-H-paniculata_contig755:3730..37991691481513.9648788-CDS-H-paniculata_contig755:3730..3799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 3731..3799 +
1622930927.101005-CDS-H-paniculata_contig755:4557..45961622930927.101005-CDS-H-paniculata_contig755:4557..4596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 4558..4596 +
1691481513.9777718-CDS-H-paniculata_contig755:4557..45961691481513.9777718-CDS-H-paniculata_contig755:4557..4596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 4558..4596 +
1622930927.122244-CDS-H-paniculata_contig755:5195..53451622930927.122244-CDS-H-paniculata_contig755:5195..5345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 5196..5345 +
1691481513.987832-CDS-H-paniculata_contig755:5195..53451691481513.987832-CDS-H-paniculata_contig755:5195..5345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig755 5196..5345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig755.15527.1

>prot_H-paniculata_contig755.15527.1 ID=prot_H-paniculata_contig755.15527.1|Name=mRNA_H-paniculata_contig755.15527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
PELGLNLGVGNCLPPRKRALRPQPKERAAATIQLDQCRLLLQIVSARNVP
VRASEETGGFPTSPVQARGGAGAGQMNGPSSPNDDD
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mRNA from alignment at H-paniculata_contig755:3731..5347+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig755.15527.1 ID=mRNA_H-paniculata_contig755.15527.1|Name=mRNA_H-paniculata_contig755.15527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1617bp|location=Sequence derived from alignment at H-paniculata_contig755:3731..5347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGAGCTGGGGCTGAATCTTGGGGTTGGGAACTGCTTACCCCCGAGAAA
GAGAGCACTGCGACCTCAGGTACGAGTCTTTGACTTGCTTGGAGCCGCTC
GCCGTACACCTTAGATTTAATGGAGGCTGAGGGACAACGGGGAGGTCAAT
TCACCGCATGAACCTAGGCAGAGTAAACCTGTGTATGTTATGGTTCGCGC
ATACGTAGTACGAAAAGAGCCTGTGCATGGTGCTAAGGTTCGCCGGGAAT
ACTTACACTGGCCACGTCGCTTTTCCACTCTACAAAAAGAGTGGCTGGAA
ACAGCAAGTAAAACAGTTCCGCTACGGGTAGAGAATATTAAAACTTTCGT
CGAGACCAAGAACGGGAAGTATGAGTTAAATCCTTGTGAAGAATAGCATA
TACAGTCTTTTTTCGGGGGCGTCATCGAAATTGTGGGCTTTCGAAACGTT
AAACGTTCAGTCATTCAAAGCCCAGTGTTGATGCCTCAACTACGGTAGTA
TTATTTTCATGGAATGTTTTCTGTGCATCTGCAAGAAAATAATGTTTTAC
CGCTCCATTCGTAGTGATGTCGTCTATGCTCGTTAGTGAAAAAGGACATA
CACGTACGACGACTTTTTTCGTCTCAAATTATCCCCAACTCTACCGGCAA
AGCTTGCCAGAAACGACAACGAAGTCACCGAAGATTTCGATCTACTCGAG
ATGTGCCCGTAGTATGCTTAAAACAAAGTCAAACACCTGACCGCGTTTCA
CATTCTACCATCTTTGCCGCGTCCCACCACTTATACTGCACACATACGCG
TTTAATTTATTTTGGGGGAATCTACAGCCCAAGGAGAGGGCGGCAGCGAC
GATTCAGCTCGATCAGGTACGGTACGTATTAAAAAGACAAACAATTGCAT
TTCGTGCTGCGCATGGCATGATCCATGGCGATTGCTGCTGACTGTTTTTT
TAATGAATAACATCCCCCGAGCTTGACAACTACCATATCAATATCGATGG
AGGGACAAAAGGAAAAACCTGACACAGACTGGATGTTTGATGCGATTTGT
TGTTCCTGTTCGCAATGGAGAGTACCGCTAGCGGCCTGGCGTTGTACATT
TTTTCCCACTGGTGCCGATTGGAAGACCTACATGTACGGTTCATCATGGC
TAATCGTCCACCAACGCTATAGAGCATATACACGAAATGTGTAGTGTGCG
TGTCTGCATCGGGGGCCCGGAGTAATATTATGCGGCTGTCACCTTGTTGA
CCCACTCGGTTTGTATTCGCTCCGATGTACATATCCGTAGCAAGATAGTT
CGTCACATAGATGTATCTTCCTCCCCCAGCTCTTGATCCTTCGAAGTTGA
AGAGCGAGCGACCGTACTTAGCTGACTAAAGCACAGAGGCAACAATATCC
AGGAGCAACATCCCCAATCATACCCCCATACGCTTTCCCGCTTGCTAAAT
GCCATGCATGGTCAGTGTCGTCTCCTGCTACAGATTGTGTCGGCCAGGAA
TGTGCCCGTCCGGGCGTCGGAGGAAACTGGAGGGTTCCCTACGTCGCCCG
TACAAGCCAGAGGCGGGGCCGGAGCAGGGCAAATGAATGGCCCATCATCG
CCTAATGACGACGACCC
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Coding sequence (CDS) from alignment at H-paniculata_contig755:3731..5347+

>mRNA_H-paniculata_contig755.15527.1 ID=mRNA_H-paniculata_contig755.15527.1|Name=mRNA_H-paniculata_contig755.15527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig755:3731..5347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGAGCTGGGGCTGAATCTTGGGGTTGGGAACTGCTTACCCCCGAGAAA
GAGAGCACTGCGACCTCAGCCGGAGCTGGGGCTGAATCTTGGGGTTGGGA
ACTGCTTACCCCCGAGAAAGAGAGCACTGCGACCTCAGCCCAAGGAGAGG
GCGGCAGCGACGATTCAGCTCGATCAGCCCAAGGAGAGGGCGGCAGCGAC
GATTCAGCTCGATCAGTGTCGTCTCCTGCTACAGATTGTGTCGGCCAGGA
ATGTGCCCGTCCGGGCGTCGGAGGAAACTGGAGGGTTCCCTACGTCGCCC
GTACAAGCCAGAGGCGGGGCCGGAGCAGGGCAAATGAATGGCCCATCATC
GCCTAATGACGACGACTGTCGTCTCCTGCTACAGATTGTGTCGGCCAGGA
ATGTGCCCGTCCGGGCGTCGGAGGAAACTGGAGGGTTCCCTACGTCGCCC
GTACAAGCCAGAGGCGGGGCCGGAGCAGGGCAAATGAATGGCCCATCATC
GCCTAATGACGACGAC
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