mRNA_H-paniculata_contig7549.15526.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7549.15526.1
Unique NamemRNA_H-paniculata_contig7549.15526.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7549.15526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7549contigH-paniculata_contig7549:9733..10289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.0165517-CDS-H-paniculata_contig7549:9732..99011622930927.0165517-CDS-H-paniculata_contig7549:9732..9901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7549 9733..9901 -
1691481513.94196-CDS-H-paniculata_contig7549:9732..99011691481513.94196-CDS-H-paniculata_contig7549:9732..9901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7549 9733..9901 -
1622930927.0304484-CDS-H-paniculata_contig7549:10218..102891622930927.0304484-CDS-H-paniculata_contig7549:10218..10289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7549 10219..10289 -
1691481513.9535296-CDS-H-paniculata_contig7549:10218..102891691481513.9535296-CDS-H-paniculata_contig7549:10218..10289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7549 10219..10289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7549.15526.1prot_H-paniculata_contig7549.15526.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7549 9733..10289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7549.15526.1

>prot_H-paniculata_contig7549.15526.1 ID=prot_H-paniculata_contig7549.15526.1|Name=mRNA_H-paniculata_contig7549.15526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MPCTCLHFPWLHCVSLSWLSSRPRVYARVCPKKKKERGKIPTAACESVLE
WKQQQLGTRGRCAARKRRFYIGKTKGGGG*
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mRNA from alignment at H-paniculata_contig7549:9733..10289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7549.15526.1 ID=mRNA_H-paniculata_contig7549.15526.1|Name=mRNA_H-paniculata_contig7549.15526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=557bp|location=Sequence derived from alignment at H-paniculata_contig7549:9733..10289- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATGTACTTGCTTGCATTTCCCTTGGTTACACTGTGTATCCCTCTC
TTGGCTTTCCTCTCGTCCAAGGTATGCTTCTTTCCTACCGGGCTTGAGTG
GCGCTTTCTAGTGCTGACTTGGTCATGCCTGCTTGTTTGTTTTGATTTTG
AATTAACCTTGAATCAAAATGAACATGTCAGTGTTAGTATTAATTGGTTT
TTACTACTCTTGACTGGGAAAGGACGAGACCGCAGGTGGGACAGAGAGCG
GATGTCTAGGCAGCAGTCAGGGCCCGAAGCAAGGTCGAAGATCCCTATTT
CTAATATCTCTGCTGTCTTGTTCGTCTGCATTTCTGTTCGTCTGCCTTTC
TGTCCGTCTCATCACCTTCCTCTGCTCCCATTCGATAGGGTGTATGCAAG
AGTTTGCCCCAAAAAGAAAAAAGAACGCGGAAAAATACCAACAGCCGCCT
GTGAGAGCGTATTAGAGTGGAAGCAGCAGCAACTAGGGACAAGGGGGCGG
TGTGCGGCACGAAAGAGGAGATTTTATATCGGAAAGACGAAGGGGGGTGG
GGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7549:9733..10289-

>mRNA_H-paniculata_contig7549.15526.1 ID=mRNA_H-paniculata_contig7549.15526.1|Name=mRNA_H-paniculata_contig7549.15526.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig7549:9733..10289- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATGTACTTGCTTGCATTTCCCTTGGTTACACTGTGTATCCCTCTC
TTGGCTTTCCTCTCGTCCAAGATGCCATGTACTTGCTTGCATTTCCCTTG
GTTACACTGTGTATCCCTCTCTTGGCTTTCCTCTCGTCCAAGGGTGTATG
CAAGAGTTTGCCCCAAAAAGAAAAAAGAACGCGGAAAAATACCAACAGCC
GCCTGTGAGAGCGTATTAGAGTGGAAGCAGCAGCAACTAGGGACAAGGGG
GCGGTGTGCGGCACGAAAGAGGAGATTTTATATCGGAAAGACGAAGGGGG
GTGGGGGGTGAGGTGTATGCAAGAGTTTGCCCCAAAAAGAAAAAAGAACG
CGGAAAAATACCAACAGCCGCCTGTGAGAGCGTATTAGAGTGGAAGCAGC
AGCAACTAGGGACAAGGGGGCGGTGTGCGGCACGAAAGAGGAGATTTTAT
ATCGGAAAGACGAAGGGGGGTGGGGGGTGA
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