mRNA_H-paniculata_contig7547.15525.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7547.15525.1
Unique NamemRNA_H-paniculata_contig7547.15525.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: D7G0J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J5_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 4.950e-131
Identity = 204/239 (85.36%), Postives = 223/239 (93.31%), Query Frame = 2 
Query: 1619 MSKRVASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFRELRGELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVDVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREEHG-----DGGSTG 2320
            MSKRVASL GAALR++ALREEGRAELVDLLESLPG+KCLVLESHIGGLLNHVIPEGSKLLREKGVT+FRELRGELG F DR+G   EPDH++YLVRASIP++K+IADQINSR +AGAAFDFRYKVYFVPHRTLICEQ+LQEERVLR+VDVG+YPLDLVPL+KDVLSLELDGLFRRVHL+GDTSGLSVVARS+QKLQ VFGTIPNVKAKG+AA+ACLHRAMRMRREE G     DGG  G
Sbjct:    1 MSKRVASLAGAALRVDALREEGRAELVDLLESLPGSKCLVLESHIGGLLNHVIPEGSKLLREKGVTYFRELRGELGAFEDRNGVKAEPDHIVYLVRASIPNVKIIADQINSRIKAGAAFDFRYKVYFVPHRTLICEQVLQEERVLRRVDVGDYPLDLVPLEKDVLSLELDGLFRRVHLDGDTSGLSVVARSVQKLQTVFGTIPNVKAKGTAAVACLHRAMRMRREEAGAERAGDGGEFG 239
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A6H5L2P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P5_9PHAE)

HSP 1 Score: 408 bits (1048), Expect = 1.720e-128
Identity = 200/228 (87.72%), Postives = 219/228 (96.05%), Query Frame = 2 
Query: 1619 MSKRVASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFRELRGELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVDVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREEHG 2302
            MSKRVASL GAALR++ALREEGRAELVDLLESLPG+KCLVLESHIGGLLNHVIPEGSKLLREKGVT+FRELRGELG F DR+G   EPDH++YLVRASIP++K+IADQINSR +AGAAFDFRYKVYFVPHRTLICEQ+LQEERVLR+VDVG+YPLDLVPL+KDVLSLELDGLFRRVHL+GDTSGLSVVARS+QKLQ VFGTIPNVKAKG+AA+ACLHRAMRMRREE G
Sbjct:    1 MSKRVASLAGAALRVDALREEGRAELVDLLESLPGSKCLVLESHIGGLLNHVIPEGSKLLREKGVTYFRELRGELGAFEDRNGVKAEPDHIVYLVRASIPNVKIIADQINSRIKAGAAFDFRYKVYFVPHRTLICEQVLQEERVLRRVDVGDYPLDLVPLEKDVLSLELDGLFRRVHLDGDTSGLSVVARSVQKLQTVFGTIPNVKAKGTAAVACLHRAMRMRREEAG 228
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A1Z9QCA2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QCA2_9BACT)

HSP 1 Score: 241 bits (616), Expect = 2.650e-66
Identity = 113/215 (52.56%), Postives = 161/215 (74.88%), Query Frame = 2 
Query: 1652 ALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFRELRGELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVDVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREE 2296
            AL  + +R++G++EL+++L++L G KCLVL++ +GG LNH++ +GS+LL+E GV FFRELR ELGDF   DG   +PDH++YLVR SI HMK+IA QI +R + GA   FRY+VYFVPH+TLICEQ+L++E VL  +D+GEY LDL+P D D++SLEL+  F    L+GD + L  VA+S+ K+Q+ +G IPN+K+ G AA     + +RMR E+
Sbjct:    2 ALDFKTIRDDGQSELLEILDTLQGRKCLVLDTQLGGRLNHILADGSRLLKENGVVFFRELRAELGDFPIADGG--DPDHILYLVRPSIAHMKLIASQIRTRIKQGAPEAFRYQVYFVPHKTLICEQVLEDEHVLHHIDIGEYHLDLIPFDGDLISLELESCFVEYKLDGDATLLHSVAQSLLKVQSFYGLIPNIKSIGPAARTVCSKMLRMRMEQ 214
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A835YTK2_9STRA (Sec1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTK2_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.260e-65
Identity = 130/238 (54.62%), Postives = 167/238 (70.17%), Query Frame = 2 
Query: 1619 MSKRVASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFREL-RGELGDFRD-RDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVDVGEYPLDLVPLDKDVLSLELDGLFRRVHLE--GDTS-------GLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREEH 2299
            M++RVASL GAAL + ALRE+ R EL+ LL +LPG KCLVL+  +GGLLNHVIPEG+KLLREKGV   R+L  G+LG  +D   G    P+HV+YLVR S+ H K+IA Q+    RAG   D+RYKVYF P RTLICEQ+L++E V  ++D+ ++PLDL+PLD D+LSLEL+G      L   G  S       G++ VARS+ +LQA++G IPNVKA G  + A L  AMR RREE+
Sbjct:    1 MTQRVASLEGAALNLIALREDCREELITLLTALPGRKCLVLDRALGGLLNHVIPEGAKLLREKGVVHVRQLGSGDLGLPQDPHTGKPELPEHVVYLVRPSVAHTKLIAMQVQDGVRAGVPLDYRYKVYFAPQRTLICEQVLRDEGVASRIDIADHPLDLIPLDTDLLSLELEGAVGAALLTSTGGASWGCDAGAGVTAVARSLIRLQAMYGAIPNVKAIGPNSAAALRLAMRTRREEY 238
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A7R9U870_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U870_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.030e-50
Identity = 98/214 (45.79%), Postives = 140/214 (65.42%), Query Frame = 2 
Query: 1661 IEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFRELR-GELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVDVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREEH 2299
            +  +R+E R EL+++L + PG KCLV +  I GL+NHV+ EGSKLL E GV  FRE++ G L D R    +  EPDHV+YL R  I  ++ IA  + SR    +A +  Y  YFVPHRTL CEQ+L++E VL  + +GE+ +DLVP D+D++S+EL   FR + ++ D + +    R++ + QAV+G IPNVKAKG  A   L R +RMR ++H
Sbjct:   14 LSLIRDESREELLEILSAFPGTKCLVFDPDITGLVNHVVVEGSKLLSEAGVALFREIKDGALDDLRFGKEDR-EPDHVLYLTRPRIKRVQQIAAHVKSRAAMPSAGNLSYGCYFVPHRTLACEQVLEDEGVLNAITLGEFHMDLVPFDRDLVSMELKDSFREIFVQQDITAVGSTVRALSRWQAVYGFIPNVKAKGHVAEKVLRRMLRMRVDDH 226
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A7S2DGE7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGE7_9STRA)

HSP 1 Score: 180 bits (456), Expect = 3.230e-44
Identity = 99/219 (45.21%), Postives = 144/219 (65.75%), Query Frame = 2 
Query: 1634 ASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFRELRGELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQI--NSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVD-VGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMR 2281
            ASL  A + ++A+R++ R+ELV++LE   G K LVL+  I GLL+H++ E  KLL++ GV    EL  E+ D  D+     E +HVI+ VR  I HMK I+ QI  + R +   + + RY +YF PH+TL+CEQ+L++E VL  V+ +GEY L+L+PLD D++SLELDG FR   LEGD S L  V +S+ KL++ +G IPNVK+ G  +    ++ MR
Sbjct:    4 ASLADAPINLQAIRDDERSELVEILEMHHGEKHLVLDKKISGLLSHILSEAPKLLQDNGVVQISELGSEIQD-EDK-----EYEHVIFFVRPVIEHMKAISRQILMSRRKQKNQSGESRYSIYFSPHKTLMCEQVLEDEGVLDFVEPLGEYQLNLIPLDTDLISLELDGCFRDCKLEGDMSSLQAVTQSLIKLRSFYGLIPNVKSIGPLSRNVCNKLMR 216
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A7S3K6M0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6M0_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.150e-42
Identity = 95/224 (42.41%), Postives = 135/224 (60.27%), Query Frame = 2 
Query: 1628 RVASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFRELRGE-LGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDF-RYKVYFVPHRTLICEQILQEERVLRKVDVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRRE 2293
            +   L  A L +E +R + R EL+++L+  PG+KCLVL++ +GG LNHV+ EG++LLRE GVT FRELRG+ LG F D      EP H++YLVRA    M+ IA Q+    R+G   D  R  +  +P RT +C +IL+ E VL  +D+ E  +D + L+KDVLSLE+D  F  + L GD   L   A +  KL+ +FG    +++ G A  A   R  R RR+
Sbjct:   31 KACKLDEAYLDLELIRNDNRTELIEILDRWPGSKCLVLDAALGGRLNHVVVEGARLLREHGVTTFRELRGDDLGGFED------EPAHIVYLVRALPELMRPIAQQVKGLVRSGFTTDEKRLHIVLLPRRTFVCSKILETEMVLPFLDITELCVDFIALEKDVLSLEIDSSFAEIKLSGDPKSLDTAALAYIKLENLFGRARTIRSLGPAGRAVAERIARYRRK 248
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A7S1CE88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CE88_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.360e-42
Identity = 94/232 (40.52%), Postives = 141/232 (60.78%), Query Frame = 2 
Query: 1631 VASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIP--EGSKLLREKGVTFFRELRGELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKV-DVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREEHGDGGST 2317
            V++L  A + + ALRE+G  +L D+L+ +PG K +V++  IGG L  +IP  + + +L+E GV       G L +    +   T  + V+++VR  +  M  +A+QI  R    A  D    VYFVP RT ICEQ+L+EE V   +  +GE+PLDLVP D DVLS+E+   FR   L+GD++ L+ V +++QKLQ +FGT P++KAKG+ +   L   MR+RREE     +T
Sbjct:   31 VSTLQNAPINLLALREDGAQQLFDILDRMPGKKFVVMDKTIGGPLRLIIPPPDNNAVLKEHGV-------GGLVNGVPTEPLETACESVLFIVRPHLDTMHAVAEQI--RHFLAARQDKHVAVYFVPRRTFICEQVLKEEGVFADIATIGEFPLDLVPYDDDVLSMEMPQAFRECLLDGDSTSLNFVVQALQKLQTLFGTFPHIKAKGTLSKIVLDMMMRIRREEEAPASTT 253
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A4D9D766_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D766_9STRA)

HSP 1 Score: 171 bits (432), Expect = 2.460e-40
Identity = 94/246 (38.21%), Postives = 153/246 (62.20%), Query Frame = 2 
Query: 1634 ASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFF-RELRGELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQIN---------------SRTRAGAAF--------DFRYKVYFVPHRTLICEQILQEERVLRK-VDVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREE 2296
            ++L  +A+ +  LR +GR EL+D+L++  G K LVL++ + GLL H++PEG+  LR+ GV    R L+ EL  F   +G   EPD+++Y VR S+ +M++++ Q+                +R+ +G+          + R+ +YFVPH+T +CEQ L +E VL    +VGE  LDL PLD D++SLE+D  F+  +++GD++ L+ VARS+QKL+  FG IP++KAKG+ A   L R   ++R++
Sbjct:  208 STLEDSAIPLSKLRSQGRKELLDVLQAARGRKALVLDTALRGLLAHIVPEGTNFLRQHGVVHLCRGLQTEL-TFVTPEGRDDEPDNILYFVRPSLSNMRMLSAQLKKWNIKRQMGGGRKALTRSASGSGSGGGPYQPKECRHLLYFVPHKTFLCEQALSDEGVLECFAEVGECHLDLFPLDTDLVSLEIDTSFKDTYVDGDSTMLTTVARSLQKLEENFGVIPHIKAKGTHAAVALQRFFNLKRQQ 452
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BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Match: A0A453PVG5_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PVG5_AEGTS)

HSP 1 Score: 158 bits (400), Expect = 2.780e-40
Identity = 91/223 (40.81%), Postives = 137/223 (61.43%), Query Frame = 2 
Query: 1628 RVASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLNHVIPEGSKLLREKGVTFFRELRGELGDFRDRDGNATEPDHVIYLVRASIPHMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVDVGEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFGTIPNVKAKGSAALACLHRAMRMRREE 2296
            ++ +L  AAL + ALRE+ + EL+ +++S+ G KCLV++  + G L+ ++   +  L+E G     ELR         D   TE   V+YLVR+ +  MK +A+QI +    G   +  Y +YFVP R + CE+IL+EE+V +K+ +GEYPL LVPLD+DVLSLELD   +   +EGDTS +  VA++I KL+  FG IPN++AKG A+         M+ E+
Sbjct:    3 QIPNLDNAALNLTALREQSQKELLSIIKSIRGKKCLVIDPKLAGTLSLILQTSA--LKEYGT----ELR-----ILSADPLQTECPKVVYLVRSQLNFMKFVANQIKNDESKGLQRE--YHLYFVPRRIVACEKILEEEKVHQKLTIGEYPLYLVPLDEDVLSLELDYSLQECLIEGDTSSVWHVAKAIHKLEFAFGVIPNIRAKGVASTKAAELLNHMQLED 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7547.15525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0J5_ECTSI4.950e-13185.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2P5_9PHAE1.720e-12887.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Z9QCA2_9BACT2.650e-6652.56Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A835YTK2_9STRA1.260e-6554.62Sec1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7R9U870_9STRA3.030e-5045.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2DGE7_9STRA3.230e-4445.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3K6M0_9STRA4.150e-4242.41Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1CE88_9STRA8.360e-4240.52Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A4D9D766_9STRA2.460e-4038.21Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A453PVG5_AEGTS2.780e-4040.81Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7547contigH-paniculata_contig7547:2..7305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score408.7
Seed ortholog evalue1.9e-111
Seed eggNOG ortholog2880.D7G0J5
KEGG koko:K20182
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
EggNOG free text desc.vesicle docking involved in exocytosis
EggNOG OGsCOG5158@1,KOG1302@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons7
Model size2328
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7547.15525.1prot_H-paniculata_contig7547.15525.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7547 1620..7305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.8409302-UTR-H-paniculata_contig7547:1..16191622930926.8409302-UTR-H-paniculata_contig7547:1..1619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7547 2..1619 +
1691481513.8639812-UTR-H-paniculata_contig7547:1..16191691481513.8639812-UTR-H-paniculata_contig7547:1..1619Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7547 2..1619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.8571827-CDS-H-paniculata_contig7547:1619..17931622930926.8571827-CDS-H-paniculata_contig7547:1619..1793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 1620..1793 +
1691481513.87483-CDS-H-paniculata_contig7547:1619..17931691481513.87483-CDS-H-paniculata_contig7547:1619..1793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 1620..1793 +
1622930926.885286-CDS-H-paniculata_contig7547:2519..26271622930926.885286-CDS-H-paniculata_contig7547:2519..2627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 2520..2627 +
1691481513.886824-CDS-H-paniculata_contig7547:2519..26271691481513.886824-CDS-H-paniculata_contig7547:2519..2627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 2520..2627 +
1622930926.9022815-CDS-H-paniculata_contig7547:3084..31741622930926.9022815-CDS-H-paniculata_contig7547:3084..3174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 3085..3174 +
1691481513.8946745-CDS-H-paniculata_contig7547:3084..31741691481513.8946745-CDS-H-paniculata_contig7547:3084..3174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 3085..3174 +
1622930926.9202764-CDS-H-paniculata_contig7547:3551..35901622930926.9202764-CDS-H-paniculata_contig7547:3551..3590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 3552..3590 +
1691481513.9027085-CDS-H-paniculata_contig7547:3551..35901691481513.9027085-CDS-H-paniculata_contig7547:3551..3590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 3552..3590 +
1622930926.9354439-CDS-H-paniculata_contig7547:5182..52961622930926.9354439-CDS-H-paniculata_contig7547:5182..5296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 5183..5296 +
1691481513.9107854-CDS-H-paniculata_contig7547:5182..52961691481513.9107854-CDS-H-paniculata_contig7547:5182..5296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 5183..5296 +
1622930926.9490585-CDS-H-paniculata_contig7547:5809..58751622930926.9490585-CDS-H-paniculata_contig7547:5809..5875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 5810..5875 +
1691481513.921512-CDS-H-paniculata_contig7547:5809..58751691481513.921512-CDS-H-paniculata_contig7547:5809..5875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 5810..5875 +
1622930926.9680784-CDS-H-paniculata_contig7547:7188..73051622930926.9680784-CDS-H-paniculata_contig7547:7188..7305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 7189..7305 +
1691481513.931867-CDS-H-paniculata_contig7547:7188..73051691481513.931867-CDS-H-paniculata_contig7547:7188..7305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7547 7189..7305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7547.15525.1

>prot_H-paniculata_contig7547.15525.1 ID=prot_H-paniculata_contig7547.15525.1|Name=mRNA_H-paniculata_contig7547.15525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MSKRVASLTGAALRIEALREEGRAELVDLLESLPGNKCLVLESHIGGLLN
HVIPEGSKLLREKGVTFFRELRGELGDFRDRDGNATEPDHVIYLVRASIP
HMKVIADQINSRTRAGAAFDFRYKVYFVPHRTLICEQILQEERVLRKVDV
GEYPLDLVPLDKDVLSLELDGLFRRVHLEGDTSGLSVVARSIQKLQAVFG
TIPNVKAKGSAALACLHRAMRMRREEHGDGGSTGEP
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mRNA from alignment at H-paniculata_contig7547:2..7305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7547.15525.1 ID=mRNA_H-paniculata_contig7547.15525.1|Name=mRNA_H-paniculata_contig7547.15525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7304bp|location=Sequence derived from alignment at H-paniculata_contig7547:2..7305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAGGCAGTGTAGGAGTCCCACCTACTAAAGACCTCTGACTAGACTT
CCCGTCATGCTCAGTACACGAGCTACCCTACCCGTTCGGGCGTAGGTCCA
TGGGTACACTATTGTATGCACCGTCTGTACCTCTATACTCCACTGTATTT
CACTATCAACTCGAACGTTGACGAGCGAGTGGACTGTTGCCCCCACCGCG
CGATAATACAGGCGAGAACCAAGGCATTGCACTCCCAGATTCGGGCGGGT
TTCGATAGGTAAATTGATCCACTGCGGAATAAACAAAAACAAAATACACT
GCACTGTACTGCAGAGCCAACGTAAGCATAGCAGCACCAGCACAGCTTCA
CCATGGAATGTAGTGTTCTGGTAGCGGTGTAAGTGCTGCCAGAGCAGCAT
GTTGGAGCAGTGCTTAAGGTGTAGGTAGCTGTTGGGATAACGTCACTTCC
AAGTTATAGGCTCATGAAAGCTTATTTCGGAGCAGAAGTACGCTGACAGT
CCCGCAGGTTAAAAAAAAATGGATAGAATAGGTGCACGGATATTAATAGC
TGTCTATTTAAGAGGAATCAAGATTCAAGAGAGGTTCAATTTTCTTGTCA
CCAATTTGCAGATTTTGCGGAGGCTTTGGGCTGCGCAGGCCGAACGTCTC
TTAAATCGAGTAGGTAGGTGGAAAATTACCATTGCTGTACATCATCCACT
TGACATTACCCAGCTATTGATCAAGTCGAATTGAGCAGACGACCACGAAA
TTATCTTGTTTAAACGCCTTTTTTGCTGCCGACATAGTACGACTTCTTTC
AGCTCAATGTATGACGATGACCACGAGTGTGTTTATTCGACACTATTCAC
AATCTCTGATGAATGGTTTTGACGGATTTAGGATACATTCCTCTTGAGTC
AAACAGCAGAGGGCTAAGACTCAAGAGAGGGTTTTTCGGTTTGTCATCAC
CCTCACTTAAACTCGGACACCCACTGTACACATCAGACGTATGAAATTAT
AGGAGTGAAACGGACCCCATACCTGTGGCAGGCTGACTTCGTCGCTGAGA
AAAGTAATTATTTTCGGATGAGTGCGTCACGGTACCTACCGCCCTTATTG
GCGTATAGAGCGTTACAACAGTCAGCCGGCTACTCTGCAAACAAAGCACT
TGATAATGAATGTGAAACTGTTCCGAAAAATCACTACTATTACAAGAAAA
TATTCTGAAACGACCATCACCTTCGCCATATGATACCATTACTCAGTACA
ACACTCCAACGTGGTGATGGCCGTGATGGCCATAACGGGGTCCGAGTTAG
GTACGCTACTGGCGTAACCGTGGCCTTTTAATCATGAAGTTATACGCTAA
GGTGGTCGTGGTCGTTCCGGAACAGCTGTCGAACACACTCACGTGTTCCA
AGTGCTTTCGAATTTTGGAATCTTCAAGGGTTTGTTTTTTCAATGTTCTG
AACACGTAATGAAAGTATCGAATAATCTGGCTTGTCTTGTTTTCCATTTT
TCCCCATTTTCCCCATTTTTCAACCTGCACAAGACAGACATCGCCAGGCT
TAGCAAGCCGTGCACTGTTGTGACCGTGGTTGTGAACAAGGTAAATACTA
CTCACCCTATTGCTGAGGATGTCTAAGCGAGTTGCCTCGCTGACGGGAGC
GGCCCTGCGCATCGAGGCATTGCGAGAAGAGGGGAGGGCAGAGCTCGTGG
ACCTGCTGGAATCGTTACCCGGAAATAAGTGTCTGGTGCTGGAGAGCCAC
ATCGGGGGACTACTCAACCATGTCATTCCTGAGGGGTCTAAGGTTCGTTT
TGCCTGGTTCTTGGCCTAGCGCATCATCCAGCCTGCCGCAAAACCGCCCA
AGTGCAAGGGCGCGGGAATATACGCGAAGGAGCCCAAATTATGTTTTTTG
TTGGCCGATAATGGCGTATTATAGACCGCGGGGTGTGAGGTTTATCGGTG
TCCAATCAGACGATGCCAGATGGGTGTTAGGCTTGTTTGGTATGGTATGT
TTGTTGGCCATCTGCTGTATCAGATGAGGGATCCTCGGTGTGCTCTCTTT
TTAGCTGTTACATTGTTGGAATGAGCATACAAATTTGGATCGAGCGTGCC
TGTAGTTGAACATGCTGACGTTCCGACTCTGTTGAGGGAGACCGCCAGAC
TTGAAATCTTGGCTAAGGAGAAATTTACTTCCCTATTATATATTTTTTCA
TGCACCTCCCTCAAAGTTTGCATGCCCTGCATGCTTGCCTACTGTGGTAT
CTATCAGGGCGTTGGTGTAAGTGCAACGTGGAGTGGCTGTGAGAGAAGGG
ATTCATGATCAAACGGCGGATTGGCCGTGCAACGCTGTGTGATGCTGCTT
TTCGTTTACCGGAGTTCGATTCTTGTTTAGTTGTACTTACCGTGGTTGTG
AGAAAGAGGAGTCGTGTGTATTTTCAGAGTCGCATTTTGCCTACAACGCC
GGAATATCCTCACGAAGATTTTCATCTCTCTTTTTGTTCTGTTGGAATTT
TGATGATATACATGTCAGTTGCTGCGGGAGAAAGGAGTGACGTTCTTTCG
CGAGCTGCGGGGAGAGCTTGGTGACTTTCGGGATAGGGATGGAAATGCCA
CCGAGCCGGACCACGTGATATACCTGGTTAGTCAGGTTTTGAAGTTGACA
CACGTTTGTGGTGTTTTGGAAATTGTTTTCCTCCGATAGCTGTCGCGATT
TAACTATGTCGATACGAGAAAGGGATGTCGTGCGATGGTATTCGTCCATA
CGGTGGCCAAAAATATCGACCTCTAAAATTTTCCGCAGTGAACTGTCATA
ATGTTACCTGTAGTTACCTCGAAAGCATCGTGCTCGCTGACACCCGCACC
AGTATGCTGCGTTTTCACCTTTAGTGCTTTCTTCTGGTGTCTTGGGAAAT
TATTGTCTCGTGCGTGAGGTTCCCTTGAATGCTACACTTCTGCTGTTTGC
CCTGCCCATGTTTGGCAATATGTTTGTCCAGGCTTCCTAGCATTACTGCG
TGTCTTATGCCTTCCTGAAACTGCCTCTTGTTTTTCTCCTTGATTTTGCC
ACCTATTTTTTCTCGCCCTATTTGGGGGGGTAGGTGAGGGCGTCTATCCC
GCACATGAAAGTGATAGCGGACCAGATCAACTCCCGTACTAGGGCCGGCG
CCGCGTTCGACTTTCGCTATAAGGTTAGCGTGCTGCCCCAAGGCTCAAGT
TGCTGTGCACGATCGGCCAGAGGCGTTGTTCGTCAATGTCAAGAGTTATG
TAGATGTTCGAGTTGCCATTCGTAGTTTGTGTCACGCTGTCTTTCGTCGT
CTTCCCATAATTACTTTTTGACCTTGTCACTCGACGTAACTAACCAAACG
TTTCGGGCTAACTCGTGGTTAAGAACCCAGCGCCTAGTCCCGAGCTCTCA
CGTAGGTGTCAGCAGTTGACGGAAGGTATACGAAGAAAGCTGCTCGCCCT
CACTGCGCGAAACCACAGACGCATACACACATACAGGCACACATGGTAAG
TTCCTTCCGTCTGTGCGTTCATCCCTCTCCTTCCCTCTATTCCCCGCCAG
GTTTACTTCGTTCCGCATCGAACACTTATCTGCGAGCAGGTGAGTTGTCG
TGAAGTTGTTAATACACGTAGCTCGGTGCTCCACCGATATGTACGATAGT
CGTCTGTTGTTTTTCTCCGACACATTTGTCCAATCTCTCAGCTTCTAAAT
CAAAGAATACAAGTACATATGCAGTGAAGTAGTTGTGCCGACCAGCGGCA
GAGTCGGGGTTAACCTTTCGGGTGCCGTCTCTGCAGCTGGCAAAACTCAC
GACTAACTGAAACCACAGGGGGGGAACAGGTCGGGTTTTTTTACCCAACG
CAACCCTGGCAACATGATTACTGCGATAGGGTACTGCTGCTATTGAAGCA
GTCCAGTACAGACAGTACGGACAGTTCAGAGAGGAGTTGCCATAGTTCCG
CACACCACGTCGATAGTAGGATAGAAACGCAGAGCATAAACTACATGATG
AGTGATTGACGGCGGTGATGAGTGTGTCACACAGACCCGCAAACCAGAGC
GTGCAATCAAAATAATAATCCACGTCGTCATCGGGCCATGGCCATGCATG
ATGTCCGTGGTCGCAGCAGGTGCTGCAAGCTCCCGGACCACACAGCCAGC
CCATTGACTACTCATATTCGGAGAAATGTTTTCATTCCATTCGTTTTACT
CGACCCTTTCTGAGCGCCGTTACGGGTTCGGTGGAGATTCGATCTATGCG
TCGTTGAACAAACATCAAATGCGCATTTGTGATCGCCAGAACTTTTGTAA
TGGTGGAAAACTTCTTGGGCGTTATCGATTGCCAAACGGCCGTGCCGTCG
AGCAAACGGCCATCAGAAGCGCTCTGATGGGAACAAAGCTCCGTCCTCTT
GAGGACCCGTGGTCAATGCTCTAACAACAACGGTGGATAAAACATGACTA
CGCCCCTGGTACCACCACCCCCTGCCCGACCGGACTGTCAGATCCAGTTT
TGTTCCGAAAGAGTGCCCGGTGTGGGAAGGGTTGATCAAATTAAAGAAGC
TGTGAGCATAGAAATGGTTGGCGGTTATTTCTTTTTGTTATCCACGCTCT
GTTGTGCGCCGACGCGAGCAAAACCAACACCAGAACTACCGCTGCCCCCA
TAACCTTAACCTCCATCTCTTTGAGCCTAGGGTGCGTTGACAGAGCTCAA
ATCGGGGCCGTTGACGCTGTTTGCGAGCACAACAGGTTATTGGCCGACGT
CGTGAGGCATTCAGGATGTGACGTCGGCGTGGTGTCACCTGTCATTGTAT
CAATAGTACGTTGAGTTTTATGAATCAACCATTTCATTGGAGAAAATGGT
AAAATTCTACAATTCACGTCGTGCTAAAGGGACCAACATTGTTTCTATTC
TTGCGGTCATCAACCCAATATTTTGTACGGTGCCAAGATGTTTGCGCAAA
ATCACGCGAAATGTGCTGGACCAAAAACGCATCTGGGGTTGAGTTGCGTG
CAATGAAGCGGGGAAAAACGTTATCTTGATGCACGGTTCACGAGTTTTGT
GTGGGGTTAATGTTTTCAAGGAGAAGATAGCACACGCCTACGCTGTAACA
AGTCCTTGTTCGTCTGTACGCACGTCTATATTTCCCCCCCGTATCTCTCT
ACTATCCGCCTGTGTTCCTTTCTTGGTGCAGATTTTGCAAGAGGAACGTG
TTCTTCGAAAGGTAGACGTAGGTGAATATCCTCTGGACCTCGTGCCTCTT
GACAAGGACGTGCTCAGCCTCGAGCTTGACGGTCTCTTCAGACGGGTGAG
CAAAGCGAAACGCAACACCTGGTCATAATTCACTCAATTTTCGTTTCCGT
CACACTCCGCTCCCTTTCCTTTACTAGAAACGCTTGTCGGGCTGCAGGCA
CACTGCCAAGGCACAGTGGGATACCGATGGAATTTATTTCTTGCCAGCTT
GTAACCGAACCTCGTGACGGCCGACAACATAGATTTCGTAACGACCAGTC
GTGAAGAATGACGTCGACGTTTACAGAAATGCTGAACCAGCTAGCTCCCG
AGGCAGCTGGTTGCCGTGCCTCAGGTTTGTGCATGGGTCTTTTTCTCCCG
AATTCAGTGTATAGAGCGAGGACGTTCACACACCGGATTCGTTGCATATA
AGGGCCAAATGAAAAACAAGTCTTGCACACCTGATTAGGAGCTCATGTGC
TCCTACATTTAGGGTCGTTGAATTTAGTGTGCGCCACGCACACGGTGGAG
CCGGAGTGATGTGTTAGCGACCATGAGTGTGTGTGTTCTTCTTGCGTGGA
CGGAACAGGTGCATCTGGAAGGGGATACGTCGGGTCTTTCGGTGGTGGCA
CGTTCCATTCAAAAGCTGCAAGCGGTGAGATTGAGAAGAACTCTTGGTTC
ATATCGTTTTTTTGGTACATTTTTCCTGTGCTTTGATTTTCTTTCTCGAG
TGCCTTGGCCCCAAGTACAGTACAACGCGGTGAACGTGCGGTTCAGGTCC
TCATGTTTACGGTAAGCAATTGGACCCAGGGAATGTTTTTTCTGGTCTTA
AGATTTATCGAATTTATCCAAAAAGCGAGGGTGTAAACTGGCGAGCCTCT
GACCGATTGTCAAGTTTTGCTATCTGTAGAAAGTTGTTGACTCTGTCAGC
AGACTTTTCCGAACTCGACTCCAAGGTGTAGGTGTCGCTTACTATTCAAC
GTTAGTCCGCAGCAGCCCTTCATCTTCTATTTATTGCTGAGGTTGCATGC
GCAATTTCAATCCAAAGTAGCTCCATACACCCGTCAAAATAGTTGAGCAA
TGGAACCAGTAGCAAGACATCACGACAACGACCCGAGCGAGAACACTTGT
ACGAATTTCGTACCAGTATAATGTTCCGTGAAACGATTACCAACACAAAA
ATAAACTCTTCGAAAAGCGTGAACACGTTTTGTTCGAAACATGAGCATGC
TTCTACCATGATGAAAGCGTTTTTTGAAACATGAACAATGAGAAATCTCG
ATGGGACACCGCCTGCTCTATGCGGATTGGTTCTAAGTCTTAGGATGTAG
TGCGGAGCAAGCACTTGGGTTTTATTCTGTCGCACATGGAACCGGCCATC
CAGAGTCGTACACAGATAGAAAGCCGTTCCGAAAAAGGGACAAAATACAA
TTGATCGTTGTGTAGGGGTCCGGGGTTCAGGAACCCCAGGAATGTGCTCT
CCACAAGACGCTTGTAATAGGCATGAACCTGCTTCGAAAATCTTCACCAT
AAAATCTATTTCCAAAAGACAAATTACCTTACCGGATCAGTTGAGGAGGA
TTAAAATCAAAACATAACACCATTCAGCTAACGCCCGATAGAATCGAATT
GCAAGGTAACCTGCAAGTATCACCTAACCGGTTTTACGGTTTTTGGGCTC
ACCTGAAGTTTGCGCTCACCTGGGCGTGGTCGGTGTGTTGTGTTGCGAGT
TGATTGGCAGCGGGTACACATGGGGTTATATTAAAATCAAAGTGTTACGC
CATTCAGTTAACGTTTGATAGAATCGAAAGTGCAGCTTAGCCTTCAAGAT
TCATCCCTTCCCTTCCGCCGCCCCCGCGCTCGCCGACGCCCACTCGCTCC
CCTAAATACTTGGCAAAGTCAAAGGCATTTTTATGATCAGTACCTCTGAT
GTATCGCCCTTCCCTACGTCTATATAATGCATATCAGGTATTCGGTACAA
TACCGAATGTGAAGGCAAAAGGCTCTGCTGCCCTAGCCTGTCTCCATCGT
GCCATGCGCATGCGGAGAGAGGAGCACGGAGATGGGGGTTCGACAGGGGA
ACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig7547:2..7305+

>mRNA_H-paniculata_contig7547.15525.1 ID=mRNA_H-paniculata_contig7547.15525.1|Name=mRNA_H-paniculata_contig7547.15525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig7547:2..7305+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTAAGCGAGTTGCCTCGCTGACGGGAGCGGCCCTGCGCATCGAGGC
ATTGCGAGAAGAGGGGAGGGCAGAGCTCGTGGACCTGCTGGAATCGTTAC
CCGGAAATAAGTGTCTGGTGCTGGAGAGCCACATCGGGGGACTACTCAAC
CATGTCATTCCTGAGGGGTCTAAGATGTCTAAGCGAGTTGCCTCGCTGAC
GGGAGCGGCCCTGCGCATCGAGGCATTGCGAGAAGAGGGGAGGGCAGAGC
TCGTGGACCTGCTGGAATCGTTACCCGGAAATAAGTGTCTGGTGCTGGAG
AGCCACATCGGGGGACTACTCAACCATGTCATTCCTGAGGGGTCTAAGTT
GCTGCGGGAGAAAGGAGTGACGTTCTTTCGCGAGCTGCGGGGAGAGCTTG
GTGACTTTCGGGATAGGGATGGAAATGCCACCGAGCCGGACCACGTGATA
TACCTGTTGCTGCGGGAGAAAGGAGTGACGTTCTTTCGCGAGCTGCGGGG
AGAGCTTGGTGACTTTCGGGATAGGGATGGAAATGCCACCGAGCCGGACC
ACGTGATATACCTGGTGAGGGCGTCTATCCCGCACATGAAAGTGATAGCG
GACCAGATCAACTCCCGTACTAGGGCCGGCGCCGCGTTCGACTTTCGCTA
TAAGGTGAGGGCGTCTATCCCGCACATGAAAGTGATAGCGGACCAGATCA
ACTCCCGTACTAGGGCCGGCGCCGCGTTCGACTTTCGCTATAAGGTTTAC
TTCGTTCCGCATCGAACACTTATCTGCGAGCAGGTTTACTTCGTTCCGCA
TCGAACACTTATCTGCGAGCAGATTTTGCAAGAGGAACGTGTTCTTCGAA
AGGTAGACGTAGGTGAATATCCTCTGGACCTCGTGCCTCTTGACAAGGAC
GTGCTCAGCCTCGAGCTTGACGGTCTCTTCAGACGGATTTTGCAAGAGGA
ACGTGTTCTTCGAAAGGTAGACGTAGGTGAATATCCTCTGGACCTCGTGC
CTCTTGACAAGGACGTGCTCAGCCTCGAGCTTGACGGTCTCTTCAGACGG
GTGCATCTGGAAGGGGATACGTCGGGTCTTTCGGTGGTGGCACGTTCCAT
TCAAAAGCTGCAAGCGGTGCATCTGGAAGGGGATACGTCGGGTCTTTCGG
TGGTGGCACGTTCCATTCAAAAGCTGCAAGCGGTATTCGGTACAATACCG
AATGTGAAGGCAAAAGGCTCTGCTGCCCTAGCCTGTCTCCATCGTGCCAT
GCGCATGCGGAGAGAGGAGCACGGAGATGGGGGTTCGACAGGGGAACCGG
TATTCGGTACAATACCGAATGTGAAGGCAAAAGGCTCTGCTGCCCTAGCC
TGTCTCCATCGTGCCATGCGCATGCGGAGAGAGGAGCACGGAGATGGGGG
TTCGACAGGGGAACCG
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