mRNA_H-paniculata_contig7541.15522.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7541.15522.1
Unique NamemRNA_H-paniculata_contig7541.15522.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7541.15522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7541contigH-paniculata_contig7541:3993..4696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size704
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7541.15522.1prot_H-paniculata_contig7541.15522.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7541 4148..4654 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.5027988-UTR-H-paniculata_contig7541:3992..41471622930926.5027988-UTR-H-paniculata_contig7541:3992..4147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7541 3993..4147 +
1691481513.7038336-UTR-H-paniculata_contig7541:3992..41471691481513.7038336-UTR-H-paniculata_contig7541:3992..4147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7541 3993..4147 +
1622930926.5356445-UTR-H-paniculata_contig7541:4654..46961622930926.5356445-UTR-H-paniculata_contig7541:4654..4696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7541 4655..4696 +
1691481513.727076-UTR-H-paniculata_contig7541:4654..46961691481513.727076-UTR-H-paniculata_contig7541:4654..4696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7541 4655..4696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.5197363-CDS-H-paniculata_contig7541:4147..46541622930926.5197363-CDS-H-paniculata_contig7541:4147..4654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7541 4148..4654 +
1691481513.7158399-CDS-H-paniculata_contig7541:4147..46541691481513.7158399-CDS-H-paniculata_contig7541:4147..4654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7541 4148..4654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7541.15522.1

>prot_H-paniculata_contig7541.15522.1 ID=prot_H-paniculata_contig7541.15522.1|Name=mRNA_H-paniculata_contig7541.15522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MYLPVLLLFCSFVATSTDVQCNSYRQFESLCWLALLRTTLQLIGSVHCRL
SAPIHTGYLQIQTLDQSTPCSPGLWLIAKVLGAHYSCLQVLLYAIKGQPH
VQAHACTRNHVTIIDKNRTRRRLVCLFLCATFGLLPLSCSPLRFLSLSCS
FSDQKMASFVFTSADQWM*
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mRNA from alignment at H-paniculata_contig7541:3993..4696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7541.15522.1 ID=mRNA_H-paniculata_contig7541.15522.1|Name=mRNA_H-paniculata_contig7541.15522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=704bp|location=Sequence derived from alignment at H-paniculata_contig7541:3993..4696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGATTGCACTATAGCGGCTAATGGCAAGAACGCTCCGGTCTCTGCGTAC
CATTAAGTGTAAAGAATACTCCACATACGCATATGCAGTTGGTTACCGCC
CGCTAAGGCATCCTGCTGCAAATCTCTCTACGTGCTAGTATGATGTTACA
ATTTAATGTATCTCCCCGTTTTATTGCTATTTTGCTCATTCGTAGCAACC
AGCACCGACGTACAGTGTAATAGTTACAGACAGTTTGAGTCTCTCTGTTG
GTTGGCATTGCTGCGCACAACTCTGCAACTAATCGGATCAGTCCACTGCC
GTCTCTCAGCGCCGATTCACACAGGTTACCTACAAATACAAACTCTCGAT
CAAAGCACCCCGTGTTCTCCTGGACTGTGGCTGATCGCCAAGGTGTTGGG
CGCCCACTATTCGTGTCTACAGGTCCTGCTGTACGCGATCAAAGGTCAGC
CACACGTCCAGGCACACGCTTGTACACGAAATCACGTCACAATCATAGAC
AAGAACCGAACCAGGCGTCGATTGGTTTGCCTATTTCTCTGCGCCACCTT
TGGTCTTCTTCCACTCAGCTGTTCTCCTTTGAGGTTTCTCTCCTTGTCAT
GCAGCTTTTCGGATCAGAAAATGGCATCGTTCGTTTTCACATCTGCAGAC
CAATGGATGTGATAGTTCTCTTTTTCCATTTCAAAGTTCATGAACTCTTG
TAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig7541:3993..4696+

>mRNA_H-paniculata_contig7541.15522.1 ID=mRNA_H-paniculata_contig7541.15522.1|Name=mRNA_H-paniculata_contig7541.15522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig7541:3993..4696+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCTCCCCGTTTTATTGCTATTTTGCTCATTCGTAGCAACCAGCAC
CGACGTACAGTGTAATAGTTACAGACAGTTTGAGTCTCTCTGTTGGTTGG
CATTGCTGCGCACAACTCTGCAACTAATCGGATCAGTCCACTGCCGTCTC
TCAGCGCCGATTCACACAGGTTACCTACAAATACAAACTCTCGATCAAAG
CACCCCGTGTTCTCCTGGACTGTGGCTGATCGCCAAGGTGTTGGGCGCCC
ACTATTCGTGTCTACAGGTCCTGCTGTACGCGATCAAAGGTCAGCCACAC
GTCCAGGCACACGCTTGTACACGAAATCACGTCACAATCATAGACAAGAA
CCGAACCAGGCGTCGATTGGTTTGCCTATTTCTCTGCGCCACCTTTGGTC
TTCTTCCACTCAGCTGTTCTCCTTTGAGGTTTCTCTCCTTGTCATGCAGC
TTTTCGGATCAGAAAATGGCATCGTTCGTTTTCACATCTGCAGACCAATG
GATGTGAATGTATCTCCCCGTTTTATTGCTATTTTGCTCATTCGTAGCAA
CCAGCACCGACGTACAGTGTAATAGTTACAGACAGTTTGAGTCTCTCTGT
TGGTTGGCATTGCTGCGCACAACTCTGCAACTAATCGGATCAGTCCACTG
CCGTCTCTCAGCGCCGATTCACACAGGTTACCTACAAATACAAACTCTCG
ATCAAAGCACCCCGTGTTCTCCTGGACTGTGGCTGATCGCCAAGGTGTTG
GGCGCCCACTATTCGTGTCTACAGGTCCTGCTGTACGCGATCAAAGGTCA
GCCACACGTCCAGGCACACGCTTGTACACGAAATCACGTCACAATCATAG
ACAAGAACCGAACCAGGCGTCGATTGGTTTGCCTATTTCTCTGCGCCACC
TTTGGTCTTCTTCCACTCAGCTGTTCTCCTTTGAGGTTTCTCTCCTTGTC
ATGCAGCTTTTCGGATCAGAAAATGGCATCGTTCGTTTTCACATCTGCAG
ACCAATGGATGTGA
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