mRNA_H-paniculata_contig754.15521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig754.15521.1
Unique NamemRNA_H-paniculata_contig754.15521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: D7FI21_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI21_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 2.010e-58
Identity = 87/91 (95.60%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            +PPDGIRFLPQEEDTIAEIHAEIKGP GTPYDGGSFHIKLVL NDFPHSPPRGFFLTKIYHPNVA NGDICVNTLKRDWTAEVTLTHVLQV
Sbjct:   34 NPPDGIRFLPQEEDTIAEIHAEIKGPVGTPYDGGSFHIKLVLSNDFPHSPPRGFFLTKIYHPNVAPNGDICVNTLKRDWTAEVTLTHVLQV 124
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: F0YJE8_AURAN (UBC core domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJE8_AURAN)

HSP 1 Score: 152 bits (384), Expect = 1.020e-45
Identity = 63/91 (69.23%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            SPP+G++++  + D + EIHAE+ GP GTPY+GG+F +KLVLG+DFP +PPRGFFLTKI+HPN+AANGDICVNTLKRDW+++VTL+HVLQV
Sbjct:   12 SPPEGVKYVETDADQLTEIHAEMSGPTGTPYEGGTFRLKLVLGSDFPSAPPRGFFLTKIFHPNIAANGDICVNTLKRDWSSDVTLSHVLQV 102
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A7S2W6M0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6M0_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.910e-43
Identity = 65/91 (71.43%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:    1 SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            +PP GIR++P E+D I+EIHA I+GP  TPY  G+FHIKLVLG+D+P +PPRGFFLTKIYHPNV+A G+ICVNTLKRDW+A+V+L+HVLQV
Sbjct:   33 NPPAGIRYVPPEDDKISEIHATIQGPEETPYASGTFHIKLVLGHDYPQAPPRGFFLTKIYHPNVSAKGEICVNTLKRDWSADVSLSHVLQV 123
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A7S2GD37_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GD37_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.130e-40
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            SPPDGIR++  E++ I+EIH ++ GP GTPY GG F +KLVL  DFP SPPRGFF TKIYHPNV+  G+ICVNTLKRDWTA+V++ H+LQV
Sbjct:   36 SPPDGIRYVAMEDEKISEIHVKMAGPDGTPYQGGIFRVKLVLSYDFPQSPPRGFFQTKIYHPNVSTKGEICVNTLKRDWTADVSIVHILQV 126
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A7S2WL03_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL03_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.370e-40
Identity = 60/91 (65.93%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            SPP+G+RFLP + DT+ E+H E+ GP  TPY GG+F +KLVLG D+P +PPRGFFLTKI+HPNV+ NGDICVNTLK+DW+  VTL+H+L V
Sbjct:   44 SPPEGVRFLPGDMDTLTEVHVELDGPEETPYFGGTFRMKLVLGQDYPQAPPRGFFLTKIFHPNVSNNGDICVNTLKKDWSQTVTLSHILAV 134
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A812S451_SYMMI (UBE2S protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S451_SYMMI)

HSP 1 Score: 136 bits (343), Expect = 4.800e-40
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    4 PPDGIRFLPQEE-DTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQ 270
            PPDG+ ++  E+ +T++EIHA I GP GTP+ GG F +KLVL  D+P SPPRG+FLT+IYHPN+A+NGDICVNTLKRDWT EVT  H+LQ
Sbjct:   11 PPDGVEYVDNEDGNTLSEIHAIISGPEGTPFYGGKFRMKLVLSEDYPASPPRGYFLTRIYHPNIASNGDICVNTLKRDWTPEVTFKHILQ 100
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A8J2SRP1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRP1_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.220e-40
Identity = 56/91 (61.54%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            +PP+G++++  + D + E+HA++ GP GTPY G  F +KLV+G++FP +PPRGFFLTKI+HPNVA NGDICVNTLKRDW  E TL+H+LQV
Sbjct:   23 TPPEGVKYVETDADALTEVHADLTGPEGTPYSGAVFRLKLVIGSEFPSAPPRGFFLTKIFHPNVATNGDICVNTLKRDWKPETTLSHILQV 113
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A8K1CMN2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMN2_PYTOL)

HSP 1 Score: 140 bits (353), Expect = 1.390e-39
Identity = 57/91 (62.64%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            +PP+GIR++PQE++ + EIH EI GP  TPYDGG F +KL L + FPH+PP+G FLTKI+HPN+A NG+ICVNTLK+DWT+ + + HVLQV
Sbjct:   26 NPPNGIRYVPQEDEVLTEIHVEIAGPENTPYDGGYFQVKLTLSDGFPHAPPKGVFLTKIFHPNIATNGEICVNTLKKDWTSTLGIAHVLQV 116
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A6G0WSU5_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSU5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.710e-39
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    4 PPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            PP GIR+LPQEE+++AEIH E+ GP  TPY GG F +KLVL + FP  PP+G FLTKI+HPNVA NGDICVNTLKRDW A++ L+HVLQV
Sbjct:   26 PPTGIRYLPQEEESLAEIHVELVGPEDTPYAGGFFEMKLVLTDGFPTVPPKGLFLTKIFHPNVATNGDICVNTLKRDWKADLDLSHVLQV 115
[Close]
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Match: A0A836CAV4_9STRA (Ubiquitin-conjugating enzyme E2S n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV4_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.910e-39
Identity = 59/89 (66.29%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:    7 PDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSPPRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV 273
            P+G  F+P E D IAEI  +I+GP GTPY+GGSF +KLVL +D+P SPPRGFFLT+IYHPNV   GDICVNTLK+DWT  VT+ H+ QV
Sbjct:   29 PEGCTFVPSETDNIAEIMCDIEGPVGTPYEGGSFRVKLVLSSDYPSSPPRGFFLTRIYHPNVGPTGDICVNTLKKDWTQAVTMAHIFQV 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig754.15521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI21_ECTSI2.010e-5895.60UBC core domain-containing protein n=2 Tax=Ectocar... [more]
F0YJE8_AURAN1.020e-4569.23UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A7S2W6M0_9STRA2.910e-4371.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GD37_9STRA1.130e-4067.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WL03_9STRA1.370e-4065.93Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812S451_SYMMI4.800e-4065.56UBE2S protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A8J2SRP1_9STRA7.220e-4061.54Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CMN2_PYTOL1.390e-3962.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WSU5_9STRA1.710e-3968.89UBC core domain-containing protein n=1 Tax=Aphanom... [more]
A0A836CAV4_9STRA1.910e-3966.29Ubiquitin-conjugating enzyme E2S n=1 Tax=Tribonema... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig754contigH-paniculata_contig754:29369..30484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue1.8e-46
Seed eggNOG ortholog2880.D7FI21
Preferred nameUBE2S
KEGG koko:K10583,ko:K13764,ko:K14292
KEGG Pathwayko03013,ko04120,ko04744,map03013,map04120,map04744
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010458,GO:0010498,GO:0010604,GO:0010992,GO:0010994,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0031145,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0034622,GO:0035519,GO:0036211,GO:0042592,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044314,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051258,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070534,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0080090,GO:0085020,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1903047,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0423@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.4292881-CDS-H-paniculata_contig754:29368..294471622930926.4292881-CDS-H-paniculata_contig754:29368..29447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig754 29369..29447 +
1691481513.6803262-CDS-H-paniculata_contig754:29368..294471691481513.6803262-CDS-H-paniculata_contig754:29368..29447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig754 29369..29447 +
1622930926.4494634-CDS-H-paniculata_contig754:30290..304841622930926.4494634-CDS-H-paniculata_contig754:30290..30484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig754 30291..30484 +
1691481513.691929-CDS-H-paniculata_contig754:30290..304841691481513.691929-CDS-H-paniculata_contig754:30290..30484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig754 30291..30484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig754.15521.1prot_H-paniculata_contig754.15521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig754 29369..30484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig754.15521.1

>prot_H-paniculata_contig754.15521.1 ID=prot_H-paniculata_contig754.15521.1|Name=mRNA_H-paniculata_contig754.15521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
SPPDGIRFLPQEEDTIAEIHAEIKGPAGTPYDGGSFHIKLVLGNDFPHSP
PRGFFLTKIYHPNVAANGDICVNTLKRDWTAEVTLTHVLQV
back to top

mRNA from alignment at H-paniculata_contig754:29369..30484+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig754.15521.1 ID=mRNA_H-paniculata_contig754.15521.1|Name=mRNA_H-paniculata_contig754.15521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig754:29369..30484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCCCCAGATGGCATCCGATTCTTACCACAGGAGGAGGACACAATCGC
GGAAATACACGCGGAGATCAAGGGACCTGGTGAGTGTGTGCGGTTTGCTG
TGAGTTGAGCGCGGTACAGACGGAAATTAAGTCGGGGGAACGTCTGTATT
CCAAAACCCATAGTGGGCTGCCAAAATGAAGGCGATTCGTGTCGATGAGT
GCCGCCCCAAGAGCTTCAATACAGGACCATATGCAGCACCCCCTCCCGCG
CCCCCCAGCTCGGCGCTCGTCCGCATCCGTCGACCTTTTAGCTTGGTTGA
GGATGTTGAAGGTGTGTGATCCACGCCTACTCTGTTGGCGTAGGATTGCG
TATACTTGGTGTACCACCAACTCATTTTGAAATGGTCGGCCCATTTTTGC
GTAGTGATACCTTCATCAATTTTGTTTTCTCTCTGTGCGAGCGGCGCGTG
GATGAGTCCCCGCCCCCCTCCTACGCACCCCTGGCTCTCATACTTAATGA
AAGGATGCAGGAGAATTGGATTGCATGTACTGGCCTGTCGATGTTGTTGG
CCCTTGTCGCTGCAGTTGCTGTTTGACAGACGATGGATCGCGGACCGCTC
CCTCTCTCCATTTCTCCATCTCTTATCTCTCCCCCTGGCAAATAATTAGC
CGTCCTCGTACTGCAATTAACTGGCAGCTGGTAAAACTCACGGTGCCGTA
CATGCAACAGTAGTCAACACCGTGCTGCATGCCTCACACTGTACTTTGTG
GATTGTCGTGAATTAGAAACTAGCTAATCGAAATGGCCACCTACTGCTCT
TCCTTACATGTTATACACGAAAACCTCGCCACCGATTGACTTCCTTTTGA
TCCTCTCGCATCCTCCCCCTCATACCCCCGGAAAAACGGAATCCTCTTCC
CTTTTGCATCCTGGTGTTGAAGCGGGGACACCTTACGATGGAGGCTCTTT
CCATATCAAGCTGGTGTTGGGTAATGACTTCCCTCACTCCCCGCCAAGGG
GTTTCTTCCTGACCAAGATCTACCATCCTAACGTGGCAGCTAACGGTGAT
ATCTGCGTGAACACGCTTAAGCGAGACTGGACGGCAGAGGTTACGCTCAC
GCACGTCCTGCAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig754:29369..30484+

>mRNA_H-paniculata_contig754.15521.1 ID=mRNA_H-paniculata_contig754.15521.1|Name=mRNA_H-paniculata_contig754.15521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig754:29369..30484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCCCCCAGATGGCATCCGATTCTTACCACAGGAGGAGGACACAATCGC
GGAAATACACGCGGAGATCAAGGGACCTGAGCCCCCCAGATGGCATCCGA
TTCTTACCACAGGAGGAGGACACAATCGCGGAAATACACGCGGAGATCAA
GGGACCTGCGGGGACACCTTACGATGGAGGCTCTTTCCATATCAAGCTGG
TGTTGGGTAATGACTTCCCTCACTCCCCGCCAAGGGGTTTCTTCCTGACC
AAGATCTACCATCCTAACGTGGCAGCTAACGGTGATATCTGCGTGAACAC
GCTTAAGCGAGACTGGACGGCAGAGGTTACGCTCACGCACGTCCTGCAGG
TGCGGGGACACCTTACGATGGAGGCTCTTTCCATATCAAGCTGGTGTTGG
GTAATGACTTCCCTCACTCCCCGCCAAGGGGTTTCTTCCTGACCAAGATC
TACCATCCTAACGTGGCAGCTAACGGTGATATCTGCGTGAACACGCTTAA
GCGAGACTGGACGGCAGAGGTTACGCTCACGCACGTCCTGCAGGTG
back to top