mRNA_H-paniculata_contig7533.15518.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7533.15518.1
Unique NamemRNA_H-paniculata_contig7533.15518.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7533.15518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7533contigH-paniculata_contig7533:3650..8968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_003420.1
Exons2
Model size1982
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7533.15518.1prot_H-paniculata_contig7533.15518.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7533 4032..7527 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.7876127-UTR-H-paniculata_contig7533:3649..40311622930925.7876127-UTR-H-paniculata_contig7533:3649..4031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7533 3650..4031 +
1691481513.3751264-UTR-H-paniculata_contig7533:3649..40311691481513.3751264-UTR-H-paniculata_contig7533:3649..4031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7533 3650..4031 +
1622930925.855426-UTR-H-paniculata_contig7533:7527..89681622930925.855426-UTR-H-paniculata_contig7533:7527..8968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7533 7528..8968 +
1691481513.4155195-UTR-H-paniculata_contig7533:7527..89681691481513.4155195-UTR-H-paniculata_contig7533:7527..8968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7533 7528..8968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930925.8145032-CDS-H-paniculata_contig7533:4031..41451622930925.8145032-CDS-H-paniculata_contig7533:4031..4145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7533 4032..4145 +
1691481513.3914974-CDS-H-paniculata_contig7533:4031..41451691481513.3914974-CDS-H-paniculata_contig7533:4031..4145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7533 4032..4145 +
1622930925.834412-CDS-H-paniculata_contig7533:7482..75271622930925.834412-CDS-H-paniculata_contig7533:7482..7527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7533 7483..7527 +
1691481513.4063628-CDS-H-paniculata_contig7533:7482..75271691481513.4063628-CDS-H-paniculata_contig7533:7482..7527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7533 7483..7527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7533.15518.1

>prot_H-paniculata_contig7533.15518.1 ID=prot_H-paniculata_contig7533.15518.1|Name=mRNA_H-paniculata_contig7533.15518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MVDFGSLVGSAVAVGLLAALLFRWLRNSWKGDEDNDIEVDGNMRTRIRHG
GL*
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mRNA from alignment at H-paniculata_contig7533:3650..8968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7533.15518.1 ID=mRNA_H-paniculata_contig7533.15518.1|Name=mRNA_H-paniculata_contig7533.15518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5319bp|location=Sequence derived from alignment at H-paniculata_contig7533:3650..8968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTCAAGGTCGATTGGAGCCTTGGCTTGGGCAGTGTGCAGCTTGTTACAT
TGTACGCCCGTGATCGCGTAGCTCTCCCTTTGCGTGTTCGTGTTTTCCTT
TTACATATCGTGGTTGTTCCGTTCAGAGGGCTACTGCTTCCTAGCAAAAG
AGAACGACGGTCAAGACAACTGGAACAAGCTCTGGTGATTCATGAAAGTA
TCATAGAACAGTCATTACAGGACAGTCAAGACAGCATAAAAACTCCGCTA
CATGCAGTCGGGGCAGGCCTACATGTGCCGCGGTCCGTTATCAACAAGAG
ACAGCACGATACAGTGACGGTCGGACGGTGGGGGACATTGCACGCTTCGG
CTACCAATAGGTAGCCAGTCGTTGGTGTGCCAATGGTCGACTTTGGATCT
TTGGTGGGAAGCGCAGTGGCAGTAGGACTGCTTGCAGCATTGTTGTTTCG
GTGGTTGCGCAACAGTTGGAAAGGCGACGAGGACAACGATATCGAGGTGG
GTGATATGCATCACCTTTGAGATCAGTAAATCCCTATCCTGTGACGGGTG
ACGGAGTACAACACCCCCCGGTGATTATATGTTAGCGGTTCGAATTTCAT
CTCCTAGGAGTGGTATTCGTGAGGGGTGTCGTCGTAAACTCCATACCCCT
CAATGATACCTTGCAATCTCTGTGCACGCGTTTTGGAAGATATCACCCCC
CCCTAGGCAGACACCAGGGGGGTAATAAGATGGGGGGGGGGGAGTGTCAG
CGTGCCAGCCGCTTTGGGGTGACATCAACTCCCCTACAATTGTAGGTAGA
CAACTCCTCCTCCGTTGATATGATATCACAGCTACAATAGAGTCCCAACA
GAGCACTTGTTCTGTCAACGAGATACAAAAAACGTGGTGTGGCGTTGTGA
AACACAAGACGGCCAGCCGCTTTGATTCCGGCCTTCCTTCCGGACGCAGA
TGAAGAGAGGTGGGGGGGGGGGGGGGGGGGGGGGTTACTTACGCAGATAA
GAAGATATAGAAGTGCTGGCCTAGGCAGTAGTAGGGGAGGGGTCACCTGC
TGTTTGGCTGTAAAGTTGTGTGGAGCTGTGAAAACATTAGAAGTTAATAT
CCATGTTTCAACGATTCCTCCGTAAATATTGAGTAAGAACAAACAAGAAA
GAAAAACAACCAACCAATACAAGAAAATGGCAAGACGAAACCGAGTCAGC
GGTAAGGCACAGCAACAAAAATGGTACTATATTTTACTGACGGCCCATTT
GTTGCCCGGGTAATCTTCATGTCTCTATATCGTCGTTATATAAAGTCATA
ACTGTCAGGAGACCAAACATAAATAACTGAATATTCCTGGTTATTGAGCA
ACTAACACAATTGCAGATGATGTTATTTTGTGGGATTGTGTTGACGAGTG
TGTACTTGTATAATTACACCATCCCCGGATAAATACGAATAATTGGCGAA
TTCGCCACGAAAATCAAAAGTATTCGCCTGAATTTCAGAATGAGCTCATG
TGTTCCATGCGCCTTCGACCATCCACGATTGCTAATAATACTCGACAATC
GAACGGACAGGGATGAGTACTTTGTTCTGTGTGTCTGCTCATTCTAAAAC
TCTGGCGAATATATTTTTCGTGGAAAATACATCGATTATTATTTTTTGTC
CGGGAGGGAAATTGTACTAAAAAAGGTTGGCAATGAGCATTTGGACACAC
AGCACACCTGACAAAAAACAAGATATAACAGTCACCTAGAAAAGTATTTA
CCACAATCTCTTCATATCCCACAATTAACCTGCATGTCTTGATCTTTTCT
AGGCATTCGCAGATGGATAAATATAGTATTTCATGTACATCCATGATACT
TGCATCAATAAAATATCCGTCTATATGTATCTGTTATGTGGTTGCATATG
TGTCGCGTTGTGTACGTATGAACGCGCTTGACAAGAACAGCCCCTTCCTG
TTGAGACATAAAGTACGCACAATAAATCTATGTGCACATTAAAATTTGGG
GGAGCAAACTACATGCCCGAGGCTGAAGTAATTAACTCTAGTGACAAATA
GAAACAGAAACGAAGATTCATTCACTGTTTACGTTTTTCCAAACTGATAT
TGTACAGGTGATAACACATGATGAAGATCCAAAATGCGATACAAAATTTA
CTACCTCAAGAGTAAGAAATAGTATAGCAAAACCAAAGTCTGTTGGTGTG
TCTCACTCCTTACCAGCAAACAAAAGCCGTAAGTGTAGATTTACTAGCTA
GCGTCCAGGCCGGCGCTAGTGTGGAAAATTAATATCCGATTGGCCAGGAG
TACTACACACCAACAGGTGCTTGCTCCCCTCTCGCTTGCACCGTGCTCCC
GCTGTGGGTCTACTCCTCCTCCTCCTCCTCCTACTAACACTAATAAAACA
ATTAATACTACTACTACTACTACTACTACTACTACTACTACTACTACCTG
CAGATGAATAAACGAGTTGCGTTTAATATTTCATGTACATAAGACGGTCG
AGACTGATACAAAATCTCCACGCTATTAATACATGATGAGATGAACAATA
GTGCACTTCATGTAGGAGCAAGAATTCTGCTACCGACTACAGCAAGGCGA
CATCATCACACCCATCAATTTCTAAGGACAGCTTCATCGGGAGGACGGCG
TCTACATTGAGAATAAGAATTGGAATAGTTTCATAGAGTAAAGAGCAAGT
CAAAAGTACAAGCAGGTATGCACAACCGACTTCTATTGTACAAAAGACAA
CCGTAAAACAAAACGGAAGTATGCTGAGCATCTTCAAGCTGCTGGACTAC
TTGGTTATTATCCACATACTGAATCAAGTTCAGGGGCGGCGGGGAGCAGC
ATACAGCATACCTCTGGTGACAAATGACCGCGTTAGACTGCCGAAATATT
ATCGCCAGGGCGTCATATTTGTGGGGGGGAAGGGAGCAGCAAACTATACT
CCGTCTCGGGTTTATATTCCATCACATACGGTAGTCTTCGCCATTTAATA
TGAGAAGGTAGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTCGCCGTTG
TTTGCGGTCCGCCTTTCAGCTCTTCATAGTAGAATTCCTTCTAGCTTGGG
TTCCCCCTGAAAGAAAGCGGAATTATCGCTGTATCTCTTCCCTTATATAT
AATGCTTGCTCTGGGACACGGCTTGGCAGAGCAGAGCAGTGAGGCTGCTG
AAAAAATGCCTTGTCGTGTATGTATGGCATGCCATAATGGTAGCCACGGT
ATTCCCAGGTGGGGATGGCCGGATCATTTTTGCCCTGCGCTGTGTTGAAT
ATATGTATCTACCGACGGGACCTGTTGGGAGCATGGCTATACGAAGCCGA
AAGTACGGGGCCTCTCTCATCGGTGGATGCTGTTCGACCGCATGTTATCT
AAGCTGGGCACATTGAACAGGACTGCTTGCGCCGACAGCGTGATGCCTCA
CCGACGCATATTTTTGTCCTGTATTTTCCGATGCCAACGGTACCAAGTCT
ATACTAGCCCTCTCCTCGCCAATCCGTTGGATAATAGCCGCGACCAACCC
ATTTGGAATTTTTACTACAGGAAGAAGCTATCACATTATGTCATCAAACG
AGAATAGCACCCTATGTTTGATTTGGACAGAAGTGGACTCCCTCGCAGTC
GAAGGGTCAATAAGCTGGGGGGAAAGTGCTATTTATTCGAGTAAACGTGT
GTGTGGAATCCTATCCGGAAATATGCGCAACCTTGATACTATTTTTAGTG
CAAAATAAGCGAACAATAAAGCACAAAGCGCAGCGAGGGAGACAGGCCTA
AACCTGTACCTGTACGTACCTATACCTTAGCAGGTCGACGGAAACATGCG
GACAAGAATACGGCACGGAGGATTATGACCAGCTGAAGAAGAACGACAGA
ATTTTTCTTAGAAAGCAAGATGTTTTTAGGTCGTATTGCACAGAACGTGT
TCTGTGCCTCAGACCATGAGGGTCAGCGCCGACGCGATGGTCTACATGGT
GGATGGACCACTTTCATACCAAAGGTTACCGTTGTATTCCGCGTTGTGTT
TCGTAGGCTTTTTAGCTCATAAGAAGGGGCCAAAAGCGAGCTGTCCGTTC
CTGTGTTTGTTGATGGTATAGGATATAGTTTCTCCCTGCCGCACGTTGAG
AAGCTGCCGAAAAGCTGTAAATGTCTACCTTTTATGTTGGTGCTGGGCAC
GTGTTTGGATAGAAGAGTTGGCAACGAAAAACGGCTAAGCATGAGCCAGA
TAATCCACCGCTGCGATGTAGTAGGGAGATAATTAAGGCCTTATAGGTTT
GGCGTGCACGGTTGTTACTGCGATCGATGTCGCCGTTTGGTTGCTACTCT
GAACTATCTGTGTTTTAATGACTTGATGGCGTGGTTTCACTGATGTTGGT
GTAACAACACAGGAATCCGCGGGGTGCGGAGGGCGTAGCGCTGGTGACGT
AGTGCAGATTTTCGTCAGTACTCGTTGTGGGTTTTGTGGACACACATCTG
AGTGTGTTCCAAGAAAGAAATACATTTGGCACCGAGAACCCACGCGCTTG
TCAACGCAGGGAAAATTCTTGCTGCTGCACCGATTTTTTTCCTGTTTTTA
AGGAGACGTGATGATATATGCTTGCTAGTCGGGTTCGCGTGCTATCAAGG
TAAATATCAGTTTATCGAAAGGGTGTTGTCTGAGTGATGATGTCTCGTTT
TATATCTCAATTGTATACTGTATGAAATTTGATTTTGATGCTCAAAACAG
CTAGCAGCTCTTGTCTGATGAGATGATGTCTCCTTCCTCCGCGTAATAAA
TACTTGGTGCCTGTGGGTGTTCGGTTATTGTGATTCCACCTACAATGGTC
TAGCGTGCTGAGATTGACTAATCTAGTGTTTGGTCCGGAAGATGGGGTGC
GGCGGAATATTTTCGTGGTACAAAAAATATTGCGTTGGTCGCCCGATGAC
TGTACCACGGGGGGGGGGGTTATATTTTGAAGCTCTTGACCCCTCTTCCC
TTGAACCCGAGATAATAGCCGGTCCCACCTCGTTTAACTCTTCAGCATAG
GAGTATGCCTTCGTGGACACGCTGGACAAAGTGACTCGGACATAATATTG
CCGAGTCATCTTGCGGCATGTCACTAGATAGGGGGTGGGTCGTTTTTGGA
GCATGACTGCTTTTCAGAGTGTAGCTGCTTGTCCCAACTGTGTTGATCTC
ATTCCCTCAGGATTGTTCTAAACAGTGAGATTATCTTCTCTTCTGCTTTC
CCCCCTCCCCTCCTTATCCCGGATTTGTTTTCAAGCTTCACAAATGAATA
TTTTTTTAGGCCCACAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig7533:3650..8968+

>mRNA_H-paniculata_contig7533.15518.1 ID=mRNA_H-paniculata_contig7533.15518.1|Name=mRNA_H-paniculata_contig7533.15518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig7533:3650..8968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGACTTTGGATCTTTGGTGGGAAGCGCAGTGGCAGTAGGACTGCT
TGCAGCATTGTTGTTTCGGTGGTTGCGCAACAGTTGGAAAGGCGACGAGG
ACAACGATATCGAGATGGTCGACTTTGGATCTTTGGTGGGAAGCGCAGTG
GCAGTAGGACTGCTTGCAGCATTGTTGTTTCGGTGGTTGCGCAACAGTTG
GAAAGGCGACGAGGACAACGATATCGAGGTCGACGGAAACATGCGGACAA
GAATACGGCACGGAGGATTATGAGTCGACGGAAACATGCGGACAAGAATA
CGGCACGGAGGATTATGA
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