prot_H-paniculata_contig75312.15516.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig75312.15516.1
Unique Nameprot_H-paniculata_contig75312.15516.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length170
Homology
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A838N7N4_9ARCH (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Nitrosopumilus sp. TaxID=2024843 RepID=A0A838N7N4_9ARCH)

HSP 1 Score: 114 bits (284), Expect = 7.140e-27
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 0
Query:    5 STTDSCLYFSRNDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTP--VEVKVKISAPDRGSRDNSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            S TD CL F R++  +T  ++A+YVDD  I G+ + ++  K+  ++ F+MKD G LS  LG+     R    +TI Q  YI  +LKR+   +C+ V TP  VE K +    +   + +++ Y+  +GS +  S  TRPDI+YAV+QAA+ M+     D    KRIFRY
Sbjct:   69 SRTDPCL-FMRSEEDKTKTIIAIYVDDCFILGKGKIIETIKNMFNEEFKMKDNGELSGFLGVN--VIRTKEYLTIDQEFYIDNMLKRFNMSDCKTVNTPMAVESKGEEKIKEIERKFDTVTYQSAIGSLIYLSIATRPDISYAVNQAAQAMQSSTEYDWQKVKRIFRY 233          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 111 bits (277), Expect = 4.550e-26
Identity = 64/172 (37.21%), Postives = 96/172 (55.81%), Query Frame = 0
Query:    1 GLDHSTTDSCLYFSRNDGGETNLLVAVYVDDLV-IAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKISAPDRGSRD-NSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            G   S++D C++   +   E   ++AVYVDDL+ I    E +DE K  + +R++MKDLG LS +LGI    ++    I + Q  YI  +LK+YG D+   V TP ++ VK+   D  S   +   Y+ MVGS + A+  TRPDIA AV   ++   +P    ++  KRI RY
Sbjct:   29 GFKQSSSDPCVFVRLSQELE---IIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRY 197          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A0G4IXE9_PLABS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IXE9_PLABS)

HSP 1 Score: 113 bits (282), Expect = 4.820e-26
Identity = 67/180 (37.22%), Postives = 97/180 (53.89%), Query Frame = 0
Query:    1 GLDHSTTDSCLYFSRNDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKISAP----DRGSRD------NSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            G   + + SCLYF R   G   ++V VYVDD+ I G  E V E K  +S+RF+M D+G L  V+G +   +R  G++ +SQ  Y + +L  YG  E R V TP +  +K+S      ++  R+        I YR  VG  +     TRPDIAYAV++ +R ++DP        KR+FRY
Sbjct:  182 GFQRAKSASCLYFKRGPTGRL-VIVGVYVDDIPIVGHPELVQETKSALSKRFKMSDMGELQSVIGFD--VDRQGGSVFLSQERYTKTILDTYGMAESRPVSTPADANLKLSTSLCPQNQADRELAALEGQRINYRAAVGHLMWL-LHTRPDIAYAVNEVSRYVQDPGPAHFVALKRVFRY 357          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A3P3Y0G8_PLABS (Integrase catalytic domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y0G8_PLABS)

HSP 1 Score: 113 bits (282), Expect = 7.040e-26
Identity = 67/180 (37.22%), Postives = 97/180 (53.89%), Query Frame = 0
Query:    1 GLDHSTTDSCLYFSRNDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKISAP----DRGSRD------NSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            G   + + SCLYF R   G   ++V VYVDD+ I G  E V E K  +S+RF+M D+G L  V+G +   +R  G++ +SQ  Y + +L  YG  E R V TP +  +K+S      ++  R+        I YR  VG  +     TRPDIAYAV++ +R ++DP        KR+FRY
Sbjct:  806 GFQRAKSASCLYFKRGPTGRL-VIVGVYVDDIPIVGHPELVQETKSALSKRFKMSDMGELQSVIGFD--VDRQGGSVFLSQERYTKTILDTYGMAESRPVSTPADANLKLSTSLCPQNQADRELAALEGQRINYRAAVGHLMWL-LHTRPDIAYAVNEVSRYVQDPGPAHFVALKRVFRY 981          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A0J7KBT5_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KBT5_LASNI)

HSP 1 Score: 111 bits (278), Expect = 2.400e-25
Identity = 60/166 (36.14%), Postives = 96/166 (57.83%), Query Frame = 0
Query:    8 DSCLYFSRNDGGETNLLVAVYVDDLVIAGRR-EKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKISAPDRGSRDNS--IEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            D C+Y  R   G+  +L+AVYVDD+++  R   K++E K N++Q F ++DLG ++  LGIE    R N  I + Q  YIR +L R+G  E + V TP++  VK+  PD  S   +  I YR ++G+ +  +  TRPDIA+A+   ++  +   +   +  KR+ RY
Sbjct:  810 DPCIY--RIGHGDNTILIAVYVDDIILVSRNLNKIEELKKNLAQEFDVRDLGEINYCLGIE--FSRNNDTIALHQSGYIRDILDRFGMTESKPVSTPMDPNVKLVKPDENSDIGATKIPYRELIGALMYLAVSTRPDIAFAISSLSQFNDCYDQNHWNAAKRVLRY 971          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 106 bits (265), Expect = 4.510e-25
Identity = 61/174 (35.06%), Postives = 98/174 (56.32%), Query Frame = 0
Query:    1 GLDHSTTDSCLYFSRNDGGETNLLVAVYVDDLVIAGRREK-VDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKISAPDRGSRDNSIE---YRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            G   S  +SCLY  R+ G E  L+VAVYVDDLVI+G  +  V EFK +++ ++ + D G L+++LGI+   ++ N    +SQ S+I+  L ++G D      TP++  V ++ P  G +    +   YR MVG+    +  TRP++A+ VH+  R   +P  +     +R FRY
Sbjct:   97 GFKRSGHESCLYIHRDGGNE--LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLT-PTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRY 267          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A3P3XYK5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3XYK5_PLABS)

HSP 1 Score: 110 bits (274), Expect = 8.500e-25
Identity = 66/180 (36.67%), Postives = 96/180 (53.33%), Query Frame = 0
Query:    1 GLDHSTTDSCLYFSRNDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKISAP----DRGSRD------NSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            G   + + SCLYF R   G   ++V VYVDD+ I G  E V E K  +S+RF+M D+G L  V+G +   +R   ++ +SQ  Y + +L  YG  E R V TP +  +K+S      ++  R+        I YR  VG  +     TRPDIAYAV++ +R ++DP        KR+FRY
Sbjct: 1077 GFQRAKSASCLYFKRGPTGRL-VIVGVYVDDIPIVGHPELVQETKSALSKRFKMSDMGELQSVIGFD--VDRQGRSVFLSQERYTKTILDTYGMAESRPVSTPADANLKLSTSLCPQNQADRELAALEGQRINYRAAVGHLMWL-LHTRPDIAYAVNEVSRYVQDPGPAHFVALKRVFRY 1252          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A0J7KCA0_LASNI (Retrotransposon unclassified n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KCA0_LASNI)

HSP 1 Score: 107 bits (268), Expect = 3.400e-24
Identity = 65/173 (37.57%), Postives = 96/173 (55.49%), Query Frame = 0
Query:    1 GLDHSTTDSCLYFSRNDGGETNLLVAVYVDDLVIAGRREK-VDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVE--VKVKISAPDRGSRDNSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            G + +  D CLY  R+  GE  +L+AVYVDD++IA R +K +D   + +SQ+F MK+LG ++R LGIE    R    IT++Q  YI  +LKR+G  +C  V TP +  VK+K         D ++ YR +VGS    ++ TRPDIA++     +             KR+ RY
Sbjct:  177 GANATNADPCLY--RSGQGENVVLIAVYVDDILIASRNKKEIDRISYFLSQQFTMKNLGEVNRCLGIE--FNREGEKITLTQKGYICELLKRFGMADCNPVSTPFDSNVKLKKGIDKPTPHDQALPYRELVGSLTYLASSTRPDIAFSASYLGQFNNCFDETHWKAAKRVLRY 345          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A0A9XEM5_LYGHE (Copia protein (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XEM5_LYGHE)

HSP 1 Score: 107 bits (268), Expect = 3.670e-24
Identity = 61/167 (36.53%), Postives = 100/167 (59.88%), Query Frame = 0
Query:    5 STTDSCLYFSRNDGGETNLLVAVYVDDLVI-AGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKISAPDRGSRDNSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            S  D C Y  R +GGE  +L+AVYVDDLVI +  REK+DE K ++S+ F M+D+G ++  LGIE   ++ +G + +SQ  YI  +LK +  ++ + + TP+E  +K+  P  G   + + Y+ ++GS +  +T TRPDI Y+V   ++       +  +  KR+ RY
Sbjct:  198 SFADPCFYI-RGEGGE-KILIAVYVDDLVILSANREKLDELKEDLSRTFEMRDIGKINYCLGIEFSRDK-DGGVLMSQEKYINKLLKTFRMEKSKTMRTPMEANLKLEKPLEGVCPD-VPYQSLIGSLMYLATATRPDIMYSVSYLSQFNTCYRNDHWAAAKRVLRY 360          
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Match: A0A0A1WXQ3_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WXQ3_ZEUCU)

HSP 1 Score: 108 bits (269), Expect = 3.910e-24
Identity = 59/177 (33.33%), Postives = 98/177 (55.37%), Query Frame = 0
Query:    1 GLDHSTTDSCLYFSRNDGGETNLLVAVYVDD-LVIAGRREKVDEFKHNISQRFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEVKVKIS------APDRGSRDNSIEYRGMVGSPVCASTGTRPDIAYAVHQAARRMEDPCREDISTCKRIFRY 170
            GL+ S  D C+Y+  +    + + VA+YVDD LV +  +E     K+ +S +F+MKD+GS+S VLG+  + +     I + Q  YI  VLKR+G ++C  V TP+++  K++        +       I Y   +GS + A+  TRPDI++AV+  +R  ++P +      KR+ RY
Sbjct:  940 GLNRSEVDQCIYYCVSK--HSMVYVAIYVDDVLVFSNDKEATQRIKNVLSSKFKMKDMGSVSSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMNDCNAVATPLDLSQKLTLEICPQTEEAKKEMEKIPYMEAIGSLLYAAQNTRPDISFAVNLLSRFSQNPGKAHWLAVKRVMRY 1114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75312.15516.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A838N7N4_9ARCH7.140e-2738.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7JP25_9TELE4.550e-2637.21POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A0G4IXE9_PLABS4.820e-2637.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A3P3Y0G8_PLABS7.040e-2637.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A0J7KBT5_LASNI2.400e-2536.14Retrovirus-related gag-pol polyprotein n=1 Tax=Las... [more]
A0A7S3Y6S2_HETAK4.510e-2535.06Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A3P3XYK5_PLABS8.500e-2536.67Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0J7KCA0_LASNI3.400e-2437.57Retrotransposon unclassified n=1 Tax=Lasius niger ... [more]
A0A0A9XEM5_LYGHE3.670e-2436.53Copia protein (Fragment) n=2 Tax=Lygus hesperus Ta... [more]
A0A0A1WXQ3_ZEUCU3.910e-2433.33Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..104
e-value: 1.6E-18
score: 67.3
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 23..170
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 23..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75312contigH-paniculata_contig75312:3..590 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75312.15516.1mRNA_H-paniculata_contig75312.15516.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig75312 3..590 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig75312.15516.1 ID=prot_H-paniculata_contig75312.15516.1|Name=mRNA_H-paniculata_contig75312.15516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
GLDHSTTDSCLYFSRNDGGETNLLVAVYVDDLVIAGRREKVDEFKHNISQ
RFRMKDLGSLSRVLGIEGRCERPNGAITISQGSYIRGVLKRYGFDECRGV
PTPVEVKVKISAPDRGSRDNSIEYRGMVGSPVCASTGTRPDIAYAVHQAA
RRMEDPCREDISTCKRIFRY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like