mRNA_H-paniculata_contig753.15512.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig753.15512.1 vs. uniprot
Match: D7FPV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV9_ECTSI) HSP 1 Score: 480 bits (1236), Expect = 8.040e-161 Identity = 277/462 (59.96%), Postives = 321/462 (69.48%), Query Frame = 1
Query: 40 RGERLRRREEERAVKRAAKRRKLGKKPLLTKKRFTGPEGRVTKHVNKHRLELARLERLVANQEKLLHDYRPPKVVEPLDPELKRKRRRRDFYDLDTSHWRLTGAARPADSLPGAGGTELIDERDPWEAGEDLFEKLGGGD-----------------------------DGEGGKNGS-----FYDGPEACREYLRLNHQLAQALHHDGNGKESQMQEALSRYERCLTLDPSDHVKARRGLVRLLMDAGEADRARDLIERFPDDRGCEMAWSLAAIEFVAWSILEEEGSGEGVANKALSAAYEANPFVAWYIGNREVFDQVVEHADEITTYKVGSVEECFWYMVREGGLWESLGGVSEWISEYLLGNDILPPDPK-------ASLASQSEEIHNTS-------------NAEPGGGG------------------DDASEGMFANMYETAIGMAAEVVEEKL 1209
RGERLR+RE ERA KRA KRRKLGKKPL T R G E + KH NK RLELARLERLV+ QE+LL DYRPP V PLDPELKRKRRRRDFYDLDTSHW+LTGAARPADSLPGAGGTEL++ER+ WEAGEDLFEKL G +G G + G FY+GPEACREYL LNHQLAQ LH DG GKESQ +EAL RY+R L LDP DHV ARRGLVRLL+D G+AD+AR +I+RFPDDRGCEMAWSLAAIEFVAWS+L+E+GSGE VA KAL A ANPFVAW I +REVFD+VVEHADEI + GSV E FWYMVREGGLWESL G SEW++++LL N++LPP+P A S+ + NT+ +A+ G G D+++ GMFANM+ETA+GMAAE+ E++L
Sbjct: 3 RGERLRKREAERAEKRAKKRRKLGKKPL-TVDRSGGYESQPKKHANKRRLELARLERLVSKQEELLRDYRPPVHVAPLDPELKRKRRRRDFYDLDTSHWKLTGAARPADSLPGAGGTELVNEREDWEAGEDLFEKLAGASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGRQKGETSGGGFYEGPEACREYLDLNHQLAQRLH-DG-GKESQTEEALKRYQRSLELDPVDHVNARRGLVRLLLDGGDADKARAVIDRFPDDRGCEMAWSLAAIEFVAWSVLQEDGSGEEVAGKALREACGANPFVAWNIAHREVFDEVVEHADEIESPPAGSVMEAFWYMVREGGLWESLEGASEWVADFLLQNEMLPPNPHQGDDGVVAGEDSKDDSDGNTNGGGVREEKRVRQASADEAGDGEEEEGSTKMVLSEGDVDNDESNAGMFANMFETAVGMAAELAEQQL 461
BLAST of mRNA_H-paniculata_contig753.15512.1 vs. uniprot
Match: A0A835Z3Z8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z8_9STRA) HSP 1 Score: 239 bits (611), Expect = 4.350e-70 Identity = 145/309 (46.93%), Postives = 180/309 (58.25%), Query Frame = 1
Query: 139 FTGPEGRVTKHVNKHRLELARLERLVANQEKLLHDYRPPKVVEPLDPELKRKRRRRDFYDLDTSHWRLTGAARPADSLPGAGGTELIDERDPW-EAGEDLFEKLGGGDDGEGGKNGSFYDGPEACREYLRLNHQLAQALHHDGNGKESQMQEALSRYERCLTLDPSDHVKARRGLVRLLMDAGEADRARDLIERFPD-DRGCEMAWSLAAIEFVAWSILEEEGSGEGVANKALSAAYEANPFVAWYIGNREVFDQVVEHADEITTYKVGSVEECFWYMVREGGLWESLGGVSEWISEYLLGNDILPPDP 1059
F G + K K +LE++RL+R A QE+LL +Y PPKV P PE +R+RRR+DFYDLDTS W+L GAARPA + G E E W E GEDLF G + ACR YL L QL A G K+ A+ +ERCL LDPSD V+ARRGLVR LMD ADRAR LIERF D D G ++WSL AIE+++W +L E+GS E VA AL AAY ANPFVAW + + F V+E+ D+I +VEE F Y E LW+ L G +EWI+ +L+ P P
Sbjct: 23 FAGHDKAPRKADLKRKLEVSRLKRAAAKQEELLRNYIPPKVTTPECPESRRRRRRQDFYDLDTSKWQLRGAARPAPII----GAEP--ENPHWQEQGEDLF-----------ALKGEAFSSHPACRTYLDLKCQLGGACLAAGKSKD-----AIQHFERCLVLDPSDAVRARRGLVRALMDRSLADRARALIERFRDTDTGAVLSWSLVAIEYISWRLLGEDGSDEAVAAAALEAAYAANPFVAWQLAFADEFADVLEYVDDIRDPAPSTVEEAFQYCSWEAALWQDLEGAAEWIAGWLIARAAPAPQP 309
BLAST of mRNA_H-paniculata_contig753.15512.1 vs. uniprot
Match: A0A7S4MTR9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MTR9_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.890e-22 Identity = 99/323 (30.65%), Postives = 150/323 (46.44%), Query Frame = 1
Query: 319 LDTSHWRLTGAARPADSLPGAGGTELIDERDPW-----EAGEDLFEKLGGGDD------GEGGKNGSFYDGPEA--CREYLRLNHQLAQALHHDGNGKESQMQEALSRYERCLTLDPSDH-----VKARRGLVRLLMDAGEADRARDLIERFPDDRGCEMAWSLAAIEFVAWSILEEEGSGEGVANKALSAAYEANPFVAWYIGNREVFDQVVEHADEITTYKVGSVEECFWYMVREG-GLWESLGGVSEWISEYLL--------GNDILPPDP------KASLASQSEEIHNTSNAEPGGGGDDASEG--MFANMYETAIGM 1182
L W+L GAARPA E+ D + +A ED EK + G G+ S +GP CR++L L L Q H K+ ++ A + C+ L+ +D AR L+R+ ++A + AR L ER P D + +S A IEFV+WS++EE+GS A + L A EAN F A+YI + F++VVE+ DEI + G++EE Y E G W G +EWI E +L GN + + ++ ++H T N++ G ++ M+A M+ TA+ M
Sbjct: 136 LGPETWKLRGAARPA--------WEVYDFDTRYVCPHMKAHEDAREKTKRVQNVLSLYRGRFGEERSDEEGPPQPYCRQFLSL---LMQLGHLSVEAKK--LKSAREAFLECIDLEGTDPNSVVVTMARARLMRMCVEANRPESARRLWERIPHDSTAWVRYSAALIEFVSWSVIEEDGSSRERAEEMLRKAIEANKFCAYYIAFNDTFEKVVEYGDEIEDAEAGTLEEAIEYCHSEQMGFWLGTEGAAEWIREVILRLLHEQNDGNSWVQSTRSYLESWEKDISQIENQLHETKNSDDVNGDENEEPDIVMYAGMFRTAMDM 445
BLAST of mRNA_H-paniculata_contig753.15512.1 vs. uniprot
Match: UPI0007835068 (tetratricopeptide repeat protein n=2 Tax=Thalassobacillus devorans TaxID=279813 RepID=UPI0007835068) HSP 1 Score: 58.2 bits (139), Expect = 4.900e-6 Identity = 41/142 (28.87%), Postives = 73/142 (51.41%), Query Frame = 1
Query: 571 KESQMQEALSRYERCLTLDPSDHVKARRGLVRLLMDAGEADRARDLIERFPDDRGCEMAWSLAAIEFVAWSILEEEGSGEGVANKALSAAYEANPFVAWYIGNREVFDQVVEHADEITTYKVGSVEECFWYMVREGGLWESL 996
++ ++++A+ YE L +P+D+ R L+ L ++ + +AR+L+E++P+D + ++ IE + EGS + L A+EAN +V +I R D E D+ Y GS+EE Y R +WES+
Sbjct: 57 EKGEVEKAIEGYEYLLHYNPNDNQGIRFKLMTLYLEQRQVKKARELLEKYPEDHTVDFYYAEVLIEIL-------EGSSYKDIKELLDRAFEANLYVMGFITGRT--DLPEEIPDQ---YTPGSLEEATVYYHRHKHIWESV 186
BLAST of mRNA_H-paniculata_contig753.15512.1 vs. uniprot
Match: UPI00111C1A29 (SEC-C metal-binding domain-containing protein n=1 Tax=Thalassobacillus devorans TaxID=279813 RepID=UPI00111C1A29) HSP 1 Score: 60.1 bits (144), Expect = 1.130e-5 Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 1
Query: 571 KESQMQEALSRYERCLTLDPSDHVKARRGLVRLLMDAGEADRARDLIERFPDDRGCEMAWSLAAIEFVAWSILEEEGSGEGVANKALSAAYEANPFVAWYIGNREVFDQVVEHADEITTYKVGSVEECFWYMVREGGLWESLG 999
++ ++++A+ YE L +P+D+ R L+ L ++ + +AR+L+E++P+D + ++ IE + EGS + L A+EAN ++ +I R D E D+ Y GS+EE Y R +WES+G
Sbjct: 505 EKGEVEKAIEGYEYLLHYNPNDNQGIRFKLMTLYLEQRKVKKARELLEKYPEDHTVDFYYAEVLIEIL-------EGSSYEEIKELLDRAFEANLYIMGFITGRT--DLPEEIPDQ---YTPGSLEEATVYYHRHKHIWESVG 635
BLAST of mRNA_H-paniculata_contig753.15512.1 vs. uniprot
Match: A0A2V7Y878_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7Y878_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 2.440e-5 Identity = 52/188 (27.66%), Postives = 82/188 (43.62%), Query Frame = 1
Query: 511 REYLRLNHQLAQALHHDGNGKESQMQEALSRYERCLTLDPSDHVKARRGLVRLLMDAGEADRARDLIERFPDDRGCEMAWSLAAIEFVAWSILEEEGSGEGVANKALSAAYEANPFVAWYIGNREVFDQVVEHADEITTYKVGSVEECFWYMVREGGLWESLGGVSEWISEYLLGNDILPPDPKASLA 1074
R Y+R LAQ+L + + EA ++ L L+P D+ R LV +L+ AR+L++R+ +DR M + A + F A E S E A +AL A +AN V V + +++ G +EE +Y++ W G +W+ + LPP PK S A
Sbjct: 407 RPYMRNREGLAQSL-----VERKRYAEAAEHFQEMLRLNPEDNQGVRHSLVNVLIALDRDAEARELLDRYAEDRLALMEYPRALLRFRA-----EGDSPE--AKRALKRAVQANRLVPG------VLLRTRATTPGFSSFAPGRIEEATFYLILSLDTWAGTEGALDWLRK----RTTLPPRPKKSKA 572 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig753.15512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig753.15512.1 >prot_H-paniculata_contig753.15512.1 ID=prot_H-paniculata_contig753.15512.1|Name=mRNA_H-paniculata_contig753.15512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp MSKKQADGSRGERLRRREEERAVKRAAKRRKLGKKPLLTKKRFTGPEGRVback to top mRNA from alignment at H-paniculata_contig753:7599..19157+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig753.15512.1 ID=mRNA_H-paniculata_contig753.15512.1|Name=mRNA_H-paniculata_contig753.15512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11559bp|location=Sequence derived from alignment at H-paniculata_contig753:7599..19157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig753:7599..19157+ >mRNA_H-paniculata_contig753.15512.1 ID=mRNA_H-paniculata_contig753.15512.1|Name=mRNA_H-paniculata_contig753.15512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig753:7599..19157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |