mRNA_H-paniculata_contig7526.15509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7526.15509.1
Unique NamemRNA_H-paniculata_contig7526.15509.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7526.15509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7526contigH-paniculata_contig7526:3375..4222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size182
Cds size138
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7526.15509.1prot_H-paniculata_contig7526.15509.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7526 3419..4222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.975025-UTR-H-paniculata_contig7526:3374..34181622930923.975025-UTR-H-paniculata_contig7526:3374..3418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7526 3375..3418 +
1691481512.4836943-UTR-H-paniculata_contig7526:3374..34181691481512.4836943-UTR-H-paniculata_contig7526:3374..3418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7526 3375..3418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.9897406-CDS-H-paniculata_contig7526:3418..35051622930923.9897406-CDS-H-paniculata_contig7526:3418..3505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7526 3419..3505 +
1691481512.493812-CDS-H-paniculata_contig7526:3418..35051691481512.493812-CDS-H-paniculata_contig7526:3418..3505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7526 3419..3505 +
1622930924.0043912-CDS-H-paniculata_contig7526:4171..42221622930924.0043912-CDS-H-paniculata_contig7526:4171..4222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7526 4172..4222 +
1691481512.5039148-CDS-H-paniculata_contig7526:4171..42221691481512.5039148-CDS-H-paniculata_contig7526:4171..4222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7526 4172..4222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7526.15509.1

>prot_H-paniculata_contig7526.15509.1 ID=prot_H-paniculata_contig7526.15509.1|Name=mRNA_H-paniculata_contig7526.15509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
MRRQTFQLHSQFQALGRWQQHLRVADLRQRGFQKRHLEGLSGTRAG
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mRNA from alignment at H-paniculata_contig7526:3375..4222+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7526.15509.1 ID=mRNA_H-paniculata_contig7526.15509.1|Name=mRNA_H-paniculata_contig7526.15509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=848bp|location=Sequence derived from alignment at H-paniculata_contig7526:3375..4222+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTCTTGGCGGCTGAGTTGGGAACTGGGGTAATGCACAGAGCCCATGAGG
CGGCAAACGTTTCAGCTCCACAGCCAGTTTCAGGCTCTAGGTCGATGGCA
GCAGCATCTACGGGTCGCAGACCTCCGCCAGGCGAGTTGAGCTGAGTAGC
ACAAAACATGTGATTGGAGTTTCGGAGTTCTGTGTGTGATCTGTGACCCC
CAAGCATCGCCGTCTGCACTCATGCTGCTGCTGCTCGTATGATCGCAGGA
TGCCAAACTACCCTAACTGCTGCACATTGCGGTAGTACTGCCGTACAAGT
GCTGTTACCATTTCTGTAAGCACTGCTGAAACCATTGATGTAAACGTGGC
TGTATCATGCACATACGCAGTAGGCACTCGCACACTGAATGTGATGGTAC
ATCGTATCGCATTGGCATCTCAAGACTGCTGTACGAGTGAAACTGCTGTA
CGAGTGAAACTGCTGTACTCGTACCTGTTGCTCGGTTACCGCTGCTGTAT
CGTGCGGACTCGCATCTCATGCATATGATGGTACGATTTTTGTTGTTATT
CGCACGCGTCGGTTCTCGTGGTATCGCACGATACCTTCGTATACGTACGT
ACTGCTGTCTGCACAAGCAGGAGTGCGAAATACATGTCTTGACCGCACTC
TACGACTTTCTGCACAAGTGGATACATGTCTGTACATCTGCCCACGAAAC
ACCCGACGTACGGACTCGTATTCAAATTCATGGACTAGTATTCACGCCCG
ATCTCTTCCCCCTTGCTCCGGCTTTAACTCTCAATGCCGCACAACAGAGG
GGATTCCAGAAGAGGCACCTGGAAGGGCTTAGCGGCACTCGTGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig7526:3375..4222+

>mRNA_H-paniculata_contig7526.15509.1 ID=mRNA_H-paniculata_contig7526.15509.1|Name=mRNA_H-paniculata_contig7526.15509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig7526:3375..4222+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCGGCAAACGTTTCAGCTCCACAGCCAGTTTCAGGCTCTAGGTCG
ATGGCAGCAGCATCTACGGGTCGCAGACCTCCGCCAGATGAGGCGGCAAA
CGTTTCAGCTCCACAGCCAGTTTCAGGCTCTAGGTCGATGGCAGCAGCAT
CTACGGGTCGCAGACCTCCGCCAGAGGGGATTCCAGAAGAGGCACCTGGA
AGGGCTTAGCGGCACTCGTGCGGGGAGGGGATTCCAGAAGAGGCACCTGG
AAGGGCTTAGCGGCACTCGTGCGGGG
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