mRNA_H-paniculata_contig7523.15507.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7523.15507.1
Unique NamemRNA_H-paniculata_contig7523.15507.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7523.15507.1 vs. uniprot
Match: D7G4L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L8_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 6.410e-43
Identity = 123/316 (38.92%), Postives = 156/316 (49.37%), Query Frame = 1 
Query:    1 SLVRLGMFKSANDSKSRFIHKHMKAAAAAALTNSPLPTELGE-----------YGGTPA--TTSLSEPLAVMTTETGLEDYR--RWKEEIDWRWYLDHTANNNKRSTTGIDNHHN--HRISQKSRRRPRGRLCDGQIIPPVDGHXXXXXXXXXTSPVTHRGHAFTMGKGAEKPLSTHDTKPQTKTVVKLASMGEGGHSIVGGSTLVCVDGVISKSPFPRGDAGSYRGHCGGGVEVGFDNSRDLHSDGAMSSSKVEAVVRRLCDPKSFTGTAATGHLPITVDLEEGADVLLKDASIAVKDHVGTQEVSWRLRLAERL 897
            SL RLG+FKSAND+KSRFIHKH++AA A + T+S    E+GE           +GG P      ++ P+AVM TE  LEDYR  R  E I     L   + +      G+ +  +   + S +  R  RGR  D  ++     H            + H  H    G             P T  V+    + +GG     G  L+  DGV  KS FPRG                   +  L S  +   S+ + V+ RLC+PK FTGTAATGHLP+ VDLE G  VLLK ASIAVKDH+G QEVSWRLRLAERL
Sbjct:    9 SLARLGLFKSANDAKSRFIHKHIRAATALSHTSSS--PEVGEGMGMPEPLPRHWGGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAERIRDHRSLGSRSKSQGPGPEGVKSLTSVVPKASARGARLQRGRSEDSFVVGKKTNHCEHPSPRHPHQHLRHHPHPCQRGGHNSDQRQPKHRPPSTHAVI----LPKGG-----GLVLIGEDGV-RKSKFPRGC------ELSAAAMASVATTPPLESK-SSGESEDDDVLARLCNPKHFTGTAATGHLPVVVDLEGGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 305
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BLAST of mRNA_H-paniculata_contig7523.15507.1 vs. uniprot
Match: A0A6H5KLC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC7_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.010e-35
Identity = 118/320 (36.88%), Postives = 145/320 (45.31%), Query Frame = 1 
Query:    1 SLVRLGMFKSANDSKSRFIHKHMKAAAAAALTNSPLPTELGE-----------YGGTPA--TTSLSEPLAVMTTETGLEDYR-RWKEEIDWRWYLDHTANNNKRSTTGIDNHHNHRI-------SQKSRRRPRGRLCDGQIIPPVDGHXXXXXXXXXTSPVTHRGHAFTMGKGAEKPLSTHDTKPQTKTVVKLASMGEGGHSIVGGSTLVCVDGVISKSPFPRGDAGSYRGHCGGGVEVGFDNSRDLHSDGAMSSSKVEAVVRRLCDPKSFTGTAATGHLPITVDLEEGADVLLKDASIAVKDHVGTQEVSWRLRLAERL 897
            SL RLG+FKSAND+KSRFI+KH++AA  A  ++SP   E+GE             G P      ++ P+AVM TE  LEDYR R + EI      DH    +K    G        +       S +     RGR  DG ++                  + H       G+            P T  V+    + +GG     G  L+  DGV  KS FPRG   S                                V+ RLC+PK FTGTAATG LP+ VDLE G  VLLK ASIAVKDH+G QEVSWRLRLAERL
Sbjct:   37 SLARLGLFKSANDAKSRFINKHIRAATLAHTSSSP---EVGEGMGRQEPLPRHCSGPPEFPRAKVAAPVAVMATEAALEDYRQRRRAEI----IRDHRGPGSKSEPQGPGPEGLKSLASAVPKASARGASLRRGRSDDGFVVSKKTNQREHPSPRHPHQYLRHXXXXXXXGEHNSDQPQPKQRSPSTHAVI----LPKGG-----GLVLIGEDGV-RKSKFPRGCEPSS-------ATXXXXXXXXXXXXXXXXXXXXXDVLARLCNPKHFTGTAATGRLPVVVDLERGVGVLLKGASIAVKDHIGKQEVSWRLRLAERL 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7523.15507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4L8_ECTSI6.410e-4338.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLC7_9PHAE1.010e-3536.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7523contigH-paniculata_contig7523:2464..4918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000110.1
Exons4
Model size907
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7523.15507.1prot_H-paniculata_contig7523.15507.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7523 2482..4911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.7806046-UTR-H-paniculata_contig7523:2463..24811622930923.7806046-UTR-H-paniculata_contig7523:2463..2481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7523 2464..2481 +
1691481512.398814-UTR-H-paniculata_contig7523:2463..24811691481512.398814-UTR-H-paniculata_contig7523:2463..2481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7523 2464..2481 +
1622930923.8746278-UTR-H-paniculata_contig7523:4911..49181622930923.8746278-UTR-H-paniculata_contig7523:4911..4918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7523 4912..4918 +
1691481512.4644709-UTR-H-paniculata_contig7523:4911..49181691481512.4644709-UTR-H-paniculata_contig7523:4911..4918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7523 4912..4918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.8024366-CDS-H-paniculata_contig7523:2481..25261622930923.8024366-CDS-H-paniculata_contig7523:2481..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 2482..2526 +
1691481512.41384-CDS-H-paniculata_contig7523:2481..25261691481512.41384-CDS-H-paniculata_contig7523:2481..2526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 2482..2526 +
1622930923.8199103-CDS-H-paniculata_contig7523:2714..28821622930923.8199103-CDS-H-paniculata_contig7523:2714..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 2715..2882 +
1691481512.4269438-CDS-H-paniculata_contig7523:2714..28821691481512.4269438-CDS-H-paniculata_contig7523:2714..2882Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 2715..2882 +
1622930923.840079-CDS-H-paniculata_contig7523:3925..45041622930923.840079-CDS-H-paniculata_contig7523:3925..4504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 3926..4504 +
1691481512.4369948-CDS-H-paniculata_contig7523:3925..45041691481512.4369948-CDS-H-paniculata_contig7523:3925..4504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 3926..4504 +
1622930923.8614058-CDS-H-paniculata_contig7523:4821..49111622930923.8614058-CDS-H-paniculata_contig7523:4821..4911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 4822..4911 +
1691481512.4507113-CDS-H-paniculata_contig7523:4821..49111691481512.4507113-CDS-H-paniculata_contig7523:4821..4911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 4822..4911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7523.15507.1

>prot_H-paniculata_contig7523.15507.1 ID=prot_H-paniculata_contig7523.15507.1|Name=mRNA_H-paniculata_contig7523.15507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=294bp
MFKSANDSKSRFIHKHMKAAAAAALTNSPLPTELGEYGGTPATTSLSEPL
AVMTTETGLEDYRRWKEEIDWRWYLDHTANNNKRSTTGIDNHHNHRISQK
SRRRPRGRLCDGQIIPPVDGHVSFPEDGHTTSPVTHRGHAFTMGKGAEKP
LSTHDTKPQTKTVVKLASMGEGGHSIVGGSTLVCVDGVISKSPFPRGDAG
SYRGHCGGGVEVGFDNSRDLHSDGAMSSSKVEAVVRRLCDPKSFTGTAAT
GHLPITVDLEEGADVLLKDASIAVKDHVGTQEVSWRLRLAERL*
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mRNA from alignment at H-paniculata_contig7523:2464..4918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7523.15507.1 ID=mRNA_H-paniculata_contig7523.15507.1|Name=mRNA_H-paniculata_contig7523.15507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2455bp|location=Sequence derived from alignment at H-paniculata_contig7523:2464..4918+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCTGGTGAGACTAGGCATGTTCAAATCGGCAAACGACTCTAAGTCAAG
GTTTATCCACAAGGTGAGCTGTTGCAGATATATCCCCAGGAAGGGCGGAC
TACCGTGCAGCTTTGCACCAAGTCTTGAGGAAACGCACCACGAGAGGAAA
GCGCTTTATATTGGTTTCTCGTAAACGTGTGTCTGCCGTAGTAGTTGGGA
AATTTTGGCAGCTGAAAACCAAAATAGCAACCAAGCACCAATTGTTTCCA
GCACATGAAAGCGGCCGCGGCAGCAGCCTTGACTAATTCGCCTCTTCCGA
CGGAGCTCGGCGAATATGGGGGCACTCCCGCGACAACCAGCTTGTCGGAG
CCTCTGGCGGTCATGACGACCGAGACAGGACTCGAAGACTACCGAAGGTG
GAAAGAAGAAATAGACTGGGTAAGTTGAGTCGGGCTGCGCAATCGTAAGT
TATTGTGCAATCGGCTGCTAAAGTAGGAAGCGATAAGTATTTAGCAGCAA
TGGATTCCAAGACCAATCGAACGTATTGCTTACTACACATGGAGTCGTAA
TATCGGGCTCTGGGATGGTGGTAGGCCAGAGAGACAACTGAAGACCGTGT
TTTTTTGTTGTAGTTGGTGTTTCGTGCTGTGAAGGGCACTGTCCAATCGG
ATGTAAGTGATTATGGAAAGAAGTAGTCTACACTCAGTGACTCTGCGACC
GGGACACAGGAAAAAAGACCATCAATTGTCCAGTCGATCATTAATCCGTC
TGTACACTCTACTGCAGCATATTAAAATAATGGCAGTCGTTTCCAATCAT
TGAGATACAGCATGCGTTATTTATACCGGATCCATGGCAAACTTTAGTTC
TCTGTGCCTCGGGATTGGTTATTCGCGGCAGGCGGGTACCGCCAAGGCCC
GGCGAAGGTTGCGATGTGAGAGGCATGTCCCGCTCTTAGGAGAAGGTCGA
TATCGAAGATCCAGGCTTCAGCAGCGCAACAACAAGTGGGCACAAGTCTT
TGCCGGGGACAGGGTGATCGAGCCCACAGAATTGACCAGAGACGGACAAA
AGGTGAATATAGTGAGATCGACTTGTAGCACCTCTGTACCACCGGACGAT
TCTGGATAACGACGCGGCGAAACAGTTTGAGGCTGAAACAACTTTGACCA
GACGGTGTCAAGCCAAGTTGTGTGATAGTCACCTGTATGATGACCTACAG
TTAAAGCAGTGTGTATTGTCCTTTGAAGTCAGGAGAGCGATTGAACCAGG
ACCACATAAGCTGCGGCGCAGTAGTGCCAACGTACGCAAAGATAATTCAC
ACGATTCAGCGATGGATGTACACGCTTACGGTCCCCCACCACGAGCTGCT
TACTACGCGGGTCGATTGGGGTTTTGCGGATGCGCAGTGTGTAGCGTTTT
GACCGCCTTTGGGATTCCCTGTACTTACGCACTCCGTACTGTCGTTTTTG
TCGCCCCAGCAGCGTTGGTATCTGGATCATACCGCCAACAACAACAAACG
CTCAACCACTGGAATAGATAATCACCACAACCATCGTATCTCACAAAAGT
CCAGACGAAGACCCAGGGGCCGGCTTTGCGACGGCCAGATAATCCCACCT
GTTGATGGTCATGTTTCCTTCCCGGAGGACGGCCATACGACGTCCCCTGT
CACTCACCGTGGACATGCCTTCACTATGGGAAAGGGAGCCGAAAAGCCCT
TGTCAACCCACGATACGAAGCCGCAGACAAAAACAGTGGTGAAACTGGCG
AGCATGGGCGAGGGGGGGCATTCAATAGTCGGTGGTTCGACATTAGTGTG
TGTCGATGGGGTTATAAGCAAAAGCCCTTTCCCTCGAGGAGATGCAGGTA
GCTACCGGGGGCACTGCGGCGGGGGCGTGGAGGTGGGTTTCGACAACTCC
AGGGATCTTCACAGCGATGGTGCCATGTCGAGCAGTAAAGTGGAAGCGGT
GGTGAGGCGGCTGTGCGACCCTAAATCATTCACGGGTACTGCGGCTACTG
GACATCTTCCGATAACTGTGGATTTGGAGGAAGGAGCAGATGTGAGTCAA
TCGTACTTACTAGCTGTACTGCGTTGGGACGCGGTATACTGTCGTATCGT
ATGCCTTTCGCATGGCACAGTTGTCGCACAGTGATTTTCGGCCAAACATG
ACCGATTGTGCATTTCGCGCTTGGTTCAGACCGAGGAGGGCACATAACTT
TCTCTGGGGAAAAAGAGTTGACCAGATTTTGTGTCACGTGATGCTATAAA
ACATAATATATCCACCGCTGCATGTATGAGAAAACTTACGAGAGTGGATA
CATGTACAAACGTGCACTTCTAATGCCCTTGATGAACCAACGGCCGCAAC
CAATTCAGGTGTTGTTGAAGGATGCGTCCATTGCGGTGAAAGACCATGTG
GGCACGCAGGAGGTCAGCTGGAGGTTAAGGCTGGCAGAGCGACTTTGAAC
CTAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig7523:2464..4918+

>mRNA_H-paniculata_contig7523.15507.1 ID=mRNA_H-paniculata_contig7523.15507.1|Name=mRNA_H-paniculata_contig7523.15507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig7523:2464..4918+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAAATCGGCAAACGACTCTAAGTCAAGGTTTATCCACAAGATGTT
CAAATCGGCAAACGACTCTAAGTCAAGGTTTATCCACAAGCACATGAAAG
CGGCCGCGGCAGCAGCCTTGACTAATTCGCCTCTTCCGACGGAGCTCGGC
GAATATGGGGGCACTCCCGCGACAACCAGCTTGTCGGAGCCTCTGGCGGT
CATGACGACCGAGACAGGACTCGAAGACTACCGAAGGTGGAAAGAAGAAA
TAGACTGGCACATGAAAGCGGCCGCGGCAGCAGCCTTGACTAATTCGCCT
CTTCCGACGGAGCTCGGCGAATATGGGGGCACTCCCGCGACAACCAGCTT
GTCGGAGCCTCTGGCGGTCATGACGACCGAGACAGGACTCGAAGACTACC
GAAGGTGGAAAGAAGAAATAGACTGGCGTTGGTATCTGGATCATACCGCC
AACAACAACAAACGCTCAACCACTGGAATAGATAATCACCACAACCATCG
TATCTCACAAAAGTCCAGACGAAGACCCAGGGGCCGGCTTTGCGACGGCC
AGATAATCCCACCTGTTGATGGTCATGTTTCCTTCCCGGAGGACGGCCAT
ACGACGTCCCCTGTCACTCACCGTGGACATGCCTTCACTATGGGAAAGGG
AGCCGAAAAGCCCTTGTCAACCCACGATACGAAGCCGCAGACAAAAACAG
TGGTGAAACTGGCGAGCATGGGCGAGGGGGGGCATTCAATAGTCGGTGGT
TCGACATTAGTGTGTGTCGATGGGGTTATAAGCAAAAGCCCTTTCCCTCG
AGGAGATGCAGGTAGCTACCGGGGGCACTGCGGCGGGGGCGTGGAGGTGG
GTTTCGACAACTCCAGGGATCTTCACAGCGATGGTGCCATGTCGAGCAGT
AAAGTGGAAGCGGTGGTGAGGCGGCTGTGCGACCCTAAATCATTCACGGG
TACTGCGGCTACTGGACATCTTCCGATAACTGTGGATTTGGAGGAAGGAG
CAGATCGTTGGTATCTGGATCATACCGCCAACAACAACAAACGCTCAACC
ACTGGAATAGATAATCACCACAACCATCGTATCTCACAAAAGTCCAGACG
AAGACCCAGGGGCCGGCTTTGCGACGGCCAGATAATCCCACCTGTTGATG
GTCATGTTTCCTTCCCGGAGGACGGCCATACGACGTCCCCTGTCACTCAC
CGTGGACATGCCTTCACTATGGGAAAGGGAGCCGAAAAGCCCTTGTCAAC
CCACGATACGAAGCCGCAGACAAAAACAGTGGTGAAACTGGCGAGCATGG
GCGAGGGGGGGCATTCAATAGTCGGTGGTTCGACATTAGTGTGTGTCGAT
GGGGTTATAAGCAAAAGCCCTTTCCCTCGAGGAGATGCAGGTAGCTACCG
GGGGCACTGCGGCGGGGGCGTGGAGGTGGGTTTCGACAACTCCAGGGATC
TTCACAGCGATGGTGCCATGTCGAGCAGTAAAGTGGAAGCGGTGGTGAGG
CGGCTGTGCGACCCTAAATCATTCACGGGTACTGCGGCTACTGGACATCT
TCCGATAACTGTGGATTTGGAGGAAGGAGCAGATGTGTTGTTGAAGGATG
CGTCCATTGCGGTGAAAGACCATGTGGGCACGCAGGAGGTCAGCTGGAGG
TTAAGGCTGGCAGAGCGACTTTGAGTGTTGTTGAAGGATGCGTCCATTGC
GGTGAAAGACCATGTGGGCACGCAGGAGGTCAGCTGGAGGTTAAGGCTGG
CAGAGCGACTTTGA
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