mRNA_H-paniculata_contig7523.15506.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7523.15506.1
Unique NamemRNA_H-paniculata_contig7523.15506.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: D8LCJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCJ2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.130e-28
Identity = 50/66 (75.76%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVGKRK 198
            +AETPQYLRKQLFPMH +L+  G+LNPLDAPHHMR+DD CPFREGVV+D+ +KKGAGS V +GKRK
Sbjct:  337 YAETPQYLRKQLFPMHSSLRLAGLLNPLDAPHHMRADDACPFREGVVLDRTIKKGAGSFVDIGKRK 402
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: H3C881_TETNG (SPOUT domain containing methyltransferase 1 n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C881_TETNG)

HSP 1 Score: 95.1 bits (235), Expect = 3.860e-23
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVGKRKVR 204
            + E PQYLRK  FP H  L++ G+LNPLD+PHHMR+DD C +REGVV+D+  K G GSLV+ G RKVR
Sbjct:  104 YLECPQYLRKWFFPKHQDLQYAGLLNPLDSPHHMRTDDECEYREGVVLDRPTKAGQGSLVNCGMRKVR 171
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: A0A8B6BFE2_MYTGA (Uncharacterized protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BFE2_MYTGA)

HSP 1 Score: 94.7 bits (234), Expect = 1.330e-22
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVG 189
            + E PQYLRK  FP H  L++ G+LNPLD+PHHMR+DDNC +REGVV+DK VK G GS  +VG
Sbjct:  147 YLECPQYLRKSFFPQHKDLQYAGILNPLDSPHHMRADDNCQYREGVVLDKPVKTGKGSFANVG 209
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: A0A2S1TZH8_PIRSP (Methyltransferase (Fragment) n=1 Tax=Piromyces sp. TaxID=45796 RepID=A0A2S1TZH8_PIRSP)

HSP 1 Score: 91.7 bits (226), Expect = 6.200e-22
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVGKRK 198
            + ETP YLRK LFP+H  L++TG+LNPLDAPHHMR D+   +REGV +DK VK+GAGS V  G RK
Sbjct:   75 YLETPSYLRKLLFPVHKDLQYTGLLNPLDAPHHMRLDETSLYREGVTIDKPVKQGAGSFVTCGLRK 140
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: UPI001F0447E3 (LOW QUALITY PROTEIN: putative methyltransferase C9orf114 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0447E3)

HSP 1 Score: 94.7 bits (234), Expect = 1.180e-21
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVGKRK 198
            + E PQYLRK  FP HP L++ G+LNPLD PHHMR+ D  PFREGVVV++ VK+G GSLV+VG +K
Sbjct:  117 YLECPQYLRKSFFPKHPDLQYAGLLNPLDCPHHMRASDRLPFREGVVVNRPVKEGRGSLVNVGLQK 182
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: UPI0006B0845D (putative methyltransferase C9orf114 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0845D)

HSP 1 Score: 95.1 bits (235), Expect = 1.540e-21
Identity = 38/66 (57.58%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVGKRK 198
            + E PQYLRK +FP+HP L++ G+LNPLD+PHH+R+ D CPFREG+VV++  ++G GS V+VG++K
Sbjct:  176 YLECPQYLRKHIFPLHPDLQFAGLLNPLDSPHHLRTKDICPFREGIVVNRPAREGKGSFVYVGQKK 241
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: A0A6J8DAM6_MYTCO (SPOUT1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DAM6_MYTCO)

HSP 1 Score: 94.7 bits (234), Expect = 1.720e-21
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVG 189
            + E PQYLRK  FP H  L++ G+LNPLD+PHHMR+DDNC +REGVV+DK VK G GS  +VG
Sbjct:  147 YLECPQYLRKSFFPQHKDLQYAGILNPLDSPHHMRADDNCQYREGVVLDKPVKTGKGSFANVG 209
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: A0A8H4APT7_GIGMA (DUF171-domain-containing protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4APT7_GIGMA)

HSP 1 Score: 94.0 bits (232), Expect = 2.640e-21
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVG 189
            + ETPQYLRK LFP+H  L++ G+LNPLD PHH+R D+ CP+REGVV+D+ +K   GSLV+ G
Sbjct:  118 YLETPQYLRKDLFPVHQDLRYAGLLNPLDCPHHVRQDEKCPYREGVVIDRKIKYAKGSLVNAG 180
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: UPI0018D6A6FA (putative methyltransferase C9orf114 homolog n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6A6FA)

HSP 1 Score: 93.6 bits (231), Expect = 4.780e-21
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVG 189
            F E PQYLRK  FPMH  LK+ G+LNPLD PHH+R D+ CP+REGVV+D+ V +G GS+V+VG
Sbjct:  148 FLECPQYLRKNFFPMHNDLKFAGLLNPLDCPHHLRIDEACPYREGVVLDRAVGQGKGSIVNVG 210
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BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Match: A0A397U1Y2_9GLOM (Putative RNA methyltransferase n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397U1Y2_9GLOM)

HSP 1 Score: 93.2 bits (230), Expect = 4.950e-21
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDKLVKKGAGSLVHVG 189
            + ETPQYLRK LFP+H  L++ G+LNPLD PHH+R D+ CP+REGVV+D+ +K   GSLV+ G
Sbjct:  143 YLETPQYLRKDLFPVHQDLRYAGLLNPLDCPHHVRQDEKCPYREGVVIDRKIKYEKGSLVNAG 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7523.15506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCJ2_ECTSI4.130e-2875.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
H3C881_TETNG3.860e-2361.76SPOUT domain containing methyltransferase 1 n=2 Ta... [more]
A0A8B6BFE2_MYTGA1.330e-2263.49Uncharacterized protein n=2 Tax=Mytilus galloprovi... [more]
A0A2S1TZH8_PIRSP6.200e-2263.64Methyltransferase (Fragment) n=1 Tax=Piromyces sp.... [more]
UPI001F0447E31.180e-2163.64LOW QUALITY PROTEIN: putative methyltransferase C9... [more]
UPI0006B0845D1.540e-2157.58putative methyltransferase C9orf114 n=1 Tax=Limulu... [more]
A0A6J8DAM6_MYTCO1.720e-2163.49SPOUT1 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]
A0A8H4APT7_GIGMA2.640e-2160.32DUF171-domain-containing protein n=1 Tax=Gigaspora... [more]
UPI0018D6A6FA4.780e-2163.49putative methyltransferase C9orf114 homolog n=1 Ta... [more]
A0A397U1Y2_9GLOM4.950e-2160.32Putative RNA methyltransferase n=1 Tax=Gigaspora r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7523contigH-paniculata_contig7523:118..321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue4.2e-24
Seed eggNOG ortholog2880.D8LCJ2
Preferred nameC9orf114
KEGG koko:K09142
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0000922,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008168,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016441,GO:0016458,GO:0016740,GO:0016741,GO:0019222,GO:0022402,GO:0031047,GO:0031050,GO:0031616,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0035194,GO:0035195,GO:0035196,GO:0035198,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048285,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051235,GO:0051276,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051657,GO:0051661,GO:0051716,GO:0060255,GO:0061842,GO:0061980,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0071840,GO:0072686,GO:0090304,GO:0097159,GO:0098687,GO:0098813,GO:0140014,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1903047
EggNOG free text desc.SPOUT domain containing methyltransferase 1
EggNOG OGsCOG2106@1,KOG3925@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.732387-CDS-H-paniculata_contig7523:117..3211622930923.732387-CDS-H-paniculata_contig7523:117..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 118..321 -
1691481512.382431-CDS-H-paniculata_contig7523:117..3211691481512.382431-CDS-H-paniculata_contig7523:117..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7523 118..321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7523.15506.1prot_H-paniculata_contig7523.15506.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7523 118..321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7523.15506.1

>prot_H-paniculata_contig7523.15506.1 ID=prot_H-paniculata_contig7523.15506.1|Name=mRNA_H-paniculata_contig7523.15506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
FAETPQYLRKQLFPMHPTLKWTGVLNPLDAPHHMRSDDNCPFREGVVVDK
LVKKGAGSLVHVGKRKVR
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mRNA from alignment at H-paniculata_contig7523:118..321-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7523.15506.1 ID=mRNA_H-paniculata_contig7523.15506.1|Name=mRNA_H-paniculata_contig7523.15506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig7523:118..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGCCGAAACGCCGCAATATCTCCGGAAGCAGCTGTTCCCGATGCACCC
AACGCTGAAGTGGACTGGTGTGCTGAATCCGCTCGACGCGCCGCATCACA
TGCGATCGGACGACAACTGTCCTTTCCGAGAGGGAGTGGTCGTGGACAAG
CTGGTCAAGAAGGGGGCTGGGTCACTGGTCCATGTCGGCAAGCGGAAGGT
ACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig7523:118..321-

>mRNA_H-paniculata_contig7523.15506.1 ID=mRNA_H-paniculata_contig7523.15506.1|Name=mRNA_H-paniculata_contig7523.15506.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig7523:118..321- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGCCGAAACGCCGCAATATCTCCGGAAGCAGCTGTTCCCGATGCACCC
AACGCTGAAGTGGACTGGTGTGCTGAATCCGCTCGACGCGCCGCATCACA
TGCGATCGGACGACAACTGTCCTTTCCGAGAGGGAGTGGTCGTGGACAAG
CTGGTCAAGAAGGGGGCTGGGTCACTGGTCCATGTCGGCAAGCGGAAGGT
ACGTTTTGCCGAAACGCCGCAATATCTCCGGAAGCAGCTGTTCCCGATGC
ACCCAACGCTGAAGTGGACTGGTGTGCTGAATCCGCTCGACGCGCCGCAT
CACATGCGATCGGACGACAACTGTCCTTTCCGAGAGGGAGTGGTCGTGGA
CAAGCTGGTCAAGAAGGGGGCTGGGTCACTGGTCCATGTCGGCAAGCGGA
AGGTACGT
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