mRNA_H-paniculata_contig752.15503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig752.15503.1
Unique NamemRNA_H-paniculata_contig752.15503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig752.15503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig752contigH-paniculata_contig752:15533..17347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size187
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.3777964-CDS-H-paniculata_contig752:15532..156601622930923.3777964-CDS-H-paniculata_contig752:15532..15660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig752 15533..15660 +
1691481512.2376952-CDS-H-paniculata_contig752:15532..156601691481512.2376952-CDS-H-paniculata_contig752:15532..15660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig752 15533..15660 +
1622930923.394079-CDS-H-paniculata_contig752:17290..173451622930923.394079-CDS-H-paniculata_contig752:17290..17345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig752 17291..17345 +
1691481512.2458687-CDS-H-paniculata_contig752:17290..173451691481512.2458687-CDS-H-paniculata_contig752:17290..17345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig752 17291..17345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig752.15503.1prot_H-paniculata_contig752.15503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig752 15533..17345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig752.15503.1

>prot_H-paniculata_contig752.15503.1 ID=prot_H-paniculata_contig752.15503.1|Name=mRNA_H-paniculata_contig752.15503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
QGAPCAACLCRSLAALFLTSRTLGYYSTSCNVAQCWQLQSESRHSVRNSK
PQERCSAGRNC
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mRNA from alignment at H-paniculata_contig752:15533..17347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig752.15503.1 ID=mRNA_H-paniculata_contig752.15503.1|Name=mRNA_H-paniculata_contig752.15503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1815bp|location=Sequence derived from alignment at H-paniculata_contig752:15533..17347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGCGCACCTTGCGCTGCTTGCCTTTGCCGCTCCCTTGCTGCGCTGTT
CCTGACATCTCGCACGCTTGGTTATTACAGTACAAGCTGTAACGTGGCAC
AATGCTGGCAACTTCAATCAGAGAGCAGGTGGGTGCCGTACTAACAGGAA
ATCCCCTAAACTCCCTAATTTCCCCCCACCACGTCTTCAGCTCCTCACAT
AACTTTTGCCCCGTCACGCCTTTCGCTCGCGTGCGTGGCTCAGCTTGACT
TCCCTCCCCCGTTTCGAATCCTTACACCCCTTCTTGCTCGCTGCCTCCAA
CATACCCACCCTCCCTCTTTCAAATTTCTCTGTACTTGCACGATAGTCAC
CACTGAATTGGTGGGCTTTACTGTGTCATCTGCTCGGCTGTATCAATCCT
GGAACCGCACTCCACATGTATAACAGGCACTGTAACATACGATAATTCTT
CCCGTCTGTACAAACATCAGATTTTGTCTTCGACTCAATCTTTCATCTGC
TACTGTATATAACTCCCTCGGTGTCTTTTCTATATACTGACTTCTCGGTG
TGCGGTGAATGGTATTTGGGTTTTCGCCCCGCGGTACGGTGCGGTACAGT
GCAGTACGGCATATTATATCGGTATCGTGCGGTACAGTACAGTACAGTAC
AGTACAGTACAGTACAGTACAGTACAGTACAGTACAGTACGGCATATTAT
ATGGGTATTGTGCGATACGGTATCTGGTGTTTGGTATATCGGCGCCCAAG
CGCATGACACAGCCATACATACATCCACGGGGTATTTGGTGATGCTTGAT
ACGGGAAGTCCCACAAAGAAGCGATTCACCATGTGCCCGTAGCCCGTTCC
GCTGATTAGCACGTTGGAAATTTTGAAGGCAAAATACTACACCATACCAC
ACAACTCTTGTGTAATATTCCATTGCCGCTGTTGTTGGCATGGTCAGTAT
GTGACGCACTTCTATGACGCATGATGACGCCTGATCGTCGAAAGAAAAAG
AATGAGCACAACATGAAACAAATAATCGAACGTAAGCGTTTCGAAAAGTA
ACTGAAATATCCCAATCAGAGCAAATTGCATTACAGTCAAAAACACTCTG
AATTTATCTTTATAACATGGACTGGCAACCACCAATGTAAATTTCACAGA
AACCACGCGAGCGGATGATTCATGGCGCATGGTCCTACGGTACACTCACG
GTGTATGGTTTTTTCATGCTATAGTAGAGGTAATCCATTTTGGTTCATGT
TCGCGGTAATAGTAAACGGGAAGCGAATTTTTCACGTTCTCCGAATCAAA
TACGGAACGCTGTGTAACACCACAATATTTTTAGCTCGGTACGTTTGCCG
AGAACACCTCTGAAAATAAGTAGCTGCATGCTTAATCGCACATAGAAAGT
GAATTTTCTATCGTACGCAGAAAGGAAGAAGGTATCCGCAGGTTTCCTGT
TGGTCAATTCTATTGAAAGCAGCCGTCTGATTGGTCGAACAACAATCCTT
GGTTGACGAGTGACGTGACTCATTGTCATGACGTCATAATTGGATCTCGG
TGTAATTTCTTGGCATGGATGACATCATTTTCGGCAACACTTCGTTAAGA
AATCTAAATTAAGCTGAGGTGGAAACTTCCGCATGGTCGGGATTTTGTCA
GAAGCAACAATGACTAGTACGATAATACATTTATCTCAAACCCAACATTT
ATGTGTACCTTTATCGCATGGCATGGCATGGAATCGTCCTATATCCATGT
GGGCTTAGGCATTCCGTACGGAACAGTAAACCTCAAGAAAGGTGTTCCGC
CGGGAGAAACTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig752:15533..17347+

>mRNA_H-paniculata_contig752.15503.1 ID=mRNA_H-paniculata_contig752.15503.1|Name=mRNA_H-paniculata_contig752.15503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig752:15533..17347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGCGCACCTTGCGCTGCTTGCCTTTGCCGCTCCCTTGCTGCGCTGTT
CCTGACATCTCGCACGCTTGGTTATTACAGTACAAGCTGTAACGTGGCAC
AATGCTGGCAACTTCAATCAGAGAGCAGCAAGGCGCACCTTGCGCTGCTT
GCCTTTGCCGCTCCCTTGCTGCGCTGTTCCTGACATCTCGCACGCTTGGT
TATTACAGTACAAGCTGTAACGTGGCACAATGCTGGCAACTTCAATCAGA
GAGCAGGCATTCCGTACGGAACAGTAAACCTCAAGAAAGGTGTTCCGCCG
GGAGAAACTGTGCATTCCGTACGGAACAGTAAACCTCAAGAAAGGTGTTC
CGCCGGGAGAAACTGT
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