mRNA_H-paniculata_contig7513.15494.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7513.15494.1
Unique NamemRNA_H-paniculata_contig7513.15494.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7513.15494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7513contigH-paniculata_contig7513:8434..10979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size547
Cds size546
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7513.15494.1prot_H-paniculata_contig7513.15494.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7513 8434..10979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.4032528-CDS-H-paniculata_contig7513:8433..86081622930922.4032528-CDS-H-paniculata_contig7513:8433..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 8434..8608 +
1691481511.8139071-CDS-H-paniculata_contig7513:8433..86081691481511.8139071-CDS-H-paniculata_contig7513:8433..8608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 8434..8608 +
1622930922.4257402-CDS-H-paniculata_contig7513:8844..89821622930922.4257402-CDS-H-paniculata_contig7513:8844..8982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 8845..8982 +
1691481511.8257127-CDS-H-paniculata_contig7513:8844..89821691481511.8257127-CDS-H-paniculata_contig7513:8844..8982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 8845..8982 +
1622930922.4493768-CDS-H-paniculata_contig7513:9695..97761622930922.4493768-CDS-H-paniculata_contig7513:9695..9776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 9696..9776 +
1691481511.8433287-CDS-H-paniculata_contig7513:9695..97761691481511.8433287-CDS-H-paniculata_contig7513:9695..9776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 9696..9776 +
1622930922.4952478-CDS-H-paniculata_contig7513:10130..102141622930922.4952478-CDS-H-paniculata_contig7513:10130..10214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 10131..10214 +
1691481511.85351-CDS-H-paniculata_contig7513:10130..102141691481511.85351-CDS-H-paniculata_contig7513:10130..10214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 10131..10214 +
1622930922.5117197-CDS-H-paniculata_contig7513:10911..109791622930922.5117197-CDS-H-paniculata_contig7513:10911..10979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 10912..10979 +
1691481511.8639588-CDS-H-paniculata_contig7513:10911..109791691481511.8639588-CDS-H-paniculata_contig7513:10911..10979Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7513 10912..10979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7513.15494.1

>prot_H-paniculata_contig7513.15494.1 ID=prot_H-paniculata_contig7513.15494.1|Name=mRNA_H-paniculata_contig7513.15494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
NKVRLFLVADGTLHLKNLSLERGNATHGGAIYAYGDSAVSLTDCLLQDCR
AYNLSGRGGAVAVHDEVSLDLDGTTFAGNLAGPLYNFNADYSADYQEVEV
YGLGGAISSYSSSPITLQGENIFEGNAALRAGAIWLYLGTLNMTDGSKTT
FNANHGGYGGAIDMYGGTANLTGTSSFLNNSA
back to top

mRNA from alignment at H-paniculata_contig7513:8434..10979+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7513.15494.1 ID=mRNA_H-paniculata_contig7513.15494.1|Name=mRNA_H-paniculata_contig7513.15494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2546bp|location=Sequence derived from alignment at H-paniculata_contig7513:8434..10979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAGGTCCGCCTTTTCCTGGTGGCGGATGGGACGCTCCACCTTAAGAA
CCTTTCTCTCGAGCGCGGGAACGCAACGCACGGCGGGGCAATCTACGCAT
ATGGTGATAGCGCCGTGTCCTTAACCGATTGCCTTCTTCAGGACTGCCGT
GCGTATAATCTGAGCGGACGTGGAGGTTCGTTGATACGAAAAATAAAGTG
CACCACCGCGAAAAATGAAGTTCGTGCACGTGGGGGTAGGGTGGAATACT
GGATACTACGTTGGGACGGAGGAGCTCGGTAGTGTCCATATAACCTCGCT
GTACTTGAACATCAAAGCAGCTGTAGCCAGGCTTCACTACGATACTGACG
GTGTTACAAAAACTTCAATGCAAAAAGTCGTTTGCACGTGATGAATCGCT
TCTCGCTACAGGTGCCGTTGCAGTGCATGATGAAGTCTCGCTGGATTTGG
ATGGCACTACCTTCGCCGGAAACCTCGCAGGGCCGTTGTATAACTTCAAC
GCCGACTACAGCGCGGACTACCAGGAAGTCGAGGTGTACGGTTTGGGCGG
TAAGCACGCAGCAACGACTTTATTTTATTTATTCCTCTGTGCCCAAACCA
CAGTAAAATATGTTTGTACAAGGGACAAGAGATATCTGAATCCATTTCTT
TTGCATTTCAGAAATCCTTGAATTTTTCTGGGTGGAACCTGCACATATTG
ACCGAAATATGTGAAATCCATCAATTGCGGGCACGGCGTAAAGAAAAGCA
AATTCCTTTTAACCTCTTGTTTTTTTATGGTACTAAAAGAATTACGTTTA
CAAGGAGAACTGCAACCGCGATCCCCCTCCTCCGTATCATGTCGCAAAAT
GTACCCGCACTCATGCACAGTGCCTTGAGAGCAAACGGCGTCATGGTCTA
CCATTATTGAACTGTTCGTTTCGCGAGAGCTTGCCAAGGCGAAGAGAGCC
CTATTCTCAGATACTTCTCAGTTGTTAATCGCCTAGTCGTGCTTGTCCGA
GGCTGCACCACCGTAGGCAGCCCGAATCAGGAACGGGACCTCGTGAACGC
GTTGTTGCTAAGGGATGGAGCTTTCAAACAAACGTGGTCTCAAATGACTA
GCCGCTTTCGAGATCGAGGTATCAGATTCTCGAAAAGTAGCACATTGATT
AATTGTGACATCCGCGATTGTAAGTGTAACCACGCTCACCACATTGTCTT
TTTCCTACAACCTGCAACTGCGTCATTCCTTGCCTGTTTGAATGGATATT
TTCCGCATGTAGGCGCAATTTCCTCGTATTCGTCCAGCCCAATTACCCTT
CAAGGCGAAAACATATTTGAAGGGAACGCGGCGTTGCGAGCTGGTGAGAG
CATTGCACGAAGTGCTTTTTGTTATTGATTTTTTATTTTTACTTTGTGTT
CATCGTGCCTATCTACTGGAAGCGTGTCGTTTTGGCCGTCCGCCGACAAG
CAGGTATTTTCAAACATCGAACGAGACGCGTCATCCAATAGTATGCTTAT
GTATCTGCCTCAGTTGGATTACTGTACTCGAGAGACTTCAGGTTATTTAG
TTTATGTTTTGCTGTGTTTATTTGAAGTTAACAAGCAAAGAAATCACGCA
AAGAAATGCCATCACGGTCAGGGATTAGGGTTATTGGGCTCTCCGCATTT
TCTGAAGGGGGCATTACAAGCAAAATTCTCTCGTCTCGGAACTGTAGGTG
CAATCTGGCTCTATCTCGGAACCTTAAACATGACGGACGGGTCCAAGACA
ACCTTCAACGCCAACCACGGTGGCTACGGTGGTGAGCAAATAGATCGCGG
TTCTACAGTAAAGGACACCATAATTTAGAGTTTAATTGATTGTTGAATAA
CTGATATCTCGACATTGGGAGTGGCTAGCGAGCCGAGGCAAAGTTTGTTG
GAGAGAGCTGTTCTTGGCTACAACACCTTCTCGAGGTCCAATCCCTGTTT
TGACCTTCGGAAGGTGCTGTCACCTCTAAAACACAACACTCTCAAATGCA
TTGTGTCCGTCGCTTTAAGTTTTCCCGTCTCGCGGAAGTCGTAAGCAGCT
ATTTGGAGAGGGGAGGGTTCTTGCACACAGGCCGCGCAAGCTATCATGCT
GTGTATTACAGGTCTCCAGCGCTTAGTAGCGCAATCCTTTTCTTTAGCAA
TGGACAAAATCAGTGGAATAAAAATGTTGCATAACGTGCAGCAGGCCCCG
TTGCGTTTTGCCTGGTGGTATAGACGTTTCCCGCGGCCGGGTCAAGTTTC
TTGTGACGAGCCCCCCCTTCCATTACGCGCTAGCTGGAACAACGAACGCA
AAGGGTTCACGCAGTCAGTTGTATGTTTCAGAGTGATGAGAATACATACT
GACAGTACTGCATACTGACAGTACTACATACTCCGACTACTGTGTGTTCT
TTGATGTTCTTGCAAAAGTGATTGTTGTCGTGACTGCACTATCAGCCAAC
ACCCGAAGATCCAACTCGATTCTCCCAGGTGCTATCGACATGTACGGAGG
AACAGCAAACCTCACGGGCACGTCCTCCTTTCTAAATAATTCTGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7513:8434..10979+

>mRNA_H-paniculata_contig7513.15494.1 ID=mRNA_H-paniculata_contig7513.15494.1|Name=mRNA_H-paniculata_contig7513.15494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig7513:8434..10979+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAGGTCCGCCTTTTCCTGGTGGCGGATGGGACGCTCCACCTTAAGAA
CCTTTCTCTCGAGCGCGGGAACGCAACGCACGGCGGGGCAATCTACGCAT
ATGGTGATAGCGCCGTGTCCTTAACCGATTGCCTTCTTCAGGACTGCCGT
GCGTATAATCTGAGCGGACGTGGAGAACAAGGTCCGCCTTTTCCTGGTGG
CGGATGGGACGCTCCACCTTAAGAACCTTTCTCTCGAGCGCGGGAACGCA
ACGCACGGCGGGGCAATCTACGCATATGGTGATAGCGCCGTGTCCTTAAC
CGATTGCCTTCTTCAGGACTGCCGTGCGTATAATCTGAGCGGACGTGGAG
GTGCCGTTGCAGTGCATGATGAAGTCTCGCTGGATTTGGATGGCACTACC
TTCGCCGGAAACCTCGCAGGGCCGTTGTATAACTTCAACGCCGACTACAG
CGCGGACTACCAGGAAGTCGAGGTGTACGGTTTGGGCGGTGCCGTTGCAG
TGCATGATGAAGTCTCGCTGGATTTGGATGGCACTACCTTCGCCGGAAAC
CTCGCAGGGCCGTTGTATAACTTCAACGCCGACTACAGCGCGGACTACCA
GGAAGTCGAGGTGTACGGTTTGGGCGGCGCAATTTCCTCGTATTCGTCCA
GCCCAATTACCCTTCAAGGCGAAAACATATTTGAAGGGAACGCGGCGTTG
CGAGCTGGCGCAATTTCCTCGTATTCGTCCAGCCCAATTACCCTTCAAGG
CGAAAACATATTTGAAGGGAACGCGGCGTTGCGAGCTGGTGCAATCTGGC
TCTATCTCGGAACCTTAAACATGACGGACGGGTCCAAGACAACCTTCAAC
GCCAACCACGGTGGCTACGGTGGTGCAATCTGGCTCTATCTCGGAACCTT
AAACATGACGGACGGGTCCAAGACAACCTTCAACGCCAACCACGGTGGCT
ACGGTGGTGCTATCGACATGTACGGAGGAACAGCAAACCTCACGGGCACG
TCCTCCTTTCTAAATAATTCTGCTGTGCTATCGACATGTACGGAGGAACA
GCAAACCTCACGGGCACGTCCTCCTTTCTAAATAATTCTGCT
back to top