mRNA_H-paniculata_contig750.15478.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig750.15478.1
Unique NamemRNA_H-paniculata_contig750.15478.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig750.15478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig750contigH-paniculata_contig750:19025..21446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size209
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.42555-CDS-H-paniculata_contig750:19024..191551622930920.42555-CDS-H-paniculata_contig750:19024..19155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 19025..19155 -
1691481510.989811-CDS-H-paniculata_contig750:19024..191551691481510.989811-CDS-H-paniculata_contig750:19024..19155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 19025..19155 -
1622930920.4452875-CDS-H-paniculata_contig750:21370..214461622930920.4452875-CDS-H-paniculata_contig750:21370..21446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 21371..21446 -
1691481511.0019171-CDS-H-paniculata_contig750:21370..214461691481511.0019171-CDS-H-paniculata_contig750:21370..21446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 21371..21446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig750.15478.1prot_H-paniculata_contig750.15478.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig750 19025..21446 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig750.15478.1

>prot_H-paniculata_contig750.15478.1 ID=prot_H-paniculata_contig750.15478.1|Name=mRNA_H-paniculata_contig750.15478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MVTDRGRGNFADGGAVAGGGWPAQPDLRRARFPPSLDMPSRGQSLGLAEA
TMLSSSSNTDGDPLTIAEK
back to top

mRNA from alignment at H-paniculata_contig750:19025..21446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig750.15478.1 ID=mRNA_H-paniculata_contig750.15478.1|Name=mRNA_H-paniculata_contig750.15478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2422bp|location=Sequence derived from alignment at H-paniculata_contig750:19025..21446- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACGGATAGGGGTCGAGGGAACTTTGCTGACGGCGGCGCTGTTGC
TGGGGGTGGGTGGCCTGCACAACCAGGTGTTGATCTCGGATCGATTTTCC
ATTTGTATGGAGTCAGTGTTCTTCACGTAATGTATGTAGCAGCACATTTG
TACATTCTTATTGGTGGTGTGTTTATGGTTCACTGTGACTTGCCAAATTT
TTAAACGTCGTCACAGATATTACTATTGCCAAGAAAGGTTACAGACTTCT
GTCTCTTTTGTTGCTCACGAATCATTGTGATTCCTGTATCTTGTGTCATG
AGAGTGCTGAGTTTTTCACTCTATTTTACTATAAGGTTGTTTGTTCTAAG
CGCCGTAGTATTTACAGCTGGACGGGGCGGGGATTCATTTGTCCGTCTTT
TCATGTTATTTGTGAAATTTTAGAAAAAAAGTCCGAAATTTCGAAAATGA
ACGAGTTTCAATTATAACAGAGGCGATTTTTCCGTTACCTGTAAAAAGAA
AACATGTATGGTGGTTGTTTCACTGTTTTTGACTGTTTATTTGTTATTTG
GAGTTTGGGTACCGGGCAAAACTCAAGAGCTGTGAGCCAAAAAAAATAAA
ACAGTCCAGTGCGGGTCAAATTGGGCCCAGCAGCGTTTAAAACGTGTCAA
AGCTACGTCGCTCCGCTGGCAATGACCATTACAGCTAAACCACAGTACTT
ATACTCAACGGGTAGTAGTGCTGTCAAGTCCAGTGACTGTACTTCTGTTC
CATTCATGAATCTGGCAATAAATACGAAGTTCCAGCTGTAGTTCACCTTT
TTTTCGCGCACTTTTGTTCTCGCGTACAATCTGTTTCTCCTTTATGTTTT
TTGTTTTCCGTTATTGTTGGTTTGCCCGCCTCCAATCATTTATATTTTGT
TGTTGCACATCTTTCACCTACCTCTAGACCTTCTCTCCTCGCCGTGTTCT
CAAGATCGGTCCGTATTTTCTATTGACTCCTTTCCCCCACGTGGTTCACG
CTTGATCTATTAGCAGTGATGGCCACTTCTAGCGAACGATTCACTCGTAG
ATTCAACCCATTCCAAGAACAAACCTAGACAGACAGACTTACTTCATTTT
CTCTGACCCGTGCTGGCGAGATAATGTCACTTATTTTCCAAAATCGGATT
CCTTCCAGCACATAATCGTCGGTCGGAAATTTGAAAATCATTTCTTGCAG
CAAATCGAACGCGTAAAAATGTTTGCCTATATATTAAAGAAAAAATTGAC
AAGTTCCTGACAATATTAGACTTGCAGCATAGTTTTGTTCACTCTTTTTG
CGTGCTCTCTGTGCATGTGCATGTGCATGAAACATAAGAGAGCAACCCAC
ATCAAACCCACGTTGACGGCCCCTTTTAAAAAAAACACGCTCCCTTCCAA
CCCAGCGTTGTTGATTGATGTAAGCTCTTGGCGACCTCCTTGGAAACACA
TAGCAGCAACAGATGAGTAAATACAAAAGCTGGCCGCACGGTTAATGTTT
GTGCATCATGAAAGGGTCCGAGGGAAAGAAAGGGTGTGTCGGCACAGGCG
GGCCATTTCCGGCAGGGTTAGCCTCGGTCTTATTGGCCAACCTCAAGGTG
TTCCAAGCATCGACCGAACAAATTGGAACTTCAGGTTCAATTTGAACTTT
TCCTGTATGCCCACCTATCCCGAAATACTCGCTCAAGATTTCTTAACATA
AAAAAAAAAAAGGTAAAAAAAACGATTCGTCGTGATCCAGAAAACTCAGT
TTTGAACAGGAACAACGTTTCCGCGAATACTCGATTAATATTCATAGTAA
AAGGTGTTTGTTCATTCCCGACTTTTTCTGTTTGTTTCTGATTTTCCGAC
GCAACCAACCTCACCCCGGTACCACTCGCCGTTGCATGAACAAACATGAG
GCAAGAAATGGGAGGAACACGCCAATTGTTTAGAACGCCCCTGACTGGGT
CATTCAGCAGATTATCCGGTCTGTAAACTCTCAGGAATAACTGATCGATC
GCAAATAGCTCGTTCGTGTGTTGCGTCGCGGATCATCATGTTACTACGCA
CCTTACCCTTTCCCACTATTACAAGTCTCCTCTGCTCTGCTCCCTCCGTT
GCTCTTGACAAGATAGCCGAATAGCTAGTCAGCTAGCGACCTACAGGGCT
TTCTTGAAGCGCAAACATTTTTTTGATATAATACGCAATTCATGTGTACA
TATGTAGTATCTTCCTCTCAAATACTCAAATACTTTGTCGTCGGCATCAA
AGGTCTGACACTCATCCATGACCTTTTTATCGCGTGAGCAGATCTTAGGC
GAGCTCGATTTCCGCCCTCACTGGACATGCCCTCTCGCGGCCAGTCCCTG
GGATTGGCTGAAGCTACTATGTTGTCCAGCAGCAGCAACACTGATGGCGA
TCCTCTAACGATTGCCGAAAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig750:19025..21446-

>mRNA_H-paniculata_contig750.15478.1 ID=mRNA_H-paniculata_contig750.15478.1|Name=mRNA_H-paniculata_contig750.15478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig750:19025..21446- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGACGGATAGGGGTCGAGGGAACTTTGCTGACGGCGGCGCTGTTGC
TGGGGGTGGGTGGCCTGCACAACCAGATGGTGACGGATAGGGGTCGAGGG
AACTTTGCTGACGGCGGCGCTGTTGCTGGGGGTGGGTGGCCTGCACAACC
AGATCTTAGGCGAGCTCGATTTCCGCCCTCACTGGACATGCCCTCTCGCG
GCCAGTCCCTGGGATTGGCTGAAGCTACTATGTTGTCCAGCAGCAGCAAC
ACTGATGGCGATCCTCTAACGATTGCCGAAAAGATCTTAGGCGAGCTCGA
TTTCCGCCCTCACTGGACATGCCCTCTCGCGGCCAGTCCCTGGGATTGGC
TGAAGCTACTATGTTGTCCAGCAGCAGCAACACTGATGGCGATCCTCTAA
CGATTGCCGAAAAG
back to top