mRNA_H-paniculata_contig750.15477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig750.15477.1
Unique NamemRNA_H-paniculata_contig750.15477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig750.15477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig750contigH-paniculata_contig750:18093..18982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.346616-CDS-H-paniculata_contig750:18092..182151622930920.346616-CDS-H-paniculata_contig750:18092..18215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 18093..18215 -
1691481510.9651203-CDS-H-paniculata_contig750:18092..182151691481510.9651203-CDS-H-paniculata_contig750:18092..18215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 18093..18215 -
1622930920.379032-CDS-H-paniculata_contig750:18895..189821622930920.379032-CDS-H-paniculata_contig750:18895..18982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 18896..18982 -
1691481510.9777002-CDS-H-paniculata_contig750:18895..189821691481510.9777002-CDS-H-paniculata_contig750:18895..18982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig750 18896..18982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig750.15477.1prot_H-paniculata_contig750.15477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig750 18093..18982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig750.15477.1

>prot_H-paniculata_contig750.15477.1 ID=prot_H-paniculata_contig750.15477.1|Name=mRNA_H-paniculata_contig750.15477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
VGCGTEVDGPGLQQGAFPAATADELDVNSIFSGMTSADVGQFRATGSDGS
QPLRDDWVACLSSPQAIAGP
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mRNA from alignment at H-paniculata_contig750:18093..18982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig750.15477.1 ID=mRNA_H-paniculata_contig750.15477.1|Name=mRNA_H-paniculata_contig750.15477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=890bp|location=Sequence derived from alignment at H-paniculata_contig750:18093..18982- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGTTGCGGCACAGAGGTCGATGGCCCGGGGTTACAGCAGGGAGCATT
CCCGGCGGCCACTGCGGATGAGCTGGACGTAAACTCGGCGAGTTCATGTG
TAGTTCGTGTATCATGCCAGCGGGTTCGATTTCTGGGGTTTTGTCTGGTT
GGGATAGCTTGTTTTTTGGTCGCCTGTCGTCCGTCGTCTGTGCGTCATTA
GTGGGTCTGTGCGTCATGAGTGGATAGAGGCTGGAATCGGTTTCATGACT
CAAACACCTAGAAACAAACAAACTAGGAGCCATATATGTGCTCTCTCTCT
CTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTAACATCGGAGGAGCCG
GATAGGAATGTCCGAATCTTATGTGGCTCCTTCACATAAGCTACAAGTAT
ACGGAAGGATACGTGCGTGGTGTTGCATTAGAGCCCTGTCAGAATAGTCT
AAAGCGCAACAGTTGTTGGTGTCCAAATCGTTCTCATATGTACGACACCC
CCCCCGTCATGGCGTGGAGATTTTGGTGATATATCCACCGCCCCGCGCAG
AAGAACGACACCAGAATACATACATAGACATCGAGTGTCTACCGTTATAT
CTCCTTTGTAGTTCCATAGCAAGCAGCTCATTTCCGTGGTTATTGAATAA
TAGCTATTTATGCTCGGTTGATGTTGGCTGCATGCAGTATTATTGGTTTT
GCTGTATCTGATCGTTTTTAGTTCCGTTCATGCCCCCACAACACAAAATA
TATTCTTCGCCGTCTAGATCTTCTCGGGTATGACCTCTGCTGACGTTGGG
CAATTCCGAGCGACCGGGTCTGACGGCTCGCAACCATTGCGGGATGATTG
GGTGGCTTGTCTCAGTTCTCCGCAAGCTATCGCGGGCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig750:18093..18982-

>mRNA_H-paniculata_contig750.15477.1 ID=mRNA_H-paniculata_contig750.15477.1|Name=mRNA_H-paniculata_contig750.15477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig750:18093..18982- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGTTGCGGCACAGAGGTCGATGGCCCGGGGTTACAGCAGGGAGCATT
CCCGGCGGCCACTGCGGATGAGCTGGACGTAAACTCGGTGGGTTGCGGCA
CAGAGGTCGATGGCCCGGGGTTACAGCAGGGAGCATTCCCGGCGGCCACT
GCGGATGAGCTGGACGTAAACTCGATCTTCTCGGGTATGACCTCTGCTGA
CGTTGGGCAATTCCGAGCGACCGGGTCTGACGGCTCGCAACCATTGCGGG
ATGATTGGGTGGCTTGTCTCAGTTCTCCGCAAGCTATCGCGGGCCCGATC
TTCTCGGGTATGACCTCTGCTGACGTTGGGCAATTCCGAGCGACCGGGTC
TGACGGCTCGCAACCATTGCGGGATGATTGGGTGGCTTGTCTCAGTTCTC
CGCAAGCTATCGCGGGCCCG
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