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Homology
BLAST of mRNA_H-paniculata_contig7496.15474.1 vs. uniprot
Match: D7FY81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY81_ECTSI) HSP 1 Score: 168 bits (426), Expect = 7.440e-45 Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 2
Query: 11 GSMSADEVKYHLTMGLLGPEGSVINELEGRAPQKIIADVCLTCDEDFLLTDENGNVVHATGSDEPKVHYMTLQSNIRQDGEFEWQVTNINDVILPTFEYYFSRFGH 328
G MSADE +YHLTMG+LGPEG +INELEGRAPQ++IADV LTC+E+F++ D GNVVH S PKVHY+TLQSNI +D E EWQ+TNINDVI PTF YYFSRFGH
Sbjct: 226 GMMSADEARYHLTMGMLGPEGVLINELEGRAPQRVIADVELTCEEEFVVEDGKGNVVHKLESQGPKVHYITLQSNIGKDAELEWQITNINDVIKPTFNYYFSRFGH 331
BLAST of mRNA_H-paniculata_contig7496.15474.1 vs. uniprot
Match: W7TAG0_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG0_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 9.710e-8 Identity = 37/111 (33.33%), Postives = 56/111 (50.45%), Query Frame = 2
Query: 11 GSMSADEVKYHLTMGLLGPEGSVINELEGRAPQKIIADVCLTCDEDFLLTD-----------------ENGNVVHATGSDEPKVHYMTLQSNIRQD-GEFEWQVTNINDVI 289
G+M E H+ G++GPEG ++ ELEG P++++A+V L+ +E F E G G + + HY T +S+ D G+ EW V+NINDVI
Sbjct: 183 GTMGRYEALTHIWEGVIGPEGRLLQELEGNVPRRLVAEVELSVEESFWFQSRPATAWPRVGNNAEQDLEQGLTGGKQGEMKKRTHYFTFESDYFGDEGQLEWVVSNINDVI 293
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 166.4 |
| Seed ortholog evalue | 7.2e-39 |
| Seed eggNOG ortholog | 2880.D7FY81 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2C319@1,2SY82@2759 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-24_003470.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1344 |
| Cds size | 315 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7496.15474.1 >prot_H-paniculata_contig7496.15474.1 ID=prot_H-paniculata_contig7496.15474.1|Name=mRNA_H-paniculata_contig7496.15474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MSADEVKYHLTMGLLGPEGSVINELEGRAPQKIIADVCLTCDEDFLLTDE NGNVVHATGSDEPKVHYMTLQSNIRQDGEFEWQVTNINDVILPTFEYYFS RFGH* back to topmRNA from alignment at H-paniculata_contig7496:180..8517+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7496.15474.1 ID=mRNA_H-paniculata_contig7496.15474.1|Name=mRNA_H-paniculata_contig7496.15474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8338bp|location=Sequence derived from alignment at H-paniculata_contig7496:180..8517+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AAATTTCCTGGGGTCAATGAGTGCCGACGAAGTCAAGTACCATCTCACGA
TGGGTTTGGTGAGTTACACAGTATGTACCGTTCCTCCAAGTTGAATGCAC
AGACGTCGCGGCGGTTTTGGTTTTTGGTGATGCTGATGCTACACTTGTGT
CCAGAGGCACATGGCCGTTTTTCACAATGCTTCCGTTGCCTGTTGCATAA
GTCTTGCACGGTGAAGAAAGCATGCTATAATAAATGGTTTTACATGGTCA
TGTCTGTGCTGGGCCATGTATTGGCGCTGGCTGCTTTTTGTTGTTTTTCT
GTCAGCGTTCCCTCACGACAGCGGCCGAAAACGGTTTTCAACCTTTTTGT
AGATACCTACTCAGGACGATGGGCAGGGCCCAACCTTCTCATCGGAGTGA
GGGCACGGACAGACGTTCTCTCTCTCTCTCTCTCGGGGCCACGGGGCGTG
GGTTACGTCTTGTGGGTTCGAACGGGTTCACGGTTGTGTGACCGGGTCAA
ATGTGGCAGTGACAAGGGGTGGCGTCTCGTGAGCCCCAGCCCTGCCGTGG
AGTATGGACTCAACTCGGGATAAGGTTGGATAATGACCCGAGAGAGATTG
ACATTCGTCAAAGAGACAAGCAGGCGTGTCGGATGTAGGCAGCCAGATAA
TCACATTTGCGTGTACTTCAACAATATTCATAAGAATAGTTACACAACCT
AGTCGGACTCTCTGCATGCTCTCTCAAGTACTAGTACAGGTATTTGAAAT
GACACGGTCGCACCTCCAATAGTTGATTGACTATTTTTGCGGTAGATTTT
TCCATGCCTTGTACTCCGAGCAAGGTACTTTGTTGTGTATACGTCTACCT
GTTCCAAAAATGAACGTATTCCATGTTGTGATCGATGGCCTCCTGTCCAC
ACCTCGGATGGAGGTCAATGAAAGTCGTCTCGTCGCGGATTTTGGAAACA
TTACTTTTCATGACAGCATGACGATCATTCTTGGCGCCTTCCAAAAAACT
CGTTGATTGGATATTTTTTCAGGTTATTTCATACATTCGCGAGTGTTGGA
ATTTTTCTAGAGTACGAGCGCACGTACCTTCGTTCTTTTCTTTGTATCAG
CAGGAAGGAGGACCGTTGACTAACAGTTGAAGGTTCCATAAAGCTGTTTC
TACTTGGTAAGAAAACCGTGATCCGAGCTATCGTTCTGCTCCAGTATTAA
TCCGCCTCCTTCCCTATCTTTTAAATAGTTTGGCCAGTTTATGAACAAGT
ATAATTTAGCAGCTTCAATATGCTGACACATACCCCTCCATTTGGTTTTA
CGGTTGTACTATCAAGCTTTCACCTCCTGGATAAAAACGAATCATGGGCG
TATTATTCGCCATTATAATGAAGCAGTACTCCCCTAAGTTTCAGAATAAG
CTCGCGTATTCGATGTGCCCCTGACCATCAACGACTGCTAACAATACTCG
GAAGTCGAATGGACAGGGGTGAGTACTTTATTTTATGTGTCCGCTCATTC
TGAAACTCAGGCGACTACTTGAAAAAAGTTCGTGGCGAATACGCCAATTA
TTCGTATTCGTCCGGAGGGTGCAAGTTTTCTGTGGTGACTTCATCTGCTT
CTTCACTCCTGTGATACTTTTTCCTAACCATGTTCTCATCGTGTAGCCCC
TCCCTTTCCCCCCCCGCCACCTCCTCCTCCTTTCTCTCTCCGAGTAGCTA
GGTCCCGAGGGTAGCGTGATTAACGAGCTCGAAGGACGGGCTCCTCAGAA
GATCATCGCCGACGTTTGCCTGACCTGCGACGAGGACTTTTTGTTAACAG
ACGAGAACGGTAATGTTGTACATGCAACTGGATCCGACGAGCCAAAGGTG
ATCTTGAAAAGAAAAAACACACTATTTATGAACACACCATTCGGTTAAGA
TATATCACGTATAAGTCAGGACTGTCGTCGTTGACCTTAACTAATTGAAA
AAGGCATGGAAAAAACACCGTCTCATTAACATGTGGTGGGGTATGAATCA
TTATATTTGCCGATTAGCTAACCTTGAAGTACTTTTGACAAAGAAAACAC
GAAGATAATCCAGCTAAGGTCTCACGTGTTCATAAAATCATGACCTCCAG
CTGGCCTTGGAGTATTTTTTGTCAAGACGGCCGAGGGGCGCATAAGAAGG
GAATGGTAAGTATTACACAGTAGTGTCCATCCGACCCAGTTTCTCTACAT
TTCAAACACGGAATAGATTCCTGCAAATGACTCGTGTTACTGGTACTGGT
TCTGGTAACACGGAATCGATTCCAGCAAACGATTCATATACTGGCACTCA
TACTCATTCTGGTTCTGGCACTGGTTCTGGTACTGATACTCCTTCTGGTT
CTGACACTGGCTCTCGTACTGGTACTGGTACTGTAGTGCAACCCGCTCGA
GATCTTCACTGCGGGAGATGTCATACATACTTACGAATCATAACTAAGCA
CATACATATATATATATATTTATATCGCTAGGCCGCTTTTTACACGTTTT
GAGCTGCTTTTGGGAGCGGCTTGAGAATGTCCGTTTCCTCGTCTTGGAAC
CGTTAGACCTGCTACTAAAAAAATCCAGCCAATCAGAATGCGCTCTTTTG
TCCGATGGATTTTCACGTTGGAGAAAATTAAATCCCCTCAAAAATAGTTT
ATAAGCAAACTGTATTGGCGGGATAGAGTCAGAACCAACAAAGATTCATC
CTATGGTAGGGGGGTCAATTGATCAACGAAGGCCGCTTCGCAAAAGCGAT
GCATAAATAACGCGAATCAAAGCCATCACTATGGTTCCACAGTGTACGGG
TTGAAATGGGATCTCTTTTTTAAGAGAAGGCAACAGAGGCGATTCGTTTT
TTGACAACTGCCCTATCCCCTTCTCAAAGCGGTTCCTTCGTTAAACAAGG
CGGCTCAAATAGCGTTCCCCCCTGCCATAGGATGTCCAAAGGGGTCCAAA
AAGCTCCATACACGCAGCTCTTGGCACATATTCATAGCTGCAGCAGCAGC
AACAGCAGCAGCAGCAGTAGCATACAACATATTGCGCCAAGCATGACCGA
GGGCGGGAGGCACACATAAGGCATATGACACCTATCCACGAGCTGCTCCT
GTACCTTAATCACCTTTTCTTTGGCTGTAGTGCTGGCCACCCTTGCGTTT
TGAAAATGTTCCCGAGAGCTTGGTTTTTGGTTTTATGACAGCACACAGCA
TACCCCCTGACTACTGTCCTGTTGTACTGACTGACTGACTGACTGGCTGA
CTGCTGCATTTTTTATCTCTCTGTAGCGTCTACAAGGCGGGTTTGAAGCA
GCTGCAATCGCCATTTCAAAGGCGCCCCATTCAGCCACAGCAGTGATCTT
ATCGTGTTCTGTACTCTGCAGTGCAGCCTTAAGTTGTTTCTCTGATCCTC
GTTTATGTTATGCACACCAAAATTGTGTATTGTCTAAACAACTTGAAATT
AGAGAAAGCCAAAAAACGCTGGAACTGTGGATATCCCCCAATCGAGACAA
CCCATCTTGTTGCCAGCTCGACGGATTCTAGTGAGGCTTGGTGCGCTGTG
TTGGGCGAAACCAGAGTTACAACACCTGGTGGGAGGTTGTTGAGTAGGGT
TCACAATGCGCCTACAAAGAGGGTATGGTTTTCCTCTGTAACGTTTCGAG
GAATTATCCACCTAAAAGGCTATGTACGCCGTCCTGTAGGATATCGTATA
CGCGCATGTGTGTCCTCAGCATCTGTCCAGACAACGGCCCCTGCACGAAG
AATAATTGCAATTTCATTTTGATACATTACTAATCAAGTACAACTTGTCT
GTCATAGGCGTTGGCTATGTGCACGTTTTTCCGGGGCATGATTCGGAACC
TCTGGAAGATCTAGCGGAGAAGTCCTTTTGTTTTTTTTTGTTAGCCAATG
CTAACCGGACGGTATTTTCGAACCCTGCACTGTGTACCTCTATTAAGAGG
AATGTACGCAAATTCATGCAATTAAAAGTGTTCGAATACATTTTGATTCA
AGTTTTTTTCGAGCGGCTTTTCGAAGCTGTCCCTCGTAAAGAAGTGGATC
GAACCCCCCCCCGCCCTTCCCCCTAAGGTAGCCCGACTCGAGATATTGTA
CTTATGAATCATGACCAACTTATATATATATATATATATATATATAAAAC
TCGTAATCATGGATGAGGACCACATGATCATGGCCAAGTTTCGCTGAAAG
AGTTGAACCCTTTCTAAGAATCGAACTTCGTAGCGTTCAAAAATATACAA
ATATGAACGACCAGTTAGTAGACAGCTGGTTACTTGTAAATAGAGTAGAT
CATTTCAGGTCTCAGGTACCAAAGAGGGAGACTTTTTTTTTTGCTGTTAT
GAGAGCTTTTATCTCAGATTTAGTGTAGAGCGAGAACGGGCAAACATCGG
CTTCTTTTGTAATGGCCAAAAAATAGTCAGGCAGCACTTCACAGGTGATT
AGGAGACCGGAAGTCCCTGAAATATTAATAATCGGATAACTAGTGAAACC
GGGTATTAGCTGTTCTTGCCGCAGCGCCTTGGTTTGTTCGGTTCTCGGAT
AAGTAATCCGGCAGCTTGAAGATGCTCAGTATATCTCTATTTGTTTTTAC
GGTTAATCGTTGTTGTGTTTTCTACAGGAGTACCGTAATTTATGCCACCT
GCTTGTACATTTGACTCCCTCTTCATTCTGTGGTACTTTTTAAAAACCGT
GTTATTTTCATAGTAGTGTCGATTCCGTCCTGCTGTTGTTGAAGCTGTGT
CCGTGGCGATTGACTTTTGTGGTGATATCGTTATGTAGTATTAATAGTTC
GTGATGGGAGGATCACGCTCTAGCATGTTGTGTATTACTGGTTGTCTTGT
AACTGCTGCGTGTTGTTGCTATCACGTATCACGGTATCATGTATGTATGA
AGATTTTTTTAGGTCTCAAACATCTTAGGCTAACAGATCAACATCAATCC
AATTCGTTTTCTTACCTGCACTTAGTAGTAGCTTGCCCCCCCCCCCCCCC
CACACACACCGTGTTTACGGTATAACCGTGTTTTATTTGGTTTTGTCAGT
ACTACAGTATAATATTTTGCCCCGGCGGTCAGTGGCTGCGCGGCCGATTG
CATTGTGTGGATCCCTCAGACCCGCGGTCAGTGACCGCAGAAATGGATAA
TAACGCAGTAATATGCAGATTACAGAGCTGAAGTAAATGGATAATAGCGA
AGATACATGCGGCAAGGGTCTTCTATAGGATGACCGCTTTCGTCTGAGAG
CAGGGCCACTACCGAATACCCCCCCCTTGCCACCCCCACCCCTTAAAAGC
CATGAGTACCCCCCCCGTCCTCCGTTTTTGAGGCCTAACCCCTTTTGGGG
GTGCAACTTGTAAAACAAATAGCCGAAAATGTTCTCTTCAGCCGAAGGCT
ACGTATATGCGGACGAATCAACCACTGCTCTTCATGGAGGGAGCGAGTCA
GCCTACATATAATCGCATCTATCGCCATATTTTGGCATACAAACCATTTT
CCAGTATAAAATACCATACTGTGTTGAAAAGGAATACTCCAAAACCTAGA
TTTTAGATATCAGTGCCTTCACAGTTAAAAACGTGTGTGGCGCGGCCGAG
GCGCCTGTGTCATTAGAAAACACGAGCCTCGTCGGTTCTTTCAGGCTAAC
CTTGTAATTATGATTCTATGAGGCATTGGTGTGTGTTATATTTCAAACTG
TATATCGAAAATATACCAAAAGGAGAACGTTCAATTCGGACTGATAAAAA
CGATGTCCTCATTTTTTTAACTCTTATTTTTGTCTTTCAAATTTCAGATG
TACGTTTGTTTTGTGTGCGTTTTATTTTTTTTCTTACTTTTCCCCCCCGG
AAATTATAGCAATCAAAGTACGATTTTTCCGAAACAAAATCAGTTTATTA
CCATCCACATTTTTCGTACTGATAACTAAAAAACAGGGAAATAAGGCAAA
GTTTATTAGCTGTGCATGTTTTTTAGTCGAAATCACTCCCCAAGTCTCGA
AAATCGTTTTCCAACCATGGGAACGAAACCTGGACAAAGGTGAAACCGCT
CGTGATGGAGTGTATCAGCCCCCAAACAAATACGAATACTTGGTGCGTTC
GCCTCGAAAACTAAAGGTATTCGCCCAAGTTTCAGAGTGAGCTCGCGTAT
TCTATATGCCCCGGACCATCCACGACTGCTAATAATACTCCGATGTACTT
TATTCTATGTGTCCGCTCATTCTGAAACTCGGGCGAATACTTGTAAATTT
TCGTGGCGAAATCACCAAGTATTCGTATTTGTCCGGGGGACAATGAGCTG
CTGCTCGTCACAGACCCCCTCTGGATTCCAGCTCATCCACACCATCATCT
TGTTGCGAGAGGACTTCCTTTTTAAAAATTGTTTATTCCGTGAGAGATAC
AAACATTGGCTATGACAAGGAAATCATTTTGTAATGAGAGGTGGGTGTAG
GTGGACCGGGGGTCCGGGACGAGGACCTAGCTCACTATTGGCTGTATGCG
CTACCAAATCGAAATTTGAAAAAGGAATTCATTTTGCGCAAACACCTGTA
AAATGAACCATTTTGAAGGATGGAGCCCTTTTTGCATTATTTTTTCATTT
CCAAGGCTTTTTTTGTGGCGTGAACAATTTTGCGAACCCCCTTCGAGGAT
GGTCTTGTGACAATTGTTAGTTTGCCATCCGGTTTGCGGACGGTTACACA
CGTACGTTTTTTTTTCTTTTTCTTTTTTTCCAGGTCGTGGTCGGTCATGG
GTGAGAACTTGTACATCATGTGGAAAACAATTGCTGGCCACGTGACGATT
TGAACCCCCGGATCGCAATGCGAATGCTTGGATAAAACCACCCGCCTGAA
GGTTCAGCATGTGCAGGCACATAAAATGAAGTGTCTACTCCGCGTGTATT
CGTTTTCACCACATTTCGCCGCAGTCGTGGATGGTTCTTCCAGAGCACAT
AAAGAAGTGTGTAAAGTAAACGTTCATACGACGACTTTTCCTGTCATGTG
GGAAATTTCCGGTCATGGGGGAATGAAATTTTTCCAGTCGTATCAGAAAT
TTTCCGTTGGTCTGAGAGAGACTTTCCGGTCATGCAAAAAGGTGTGTGAT
TATTCGTTTTTTTCCAACTTTTTATCCCTGCTCATTGGCTGGCTGGCTGG
CTGCCTGTGCCCCGCCCTCCCCCTCCTATATTTAGGTGCACTACATGACC
CTCCAGAGCAACATTCGCCAAGACGGCGAGTTCGAATGGCAAGTGACCAA
CATCAACGATGTCATCTTGCCTACCTTCGAGTACTACTTCTCGCGGTTCG
GTCACTAGCATTAGCTGCTTTTTTGCGAGGGGAGGGGGGAGAGTCTGAAG
CAGCAGCGGAGCCGCGCGAAGACATGAAATCAACGGGGGAATTATCTATG
TGCGGGAGATTTCTGCGGGAAATTGTCTGTGGCGGGGGAATCCAAACAGA
TGCATTATTGACGGGTGGTGGCGAGGTGGACTGCAAGGTAGAGGTGAAAC
GTCGTGGAATCAATTTCCCTGAGAGTTCAATTTTTCAGCCGAGAATCACG
TTATCGGCGGGGAGATTATTATTCTCGGATAGATTTCTTCGTAAGGTGGT
GGGTGAGTCCAGGAGGAGCTGCCACTGTCGCGGACGTGGAACCTGTGGCA
TGCAACGCCGCACATCCCAAACATAAACTTTTGCGGCATATTTCCATGTC
TTATATATGTATGTATGTATGTATATATATATGTCGTAGTCGGGGATAAT
TTTCCTGGAGGATAGAGAAGAGTTTGGCCGAGAGTGATAATTTTGGGAGG
AGTCATAGTTGTTTTTGGAATTTTTGTTGATGAAAAATACAAACAGCGGC
AACTATTGATGTTGATTTGTGGGTTTCGCAATATGCTCGTCGTTTTTATC
ATCAGGTAATTCAAAGATTCCAATATACGAACATGGTCATGTCTGCGTAG
TATCCGATCTGCTCGGAGAACAGCACGGGTTTTCAGCGGAGTGATTCTTC
AGGGATACAAGTAGTGCAGACAGCATTTGGGTGCCTGCTGGCTTAACAGC
ATTCAGGTAGCTTCTGGTATCTGATGGAAGGAAAATATCAGAATTAATCA
ACAGGTGATACTCGGGATTGGGGATCAACTTTCTCGTTGGGATTGAAGTT
CCGTTGAATTTGAATGGAATGCTTCGAAAGTGGTGCTAGCGAAAGGTACT
TTCCGAGGAGAGTTCATGTACATCTATCTCACTGCTATTTATTCTGCACA
ATAAATCTGGAAACCTTTTCATTCGTCGATTCCCACTGCAAGTGCGCAAG
GAAACTGTCTTTCGCTAACACCATTTTCGAAGTATTCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig7496:180..8517+ >mRNA_H-paniculata_contig7496.15474.1 ID=mRNA_H-paniculata_contig7496.15474.1|Name=mRNA_H-paniculata_contig7496.15474.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig7496:180..8517+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGTGCCGACGAAGTCAAGTACCATCTCACGATGGGTTTGATGAGTGC CGACGAAGTCAAGTACCATCTCACGATGGGTTTGCTAGGTCCCGAGGGTA GCGTGATTAACGAGCTCGAAGGACGGGCTCCTCAGAAGATCATCGCCGAC GTTTGCCTGACCTGCGACGAGGACTTTTTGTTAACAGACGAGAACGGTAA TGTTGTACATGCAACTGGATCCGACGAGCCAAAGCTAGGTCCCGAGGGTA GCGTGATTAACGAGCTCGAAGGACGGGCTCCTCAGAAGATCATCGCCGAC GTTTGCCTGACCTGCGACGAGGACTTTTTGTTAACAGACGAGAACGGTAA TGTTGTACATGCAACTGGATCCGACGAGCCAAAGGTGCACTACATGACCC TCCAGAGCAACATTCGCCAAGACGGCGAGTTCGAATGGCAAGTGACCAAC ATCAACGATGTCATCTTGCCTACCTTCGAGTACTACTTCTCGCGGTTCGG TCACTAGGTGCACTACATGACCCTCCAGAGCAACATTCGCCAAGACGGCG AGTTCGAATGGCAAGTGACCAACATCAACGATGTCATCTTGCCTACCTTC GAGTACTACTTCTCGCGGTTCGGTCACTAG back to top
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