mRNA_H-paniculata_contig7489.15470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7489.15470.1
Unique NamemRNA_H-paniculata_contig7489.15470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: A0A6H5JMI1_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI1_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 5.810e-83
Identity = 128/189 (67.72%), Postives = 150/189 (79.37%), Query Frame = 1 
Query:    1 MAFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGEPKLCDVTRFKDELEV--DKDGRVTLVKIRSTMDCLKKEVEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQEHGWFGQPEICTQIVRGKKSCPETVYASELVKNGVYF 561
            MAFFGLTALGPQNSF VSLLDFSYLDVFT  D EKAF IVD E+RG++  DQ++ FLT LYHG+PK CD+ RF ++      ++ RVTL  I+STM  L+KEVEEE+  AKW +GSGSD +SNQ FRE VRRHE+I +GPR+RYA TVTAVQEHGW  Q +I  Q+V GKKSC ETVYASELVK+GVYF
Sbjct:    1 MAFFGLTALGPQNSFQVSLLDFSYLDVFTALDIEKAFNIVDQEKRGHIHSDQVEAFLTELYHGKPKACDLARFMEKKSSFEGQENRVTLDDIQSTMTQLRKEVEEETNQAKWHKGSGSDLSSNQNFREKVRRHEYIARGPRERYARTVTAVQEHGWQDQLDINKQMVHGKKSCAETVYASELVKSGVYF 189
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: A0A7S2V2Y5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Y5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.340e-39
Identity = 79/188 (42.02%), Postives = 121/188 (64.36%), Query Frame = 1 
Query:    1 MAFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGEPKLCDVTRFKDELEVDKDGRVTLVKIRSTMDCLKKEVEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQEHGWFGQPEICTQIVR-GKKSCPETVYASELVKNGVYF 561
            MAFFGLT+LGPQ+SF  SLLD   L++F+  D E AF  VD +  G++E ++I+  L  +Y G+    +V  F  + + ++DG+++  +  ST+  L++EVEE+ K  + + G  S F+SN  +RE + +H  +  GP D+Y   +TA QE+GW  Q +   Q  R GKKSC ET+YA+ELVK+G+Y+
Sbjct:    1 MAFFGLTSLGPQDSFATSLLDTINLNIFSDEDFETAFKKVDRDGSGFIERNEIEALLREVYRGDCPRNEVEMFMAKFDTNQDGKISWEEFVSTLCELRQEVEEQEKAKEQRVGPASQFSSNLEYRENMHKHTRLNTGPTDKYNQPMTASQEYGW--QHKEVDQAPRAGKKSCEETLYAAELVKSGMYY 186
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: D8LF25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF25_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 3.900e-33
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 1 
Query:    1 MAFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGEPKLCDVTRF---KDELEVDKDGRVTLVKIRSTMDCLKKEV 303
            MAFFGLTALGPQNSF V+LLDFSYLDVFT  D EKAF IVD ++RGY+  DQ++ FLT LYHG+P  CD+ RF   K  LE  ++ RVTL  I+STM  L+KE 
Sbjct:    1 MAFFGLTALGPQNSFQVALLDFSYLDVFTALDMEKAFNIVDHQKRGYIHSDQVEAFLTELYHGKPIACDLARFMEKKKSLE-GQENRVTLDDIQSTMAQLRKEA 103
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: A0A836CBM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBM4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.740e-25
Identity = 69/192 (35.94%), Postives = 98/192 (51.04%), Query Frame = 1 
Query:    1 MAFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGEPKLCDVTRFKDELEVDKDG---RVTLVKIRSTMDCLKKEVEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQEHGWFGQP--EICTQIVRGKKSCPETVYASELVKNGVYF 561
            MAFFGLTALGPQN+F  SL   S L +F+  D   AF  V VE  G L  D +   L ALY G   + D  RF    E         +   +I   +  L+ ++ +   +  W+  +     SN+ +R  VRRH  +   P+++YA  + A Q+ GW  +P  E        KKSC ET +A+E+VK+G+YF
Sbjct:    1 MAFFGLTALGPQNTFACSLKGASDLQIFSDEDWRLAFEAVAVE--GALRRDDVTALLEALYRGPAPVDDAARFAKAAEAALGSGWDALACAQILRAVQQLRADMAQLQADEAWRARASCGTTSNEEYRNRVRRHCGLHLAPQEQYAVPLKAAQDLGWQQRPPGEGAAAGAHSKKSCEETKFAAEMVKSGMYF 190
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: A0A7S4DF25_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DF25_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.420e-22
Identity = 63/192 (32.81%), Postives = 105/192 (54.69%), Query Frame = 1 
Query:    4 AFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGE-PKLCDVTRFKDELEVDKDGRVTLVKIRSTMDCLKKEVEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQEHGW-----FGQPEICTQIVRGKKSCPETVYASELVKNGVYF 561
            +FFGL ALGP + F+ +LL    +  FT  + EKAF  +D +  GY+ +D++   LT+LY  + P   +V  F    + +KDG++T  + ++ +  LK++V +E+K            NS ++   +  +H    + P+  YAT +T  QE GW       + E   Q+   K SC ETV+ASE++K+G+Y+
Sbjct:   25 SFFGLVALGPNDPFSHNLLKNMNMSKFTEEEFEKAFKSIDKDGNGYISIDEVRYLLTSLYSMKSPPEEEVKMFVQLFDANKDGKITFEEFKNAVPKLKEKVRKETK-----MNHAKTTNSAKSLHRVRNKHVRDCRAPQQLYATPMTTAQEVGWQTASKAEKNENDPQMP--KSSCDETVFASEMIKSGIYY 209
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: A0A7S2TRH2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TRH2_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 5.250e-22
Identity = 61/194 (31.44%), Postives = 106/194 (54.64%), Query Frame = 1 
Query:    4 AFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGE-PKLCDVTRFKDELEVDKDGRVTLVKIRSTMDCLKKEVEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQEHGWFGQPEICTQIVRGKK-------SCPETVYASELVKNGVYF 561
            +FFGL ALGP + F+ +LL    +  FT  + EKAF  +D +  GY+ +D++   LT+LY  + P   +V  F    + +KDG++T  + +  +  LK +V++E+K         +  NS ++   +  +H+   +GP+  YA  +T  QE GW    +  ++  + K        SC ETV+ASE++K+G+Y+
Sbjct:    8 SFFGLVALGPNDPFSHNLLKNMNMSKFTEEEFEKAFKSIDKDGNGYISIDEVRYLLTSLYSMKNPPEEEVKMFVKFFDKNKDGKITYEEFKEAVPKLKGKVQKETKV-----NHATTTNSVESLYRVRNKHKRNCRGPQQLYAAPMTTAQEVGW----QTASKAEKNKNDPHMPKNSCEETVFASEMIKSGIYY 192
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: A0A7S3GWS7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWS7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.230e-13
Identity = 53/190 (27.89%), Postives = 90/190 (47.37%), Query Frame = 1 
Query:    1 MAFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGEPKLCDVTRFKDELE---VDKDGRVTLVKIRSTMDCLKKEVEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQEHGWFGQPEICTQIVRGKKSCPETVYASELVKNGVYF 561
            MAFFGLTALGPQN+F V+   F Y+ VF   D + A+  V+     ++   ++     AL+HG     +     +  E    +    ++L      M  L++E +E+S+  + +     +FNS       +R++  +    + +    +T  QE+GW  Q        RG      T +A+EL+KNG+Y+
Sbjct:    3 MAFFGLTALGPQNAFEVNSTTFRYIQVFDEQDFKDAWIKVNGPDALHVHRPRLPLVFKALFHGPVPANEQGPISEAFENGVFETPETISLDSYLKIMVRLREEADEQSRAREGRPNPNCEFNSTSEMSLAIRKNAAMKHELQTKLTAPLTGTQEYGWSKQDLKAPTAGRGGSDI--TKFAAELIKNGIYY 190
[Close]
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Match: A0A482S0M9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0M9_9ARCH)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-7
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = 1 
Query:    1 MAFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLELDQIDPFLTALYHGEPKLCDVTRFKDELEV--DKDGRVTLVKIRSTMDCLKKEVEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQE 453
            MAFFGLTALGPQN+F  + +   YL +F   D   A+   + +R  +   ++I   + AL+HG     D+    +  E   D  G V        +  L+K+ E+       +     +F S+Q+FRE +R++  I +  +++ +  +TA  E
Sbjct:    1 MAFFGLTALGPQNAFAANAITRRYLQIFDEQDFHDAWKKANGDRT-FCAKNKIPAVMEALFHGPVPDNDMNPVVEAFESVDDGSGMVAFATFMRIIAHLQKDAEKAEHVHDGKPRPECEFISSQSFRESLRKNAAIKQNFQNKLSAPLTATME 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7489.15470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JMI1_9PHAE5.810e-8367.72EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2V2Y5_9STRA7.340e-3942.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LF25_ECTSI3.900e-3363.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBM4_9STRA3.740e-2535.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DF25_9EUKA1.420e-2232.81Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S2TRH2_9EUKA5.250e-2231.44Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3GWS7_9STRA1.230e-1327.89Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482S0M9_9ARCH1.400e-728.76Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7489contigH-paniculata_contig7489:942..5442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog227086.JGI_V11_86502
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0YM@1,2S8BS@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_006460.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size564
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7489.15470.1prot_H-paniculata_contig7489.15470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7489 942..5442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.871168-CDS-H-paniculata_contig7489:941..10971622930918.871168-CDS-H-paniculata_contig7489:941..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 942..1097 +
1691481510.2848084-CDS-H-paniculata_contig7489:941..10971691481510.2848084-CDS-H-paniculata_contig7489:941..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 942..1097 +
1622930918.8849854-CDS-H-paniculata_contig7489:1299..14431622930918.8849854-CDS-H-paniculata_contig7489:1299..1443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 1300..1443 +
1691481510.2962-CDS-H-paniculata_contig7489:1299..14431691481510.2962-CDS-H-paniculata_contig7489:1299..1443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 1300..1443 +
1622930918.9027085-CDS-H-paniculata_contig7489:1756..18371622930918.9027085-CDS-H-paniculata_contig7489:1756..1837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 1757..1837 +
1691481510.3082392-CDS-H-paniculata_contig7489:1756..18371691481510.3082392-CDS-H-paniculata_contig7489:1756..1837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 1757..1837 +
1622930918.917568-CDS-H-paniculata_contig7489:4344..44521622930918.917568-CDS-H-paniculata_contig7489:4344..4452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 4345..4452 +
1691481510.3182786-CDS-H-paniculata_contig7489:4344..44521691481510.3182786-CDS-H-paniculata_contig7489:4344..4452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 4345..4452 +
1622930918.9339216-CDS-H-paniculata_contig7489:5367..54421622930918.9339216-CDS-H-paniculata_contig7489:5367..5442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 5368..5442 +
1691481510.3276367-CDS-H-paniculata_contig7489:5367..54421691481510.3276367-CDS-H-paniculata_contig7489:5367..5442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7489 5368..5442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7489.15470.1

>prot_H-paniculata_contig7489.15470.1 ID=prot_H-paniculata_contig7489.15470.1|Name=mRNA_H-paniculata_contig7489.15470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MAFFGLTALGPQNSFNVSLLDFSYLDVFTPADQEKAFGIVDVERRGYLEL
DQIDPFLTALYHGEPKLCDVTRFKDELEVDKDGRVTLVKIRSTMDCLKKE
VEEESKNAKWQRGSGSDFNSNQTFREMVRRHEFIPKGPRDRYATTVTAVQ
EHGWFGQPEICTQIVRGKKSCPETVYASELVKNGVYF*
back to top

mRNA from alignment at H-paniculata_contig7489:942..5442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7489.15470.1 ID=mRNA_H-paniculata_contig7489.15470.1|Name=mRNA_H-paniculata_contig7489.15470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4501bp|location=Sequence derived from alignment at H-paniculata_contig7489:942..5442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCTTTGGCCTGACCGCGCTAGGCCCACAGAACAGCTTCAATGT
GTCCCTGTTAGACTTTAGCTACTTGGATGTGTTCACGCCCGCTGACCAAG
AAAAAGCTTTTGGCATCGTGGATGTCGAGAGAAGAGGGTATTTGGAGCTT
GACCAGGTCCGTGCGTTGCTTTCGCCTGCCATTTGGGACATTGCGTCCGT
GCAGCAATACGTGAGAGTGCCCATATAAGGCGCACTGAAAGTGTGGACGT
CGAGAACGTTGTTGCTGGTGCCAATGTCCAGGGTGAATGTATTTCTCCTG
CAGATAGCGATACATTCGTATGATTGCCGTGTAATCATCTCGCCGCCGAA
CCACCCAGATCGATCCGTTCTTGACGGCATTGTACCATGGAGAACCAAAA
CTTTGCGACGTGACTCGGTTTAAGGATGAGCTGGAGGTGGACAAAGATGG
CCGCGTTACCCTGGTTAAGATCCGATCCACAATGGACTGTCTGAAAAAGG
AGGTGGGGGTTGAGTAATTACTCCGCACTCCGAGCGCTCCCGATCCGGAG
TAGAGCTATACTACAGCCGTGTATATTGCGTGAGCGCCAGTTTATCTTCC
TTTCCCACCGGCCAAAGTGTAGTAGCGTCAACCGAGGCTGGTCCCTTCTT
GCACGTGTGTAATCACGCATCAATTTAGCGCGTTCGTTAGTTTACGAGCT
ACGATAGTAAATAGGGTCTTTTTCGGGGTTTGGGATCTCTGCAGTGGTGC
TGCAGTTTCTTTCACGAGGTGTCGGCTCCACTGGTACAACGCCATGCATC
ATGTCTACTCTGCAGGTTGAGGAGGAATCCAAAAATGCTAAGTGGCAACG
TGGTTCGGGATCTGACTTCAACTCCAACCAAACCTTCCGGGAGATGGTAA
GTACTCTCCGACGGTAACAGACACGGTATGATAGGCAGCGTTTTTCACTA
ACTTGGTGGTATTCACTACCTCACCGTTCTTCATTATGATTAATATTTTC
CGTGTTTTCCAGAGTACCCACCACTTCTAATGGTATGGACTTCTGCCTAG
TGCCCATGAACGGCGATAGACGATGCCATGGGTAGCTTAGACGGAGAAAA
TTTCATTAAGAGTACGTCATTGCCCATGGAAATGCTATCGGCAGCCAAGG
ATGCTCATAGATAATGGCAGATCAAGACGTTCACGGGGAACTTCTACCGT
CCATGGGTGGGTGCTTATGAGTTCCATTTCTGTGCATGCTTGCAACATGG
ACACCCCTTGATTCTCAATCCCTCTAGGAGCCCGCGGTTCTTAGAGAAAA
AGCCGGTGGTATGCATTTTCTCTGCTCCTTAACTGCATCGTTATGGTTAT
TTATTAGTATCTTTCTCACAATTAAGATACAAAAAATCCGCATATCATTC
GAAAGTCCACAACTTCGTCTTGCACATATGTATCTCAAAAATAATTCTCA
AAACAAAATAGTTGAGAGAATGATAGACGATACTTGAAGATTAAATGACA
AAATTGATCACCCTGTTTATCAGACGCTAACCGAATGGTGTTATTTTGAT
CTTTCTAAATAGTTGTGAAAACGGTGTCTGATCTTTTTTTGAGAAATAGC
AAAATCGATCAAAACGGCCAAAAATGATGTTTAATCTGCGATATCGTCTC
AAGATCTCAGATGAGCCCTGAATCAAAACAACGTAAAATAATTGTCTGTT
CTAACGTGGTTCGAACTAGAACTCGGAAAGTACTTGGGGTGGAGCATTTC
ACGTGAAGTTTTTGGCTCATTTTTGAATGACAGCTCTGCGTCCTCGAGGT
GTCTACCACCTCCACGTCCCTCACACTGCCCGCGGGCCAAGCACCATCAC
CCACATGGCCACCCCAAATAGTCCGTCGTCGCTCCCGGTGACCCCACCGG
CTCGGGGGAAACATGCCGAACTGAGCGAAGAAGGCCGGAACGCGTTGGCC
TTGCGTTACCCTTTGGTCCTCCGTCCCGGTAAACAGCGGCTTCCGAAAGG
CGCTGGAACGGAGTTGGCACGCGAGTTTGGAGTGAGTATCAGCTACCCGA
GAAAGGTGTGGTCACGCATGCAGGAGTAACTGAAGAACACGTTACCTTGA
AATCAGCGGCGAGAGCCAGCGGGCCGTCCGACGTCACGCCAATGAAACGC
GAGAAAATCCCACAGATCAACGCCGGAAATCCCACGTTGATCCTTGACAT
CGCACGGGTAAAGGCACGCCGCGCAAGCTAAACCAAACTTAGAGGGAGGG
TGGATGGAGCATCGAGCTCGTAACGCAGCTTGTGCAGTCTCCAGATCTCA
ACATCAACGATTTGGGATTCTTCGCATCCTTGTAAAGCAGGGTGTGGAGG
GAGCGAGCACTACAGTACGACGATAGACAACCTTGTAAAGGGCGTTGCGG
TCATGTACGACGAGTACAACACGGGTACTTTAGAGAGGGTATTGCGCCTC
TTCAAAACGTACGATCAAGTGTTCAGAACGCTGGTGGGGGGACGATTTCA
TTGTTGAGCACATCGGGACGAGAAAAAGACAGCGTAACGAGGTTCGGGAG
CAATTGGTCGCGATAGACAGCGATGCTTCCAGCGCGGTGCTGGATTAGTG
AATTGATGGAGAGGACGGGAGTTAATACTAGTGAATTCGGGGTAAGAAAA
GCCAAGGAATCCAACGTAAAAAAAGGTTGTTTTCATGGGAGGTCACGTTG
AGACGATATCGCCGATTAGCCATCATTTTTGGCAATTTTTGATTGATTTT
GCTGTTTCTCAAAATATGGCATTTTTCAAGAAACATCCAAAACATCTCAG
ATGCCATTCTCTCAACTATTTAGTACTGAGATTTATTTGGGTTTTCGAAT
GATATAATCGGGTTATTTTTAATCTCAATTTGGCAAAGATACTAACAAAT
AACCATGATAATACAGACTTCTGGGACAGAGGAATTATTTATGTACTGTT
TCTCGCTGCAGTCCGGAAATTCGGTTATGATATTTTTCTGCGAAATATAT
GCGTGGAATCAGTGCTTTGTGCACCTGCCGCGTCTTCAGACAGTTCACGT
GCATGATATTCGGTCCAACCGTTTCGACCTGAGACATGCTGTTCGTCGAT
ATTGCTTGCGAGCGCACACGCGCGGTGTCACGCGGTGAGCTTGATAGCCT
CCTCGAGGGTATTGATTTTTCGCGGATTTTTGGCACGCATAGGTAATTCG
GAATGATTTTCCTGCGTGTATTTGTAGTTAACGCAAAATCACATGCCTCA
CGTATATCGCCTGTCAATGATAAATGAAGATAGCTCATTAGCAGGTTCAC
CTCGTTGTGCTCAAGACTGCGTAATTGGTGGGTAGGTTGGCAGTGCCCAC
GACTCTGACGATGCCGTCTATGTAACTTTCTACGGGCGCACATACCTTGT
CAGGTTAGGCGACACGAGTTTATCCCCAAAGGACCACGCGACCGTTACGC
TACAACGGTAACGGCGGTGCAGGAACACGGGTGGTTTGGTCAGCCAGAGA
TTTGCACACAGGTTATGTTCCAATAATATACAGAGAAGGGTGAACATTAT
AGAGTAGAACATAGTTGCACAACAATCGTTCGTGCTTTAACAATGTTCTA
CCTTATGTCATCTGCCAGGATATGAGATAGGATCACCCTACGGTAGGGGG
GGGGTCAATAGTTCGAAGAACGCGACTTCGTAAAAAGGTGGTGCAAAAAT
AACGTGCATCAAAACCATGTCAATGGCATGTGTTTTTGCATCCCTAAAGA
TGCACAGTTCTGGAGTTGAATAGGATTTCTGTTCAAGGGGGGAGGGCAAT
AAATGTAAGACAAATACAATGCCTAATCATCTTCTCAAAGTGGCTCCCTC
GTTCAACAGAACGGCTCAAATACCCCCCCTCACCATAGTATGACTCCCAT
ATCAATTGCATATGTTTGTGCACCCCTTAAGGTGCACAGTCCACGAATTG
AAATGGGATTTCTGTTTTAGGGAGAGAAACACATAAATCCCGCCCCAGCA
AATGCCCAATCCTCTTCTCGAAGGGGCTCCTTCGTTAAAGAAAACGACTC
AAACACTCACTCCTCCTACCGTAGGAGGACTCGATACATGTATTGTAGCT
GTTGCTACCTTTGGCACCTGAAATATATATATATCCAGACACTCTTAATT
GCTAGGCGTCATGTATGCCATCATGGCGGAAGTTACTCTCTTTATTAGCG
TACTGTCAAGATGGATGATTCTAATGTAGAAGAGGATTCCTCTTCATCGT
GCTTGCTACATGAAGAGGTCAATTGATTTTTTCGTTCGAAGGACGATTTT
TTCTTGCTGATCTAAGTCCACTAATCCGTTGAATCTGTATTTTCCCCTTG
AGGCTCAGCGATACCTCATTGGAACCGTTGTGATGTTGTTCTGTTCCTCT
GTGTTTCGTGCAAATGTTTTTGGCAGATTGTACGCGGGAAAAAGAGCTGC
CCTGAGACAGTCTATGCCTCAGAGTTAGTGAAAAATGGAGTGTACTTTTA
G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7489:942..5442+

>mRNA_H-paniculata_contig7489.15470.1 ID=mRNA_H-paniculata_contig7489.15470.1|Name=mRNA_H-paniculata_contig7489.15470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at H-paniculata_contig7489:942..5442+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCTTTGGCCTGACCGCGCTAGGCCCACAGAACAGCTTCAATGT
GTCCCTGTTAGACTTTAGCTACTTGGATGTGTTCACGCCCGCTGACCAAG
AAAAAGCTTTTGGCATCGTGGATGTCGAGAGAAGAGGGTATTTGGAGCTT
GACCAGATGGCTTTCTTTGGCCTGACCGCGCTAGGCCCACAGAACAGCTT
CAATGTGTCCCTGTTAGACTTTAGCTACTTGGATGTGTTCACGCCCGCTG
ACCAAGAAAAAGCTTTTGGCATCGTGGATGTCGAGAGAAGAGGGTATTTG
GAGCTTGACCAGATCGATCCGTTCTTGACGGCATTGTACCATGGAGAACC
AAAACTTTGCGACGTGACTCGGTTTAAGGATGAGCTGGAGGTGGACAAAG
ATGGCCGCGTTACCCTGGTTAAGATCCGATCCACAATGGACTGTCTGAAA
AAGGAGATCGATCCGTTCTTGACGGCATTGTACCATGGAGAACCAAAACT
TTGCGACGTGACTCGGTTTAAGGATGAGCTGGAGGTGGACAAAGATGGCC
GCGTTACCCTGGTTAAGATCCGATCCACAATGGACTGTCTGAAAAAGGAG
GTTGAGGAGGAATCCAAAAATGCTAAGTGGCAACGTGGTTCGGGATCTGA
CTTCAACTCCAACCAAACCTTCCGGGAGATGGTTGAGGAGGAATCCAAAA
ATGCTAAGTGGCAACGTGGTTCGGGATCTGACTTCAACTCCAACCAAACC
TTCCGGGAGATGGTTAGGCGACACGAGTTTATCCCCAAAGGACCACGCGA
CCGTTACGCTACAACGGTAACGGCGGTGCAGGAACACGGGTGGTTTGGTC
AGCCAGAGATTTGCACACAGGTTAGGCGACACGAGTTTATCCCCAAAGGA
CCACGCGACCGTTACGCTACAACGGTAACGGCGGTGCAGGAACACGGGTG
GTTTGGTCAGCCAGAGATTTGCACACAGATTGTACGCGGGAAAAAGAGCT
GCCCTGAGACAGTCTATGCCTCAGAGTTAGTGAAAAATGGAGTGTACTTT
TAGATTGTACGCGGGAAAAAGAGCTGCCCTGAGACAGTCTATGCCTCAGA
GTTAGTGAAAAATGGAGTGTACTTTTAG
back to top