prot_H-paniculata_contig7484.15467.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7484.15467.1
Unique Nameprot_H-paniculata_contig7484.15467.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length200
Homology
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BLAST of mRNA_H-paniculata_contig7484.15467.1 vs. uniprot
Match: A0A6H5JKT8_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT8_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.220e-64
Identity = 134/219 (61.19%), Postives = 148/219 (67.58%), Query Frame = 0 
Query:    1 MSWEKYAPMSETQLERLSHLKTACGGADAEAV-----RNVVPNQQLQVGKLGDSVKPAGIAALYKETY----GATG---------HLNHGDELGALARSRGSELREYAVTCQTFVAEIERAVHLLDTITQQQEQVTSKTQALHATCETLLSEQHRLEAQVKALSSPLRRFGALDELGPALGLPFHVLSSRPGSGGVGASSS------GAGRPGERIGEG 195
            MSWE+YAP SE QL RLS LKTACGG +AEAV               +  LGDS KP+GIAALYK++Y    G +G              DELG  AR RG+ELREYA TCQ FVA+IERAVHLLDTI QQQEQVTSKTQALHATCE+LLSEQH LEAQVKALS+PL+RF AL ELGPALGLPF   SS  G+GG G +        GAG  G R G G
Sbjct:    1 MSWEQYAPTSEAQLARLSRLKTACGGEEAEAVVXXXXXXXXXXPPATIPTLGDSAKPSGIAALYKDSYYGERGGSGTXXXXXXXXXXXXXDELGESARRRGAELREYARTCQAFVADIERAVHLLDTIAQQQEQVTSKTQALHATCESLLSEQHTLEAQVKALSAPLQRFRALQELGPALGLPFASQSSASGAGGEGGAPRRTSVGVGAGGDGARWGGG 219
[Close]
BLAST of mRNA_H-paniculata_contig7484.15467.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.590e-59
Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 0 
Query:    1 MSWEKYAPMSETQLERLSHLKTACGGADAEAV--RNVVPNQQ---LQVGKLGDSVKPAGIAALYKETY-------------GATGHLNHGDELGALARSRGSELREYAVTCQTFVAEIERAVHLLDTITQQQEQVTSKTQALHATCETLLSEQHRLEAQVKALSSPLRRFGALDELGPALGLPFHVLSSRPGSGG 177
            MSWE+YAP SE+QL RLS LKTACGG +AEA+  RN    Q+     +  LGDS KP+GIAALYK++Y                            AR RG+ELREYA TCQ FVA+IERAVHLLDTI QQQEQVTSKTQALHATCE+LLSEQH LEAQVKALS+PL+RFGAL ELGPALGLPF   SS  G+GG
Sbjct:    1 MSWEQYAPTSESQLARLSRLKTACGGEEAEAIVRRNQQXXQERAPATIPTLGDSAKPSGIAALYKDSYYGGXXXXXXXXXXXXXXXXXXXXXXXXXARRRGAELREYARTCQAFVADIERAVHLLDTIAQQQEQVTSKTQALHATCESLLSEQHTLEAQVKALSAPLQRFGALRELGPALGLPFASQSSAGGAGG 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7484.15467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKT8_9PHAE1.220e-6461.19Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
D7G064_ECTSI2.590e-5963.08Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007265Conserved oligomeric Golgi complex, subunit 3PFAMPF04136Sec34coord: 85..160
e-value: 1.4E-12
score: 47.7
IPR007265Conserved oligomeric Golgi complex, subunit 3PANTHERPTHR13302CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3coord: 76..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7484contigH-paniculata_contig7484:906..6488 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7484.15467.1mRNA_H-paniculata_contig7484.15467.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7484 906..6566 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7484.15467.1 ID=prot_H-paniculata_contig7484.15467.1|Name=mRNA_H-paniculata_contig7484.15467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
MSWEKYAPMSETQLERLSHLKTACGGADAEAVRNVVPNQQLQVGKLGDSV
KPAGIAALYKETYGATGHLNHGDELGALARSRGSELREYAVTCQTFVAEI
ERAVHLLDTITQQQEQVTSKTQALHATCETLLSEQHRLEAQVKALSSPLR
RFGALDELGPALGLPFHVLSSRPGSGGVGASSSGAGRPGERIGEGGPSLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007265COG_su3