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Homology
BLAST of mRNA_H-paniculata_contig7484.15467.1 vs. uniprot
Match: A0A6H5JKT8_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT8_9PHAE) HSP 1 Score: 218 bits (554), Expect = 2.270e-64 Identity = 134/219 (61.19%), Postives = 148/219 (67.58%), Query Frame = 1
Query: 79 MSWEKYAPMSETQLERLSHLKTACGGADAEAV-----RNVVPNQQLQVGKLGDSVKPAGIAALYKETY----GATG---------HLNHGDELGALARSRGSELREYAVTCQTFVAEIERAVHLLDTITQQQEQVTSKTQALHATCETLLSEQHRLEAQVKALSSPLRRFGALDELGPALGLPFHVLSSRPGSGGVGASSS------GAGRPGERIGEG 663
MSWE+YAP SE QL RLS LKTACGG +AEAV + LGDS KP+GIAALYK++Y G +G DELG AR RG+ELREYA TCQ FVA+IERAVHLLDTI QQQEQVTSKTQALHATCE+LLSEQH LEAQVKALS+PL+RF AL ELGPALGLPF SS G+GG G + GAG G R G G
Sbjct: 1 MSWEQYAPTSEAQLARLSRLKTACGGEEAEAVVXXXXXXXXXXPPATIPTLGDSAKPSGIAALYKDSYYGERGGSGTXXXXXXXXXXXXXDELGESARRRGAELREYARTCQAFVADIERAVHLLDTIAQQQEQVTSKTQALHATCESLLSEQHTLEAQVKALSAPLQRFRALQELGPALGLPFASQSSASGAGGEGGAPRRTSVGVGAGGDGARWGGG 219
BLAST of mRNA_H-paniculata_contig7484.15467.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI) HSP 1 Score: 209 bits (533), Expect = 4.890e-59 Identity = 123/195 (63.08%), Postives = 138/195 (70.77%), Query Frame = 1
Query: 79 MSWEKYAPMSETQLERLSHLKTACGGADAEAV--RNVVPNQQ---LQVGKLGDSVKPAGIAALYKETY-------------GATGHLNHGDELGALARSRGSELREYAVTCQTFVAEIERAVHLLDTITQQQEQVTSKTQALHATCETLLSEQHRLEAQVKALSSPLRRFGALDELGPALGLPFHVLSSRPGSGG 609
MSWE+YAP SE+QL RLS LKTACGG +AEA+ RN Q+ + LGDS KP+GIAALYK++Y AR RG+ELREYA TCQ FVA+IERAVHLLDTI QQQEQVTSKTQALHATCE+LLSEQH LEAQVKALS+PL+RFGAL ELGPALGLPF SS G+GG
Sbjct: 1 MSWEQYAPTSESQLARLSRLKTACGGEEAEAIVRRNQQXXQERAPATIPTLGDSAKPSGIAALYKDSYYGGXXXXXXXXXXXXXXXXXXXXXXXXXARRRGAELREYARTCQAFVADIERAVHLLDTIAQQQEQVTSKTQALHATCESLLSEQHTLEAQVKALSAPLQRFGALRELGPALGLPFASQSSAGGAGG 195
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 212.2 |
| Seed ortholog evalue | 2.2e-52 |
| Seed eggNOG ortholog | 2880.D7G064 |
| Preferred name | COG3 |
| KEGG ko | ko:K20290 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145 |
| EggNOG free text desc. | intra-Golgi vesicle-mediated transport |
| EggNOG OGs | KOG2604@1,KOG2604@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Exons | 3 |
| Model size | 678 |
| Cds size | 600 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7484.15467.1 >prot_H-paniculata_contig7484.15467.1 ID=prot_H-paniculata_contig7484.15467.1|Name=mRNA_H-paniculata_contig7484.15467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
MSWEKYAPMSETQLERLSHLKTACGGADAEAVRNVVPNQQLQVGKLGDSV KPAGIAALYKETYGATGHLNHGDELGALARSRGSELREYAVTCQTFVAEI ERAVHLLDTITQQQEQVTSKTQALHATCETLLSEQHRLEAQVKALSSPLR RFGALDELGPALGLPFHVLSSRPGSGGVGASSSGAGRPGERIGEGGPSLR back to topmRNA from alignment at H-paniculata_contig7484:906..6566- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7484.15467.1 ID=mRNA_H-paniculata_contig7484.15467.1|Name=mRNA_H-paniculata_contig7484.15467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5661bp|location=Sequence derived from alignment at H-paniculata_contig7484:906..6566- (Halopteris paniculata Hal_grac_a_UBK monoicous) TAAAGACACACCCGGTGTAGAGCTGACCACAGGTCGTGACCTTAGAGTGG
CTGTTGTATTAGTGGAGAAGCGGATCGAATGTCGTGGGAGAAGTATGCAC
CAATGTCAGAGACGCAGCTGGAACGCCTGTCGCATTTGAAGACTGCATGT
GGAGGGGCGGATGCGGAGGCTGTGCGGAATGTTGTTCCAAATCAACAGGT
ATTATCGTCTGTACAAGGAGTCACCGACCAATGCAGATACAGCCAGGTGG
CGCAACCATGCGCCTGATGGTTGGGTCAGTGTGGTTACCAAGCGCGCGAT
TGTGGTACTGAATTCCTGGCATGTGTGTGTTCTTTGTTGAGTTGTAGCAA
CCTGTTTCCACTGAAATGCTCAATACCAACTTGTTCTTGGTTAGCAGGTT
TTGTTCCAGCTGCCAGGTACAAAGTGTCTTGGTGTGTCCTAGATAGGCTC
AACAGCACAGCACAGTCGGTACAGTACGGTATCGAAGTCTGAATAATCTA
TATATCTACGATATAGTTTATGTTGCTGCCAATTAGGGTGCAGAGCCATG
CAAGATCGACTTTGCAATGCTGGGCATGCATAAGTCAGGTTGCACACATT
GCAATGCCTCTTCGTTAGGGTTGCTCAGGCGCTTAGACTGATGGTTTTTA
TTGTTGAACTGACCTCGTCTGCACCAGAGCGAAGATTACTGAACTCCAGG
TTTGCGTCGCTGTTTCGCTGTTTTACACTCATGTATATCGAGGGGTGGTT
CTCACGAGTAGATATTCTTGCACATACTTGACTGCCGAAATGCCCGCAAA
ACGTCAAAAATCCCTGCTTGCCACCGTAAGATGTGATTTTCATTTCGGAA
CAGTTATTACATATTTTATCGAAGTGGTTTCATTATCGTGGGGCGTGTCT
CGGAGCATGGCAATTTGTATTTTCTATCTACGTAAACCCAAGCGTCTTCG
CGCCGAAACATGATTGAAGTTTGAAGATTTTACGTACATCCGATTCGTGT
TGAAAACAAGCAGTTAGTTGTTCGAGAGTTCCGAAGGAGTGTGCCCAAAA
GTAGATCTAGGTGCCCAAAAACGGCTGCATCGGAACGTCTGATCTGTAAC
TTATTTTCGATTATATAAACAGATGCCCGAGGGCTGCGTCCCCGAAAGGA
TTAATGCTATCTCTCATGGAAAACCGCTCAAAATTGAAATCGGTTCCCAT
TCTGATCCAGACGATTATATATACATATATTGCCAATGCATACAAAAAAG
GGCGCACTAAACTCGCCTCACAAGGACACCGGTCGAGATAAATGCTGTGG
TATCGTACGGAAGACCGATCATCGCGATGCTCTCTGCAGGGCCACTACTC
TCAATTTTGACCTGTTGATAGTACTGGTATTTGCTAATGTAATGACCTAA
AACTCAAAACTTGGCACCCCGCATGTCACAAAGTTGGAGCATGGGTGAAA
AAAAATTGGCCTTCATCCATTTTCCTGTAAGGTGAGCGTTGACTGATGTA
TTTTTGTCCGATCGAGTCTCACGCAGTTATTTAATTACTGCAGTCTGCCC
AGCCCACCATTGTTTTACTTGCAAGTTCTCGTGGAGTTGCACCTGCAGAC
AATTGCCTATGGACATAGGAGCTAACGAGATATAGCCCCCCTCGCCGCCA
ACGAGCTATTCAGAGGGAGAAGGTCGTTCCAGCAACCCTAGCCTTGGCTG
CAACACCATCATGATTGTGAAGTTCTCTCAACATACTGTTGTTGGCTATG
GTTCATGTCGCGTTTTGCTCCGTTAAAATCCCAATCGAAGAAGTAGCTGC
AGTCCATTTTGCAAGTTACAGCTAATTGAGTTTCAACGCACGCGCTCCGT
ACACAGGACAGAGATGCATAGCCCTGCTAAAACGAATAGTCAACGGAGGC
AAGGTCGTGCCAGAAATTCCACACTTGGCCGCAACGTCATAGTGGTTATG
GAATTCTGGCATCATGCAGACAAACAGTTACAGTATCGTGTCTATGGTAA
CGTTCCAGTGGTTAGCCCAACCAACAAAAGTAAAGAAAATAAATATTAAT
AAATGAATAAAGGTGACCGGATGGAAACTTGTGAAAACCAATTTTATTTC
TCATAGACACTTTCCGGTAATGTACATTCGTGATCATTTGGCATGAATCG
AACGATGCCGATGACGCACAGCAGGGACCAGCCAAGGATTGTGTATGAGC
AATTCAATGCATGGAGTCGTTTTCCACATGTCACATGTTCATCCTCTATT
CGATGGAATTGCGTACATACCCCAAGGCCTGTATTTGCAGAGAAAGGGAC
CTTAAGTTTAGAGGTGGGGATATTGCGATCGATGGCTTCAATGGGACGAT
CACTAGGGTCAAGAGTTTGCTTGAAAGTGAACTGCTGCACTGAGTCATCC
TCCAATATCTGTCACAAGAGAGGGGGTGAGGGGAGGTCAAGTCGCTTTTA
GAGACTGATCATTCTTCTGAGAGTGGCTGCACAAACATCGTTGACCGCCG
CTGAATCGTTGTTTTGATGTTGCATCATAAGAGGAGCAGCCGTTTGCGCG
GTTTCATGGAAAATAATATTCATTGTTTCAATCCCAAATAGAGAATAGTA
GTAGCGCATGCGGTACATGTCTATGTGACAAAAGTGGTGGATATCTATGG
TACAATATTCCGTATCCTTGGACGAGACCGCTGCAGACAAGATGTCTGCA
TATGCCCTCGATGGACGCTGCAGTTGTGGATGATGCATCAAAGAGCCTTG
TAGCCCACGCAGTCAGAACCTTGGACAGTCAGACGGCGGAAATAAACACG
TACCACCGTTGGTCCCTTGCAGCAGCATCATTTTCGCCCCCTGTCGGTCG
GTGTGTCTAGATTTAACCATGTTTCGTTCCTCCCAAGATGTGTGTTCAAG
ATGAAAACTATTGGTATCAAGCTGCCAGCACTGCTATTATTGATACGATA
CTCATGAAAGGGCAACAGACAGGCTGTACAATTCAGTCAGTAAGTACAAC
AGTCGCACGTAAGTTCAATTGGTCATAATCTTTGATGTAAACTGGAGAAT
TGAGTTCGCTGCATCGTTGACTGCTCCACGTACATGGCTCTTGAAAAAGC
TGTTGGTGTTAATAATACAGCACAGCTCCAACAAGGACGATATGACCGAG
TCACCATACACAACTATGGGCACTGCTTGAAACGCTGGGTGTGTCAGGTG
TTACAGCGTGATCTCATACTCGAAACGAGAGCTTTTTGTGATAACCCTGT
TCGGCGTTGGTGGCTCTGTAGTACAGGACGGCGTGTGAGGAGGTGTACGC
ACTACATACTGCGGTATTTGACTAGAGTATGACTTTATGACGTGGAACTC
GAAATCATTATTGGGTTGCCGTTTTCAGTCAATTCTTGGTCGTCTTTTTT
AGGTACGAGCTGACATATTGCGAGCCTACCGTACCCGGCGTCTTCAGGGT
AAGTTGCTATTGTGTAGACGTTCGTGCCAATAGTGCCAGCTGCTGAGCAT
TGTGCACCAACGGTAGGACTGTAATGAACAATATTAATTTTAGGGCTCTA
TGGAAGCACCTCTACTGCCCCTCCGGGCACTACATGCTGACAGCATTTTG
GTTTCCAATTTGCTCCGTACTCGCTCTCTCTCTCTTTCTTTTGTGTTTTT
GCTTCCCACGTTAACAACAACAACAACAACAACAACAACAAACACAACGA
AACCTGAGGAATACAGTTGCAGGTCGGAAAGCTCGGAGATTCCGTCAAGC
CTGCTGGAATTGCGGCGCTGTACAAGGAGACGTACGGTGCTACGGGACAT
CTCAATCATGGGGATGAGCTGGGCGCGCTGGCGCGTTCGAGAGGGTCGGA
GCTGCGAGAGTATGCTGTAACATGCCAGACCTTCGTCGCCGAGATTGAAC
GGGCTGTGCACTTGCTGGACACGATCACCCAGCAGCAGGAGCAGGTGATA
GAGTACAAGTGTAACTAACTTGACAAACTAGAAAAGGAAACAATGTGAAA
CGAAGGTTTGCCCTCTTGAGGCACTATTGAGAAAGAAATTCCTTTTACAG
CGCTGTTTTGGATAACGGCTGATGAACGAGATCATAATTGCTTGCGTGAG
TTCGTCCACCTGGAAGTTATTACAGAAGAGAAGGCATATGGTCGGAAATA
TACAGTCTGCAATGGTCTCTGCTGTAACGTTGTTCGGGTGGGACGTCTTG
TGGAAGACGTCAACACTCCTAGTAAGTCAGCTCACCCTGTGACCGCTAAC
GGCTAATCTTTGGCCGACGGAGGCCATTATAGCTGTTCCGAAAAAAGAAA
GGAAAATGACAGCAACAAATGTCGAGCGCTGCAGTCGCTGTGGGCAGAGC
CATATGCAAGGATTGCGCTCCCTGTGTTGCATGCACTGTACTGGGCTGGC
TGATGGTCATGCTCTAGAAGTGAATACTTGACGAAGACGTGAAGGATCCT
CAGCTATCGATTCGAAGATGTGAGGAACGGGTTTGGAAGGTGCCCAGTAT
TGTCGTACTCACGTCGTTCCGAGATTTGCAGCAAACTTGGTTGACCTTGA
TCGACCTTGATTCAACTTGGTTGACCTTGATCCACCTTAATCCAAAATGT
GAAATATATGAAAAGGCACTTTACTTGGAGAGAAAATTAGAAAGAAAGAA
TGTTACAGACAGCTATTTTCTACGCCTTTTTGTCACCGTAAGGTATTCAA
TTTCGTGCTTGTACTCGTGACCTCCAGCCTTTACGTCACTACAATACAAC
ACTTGGTGCTTGGTTGGTATTGTGTCTTTCAAAGCATATCTATTTCTTCC
TCACCTCTGTGAAGGTCAGTGTACCTCTAGCTCCGCCCTCCTCGCAGATG
TTTTCAATCTGTGATTGCTTCCAGTTTCGCGTACTCACTTAATGTGTCCG
TTTATCAGTCACTCGGCGATACCGTATTGACATGAAAGATCCACACGTTG
GATGACGTTATTCATTTATCTATTTTGTTAAACGCGTTCATGATACGTCG
AACCTCTAGCCAATAAATCTTGATGCTTGAAAGTGGAGGAACTTTTTGGA
GATACGCTAATACTCCGAAATCAAACACTCCACAACGATTTGACGGAGCT
CTTGCTATCTTTTTTTTTCTGTCTATCTATCTATCTGTTCATCTATCTAT
CTATTTTTCCGTCCGTAGAATCTTTGTGCTGTCATAGTCATGTTCCAAAA
TCCGTGGTGGCCTTGATTGACCCTCATCGGAGGTTTGAAGCTATGATAAC
GCTCGTATGTTCGACGGCCAGAGTCACATTTCTAGTCTTAACGTCATCCC
ACACGTAATCCCGGTCTACAGTCTTCGAAATCATCTCCCTTACCGTACCC
CCCTTGCCCACTTCACCATCTCCATCCAATGTCCCCAAAAATGAAACGTG
GCACGACAGGTAACTTCCAAAACTCAAGCGCTGCACGCAACTTGCGAAAC
CCTACTCTCTGAGCAACACCGCCTGGAAGCTCAAGTCAAAGCCCTCTCCT
CTCCACTGCGGCGCTTCGGTGCCCTGGACGAGCTGGGACCCGCGCTGGGG
CTACCTTTTCACGTACTCTCGTCGAGGCCGGGCAGCGGTGGCGTCGGCGC
TTCCTCGAGCGGAGCAGGGAGGCCGGGGGAGAGGATTGGGGAGGGTGGCC
CTTCGCTTCGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig7484:906..6566- >mRNA_H-paniculata_contig7484.15467.1 ID=mRNA_H-paniculata_contig7484.15467.1|Name=mRNA_H-paniculata_contig7484.15467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig7484:906..6566- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCGTGGGAGAAGTATGCACCAATGTCAGAGACGCAGCTGGAACGCCT GTCGCATTTGAAGACTGCATGTGGAGGGGCGGATGCGGAGGCTGTGCGGA ATGTTGTTCCAAATCAACAGATGTCGTGGGAGAAGTATGCACCAATGTCA GAGACGCAGCTGGAACGCCTGTCGCATTTGAAGACTGCATGTGGAGGGGC GGATGCGGAGGCTGTGCGGAATGTTGTTCCAAATCAACAGTTGCAGGTCG GAAAGCTCGGAGATTCCGTCAAGCCTGCTGGAATTGCGGCGCTGTACAAG GAGACGTACGGTGCTACGGGACATCTCAATCATGGGGATGAGCTGGGCGC GCTGGCGCGTTCGAGAGGGTCGGAGCTGCGAGAGTATGCTGTAACATGCC AGACCTTCGTCGCCGAGATTGAACGGGCTGTGCACTTGCTGGACACGATC ACCCAGCAGCAGGAGCAGTTGCAGGTCGGAAAGCTCGGAGATTCCGTCAA GCCTGCTGGAATTGCGGCGCTGTACAAGGAGACGTACGGTGCTACGGGAC ATCTCAATCATGGGGATGAGCTGGGCGCGCTGGCGCGTTCGAGAGGGTCG GAGCTGCGAGAGTATGCTGTAACATGCCAGACCTTCGTCGCCGAGATTGA ACGGGCTGTGCACTTGCTGGACACGATCACCCAGCAGCAGGAGCAGGTAA CTTCCAAAACTCAAGCGCTGCACGCAACTTGCGAAACCCTACTCTCTGAG CAACACCGCCTGGAAGCTCAAGTCAAAGCCCTCTCCTCTCCACTGCGGCG CTTCGGTGCCCTGGACGAGCTGGGACCCGCGCTGGGGCTACCTTTTCACG TACTCTCGTCGAGGCCGGGCAGCGGTGGCGTCGGCGCTTCCTCGAGCGGA GCAGGGAGGCCGGGGGAGAGGATTGGGGAGGGTGGCCCTTCGCTTCGGGT AACTTCCAAAACTCAAGCGCTGCACGCAACTTGCGAAACCCTACTCTCTG AGCAACACCGCCTGGAAGCTCAAGTCAAAGCCCTCTCCTCTCCACTGCGG CGCTTCGGTGCCCTGGACGAGCTGGGACCCGCGCTGGGGCTACCTTTTCA CGTACTCTCGTCGAGGCCGGGCAGCGGTGGCGTCGGCGCTTCCTCGAGCG GAGCAGGGAGGCCGGGGGAGAGGATTGGGGAGGGTGGCCCTTCGCTTCGG back to top
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