mRNA_H-paniculata_contig7482.15465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7482.15465.1
Unique NamemRNA_H-paniculata_contig7482.15465.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: A0A7S3YK14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK14_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 2.240e-20
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   10 RLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPE 165
            RL+ KLQV+PL+ QLT +SGNLWART +G RAERIEYLL+HEFH LKY+TPE
Sbjct:   25 RLLLKLQVLPLTKQLTCISGNLWARTCKGNRAERIEYLLMHEFHNLKYITPE 76
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: A0A7S0JJ81_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJ81_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 6.080e-20
Identity = 39/56 (69.64%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 LSLRLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEK 168
            LSL+LMFK+QV+PL+ QLTAL+GN+W+++++G RAERIEYLLLHEFH+LKY+ P+K
Sbjct:  108 LSLQLMFKMQVLPLTKQLTALAGNMWSKSLQGKRAERIEYLLLHEFHRLKYVVPDK 163
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: A0A7S0PUL5_9EUKA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PUL5_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 2.380e-19
Identity = 41/56 (73.21%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 LSLRLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEK 168
            LSL+LMFK+QV+PL+ QLT L+GNLWA++++G RAERIEYLLLHEFHKLKY+ P+K
Sbjct:  222 LSLQLMFKMQVLPLTKQLTTLAGNLWAKSLQGKRAERIEYLLLHEFHKLKYVVPDK 277
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: A0A482T3C7_9ARCH (DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3C7_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 5.400e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:   13 LMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEKVF 174
            LMFKLQVVPL+ QLT +SGNLW+RT++G RAERIEYLLLHEFH LKY+ PE+ F
Sbjct:  638 LMFKLQVVPLTKQLTCISGNLWSRTIKGARAERIEYLLLHEFHSLKYILPERKF 691
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 87.8 bits (216), Expect = 7.370e-19
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   10 RLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEK 168
            RLMFKLQ++PL+ QLT ++GNLWARTM+G RAER EYLLLHEFH LKYL PEK
Sbjct:  426 RLMFKLQILPLTKQLTNIAGNLWARTMKGNRAERNEYLLLHEFHNLKYLVPEK 478
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: I1BTM6_RHIO9 (DNA polymerase n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BTM6_RHIO9)

HSP 1 Score: 87.8 bits (216), Expect = 7.380e-19
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 LSLRLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEKVF 174
            LS  LMFKLQV+PL+ QLTAL+GNLWARTM G RAER E+LLLHEFHK KY+ P+K F
Sbjct:  680 LSTSLMFKLQVLPLTHQLTALAGNLWARTMTGARAERNEFLLLHEFHKAKYICPDKTF 737
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: A0A7S2UH04_9STRA (DNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH04_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.010e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   10 RLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEK 168
            RLMFKLQ++PLS QLT +SGNLWARTM+G RAER ++LLLHEFH LKY+ PEK
Sbjct:  869 RLMFKLQILPLSKQLTCISGNLWARTMKGNRAERNDFLLLHEFHNLKYIVPEK 921
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BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: A0A7S3BRI9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BRI9_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 1.060e-18
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 LSLRLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEK 168
            LSL+LMFK+ V+PL+ QLT L+GNLW ++++G RAERIEYLLLHEFHKLK+L P+K
Sbjct:   89 LSLQLMFKIMVLPLTKQLTNLAGNLWTKSLQGKRAERIEYLLLHEFHKLKFLVPDK 144
[Close]
BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: A0A7S2PC81_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PC81_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.160e-18
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    7 LRLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEKV 171
            L+LM KLQV+PL+ QLT ++GNLWARTMRG RAER EYLLLHEFH+LKYL P K+
Sbjct:  209 LQLMLKLQVLPLTKQLTNIAGNLWARTMRGHRAERCEYLLLHEFHRLKYLVPSKL 263
[Close]
BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Match: R1EWX3_EMIHU (DNA polymerase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EWX3_EMIHU)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18
Identity = 40/56 (71.43%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 LSLRLMFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPEK 168
            LSL+LMF+LQV+PL+ QLT L+GNLW+++++G RAERIEYLLLHEFH+LKYL P+K
Sbjct:  462 LSLQLMFRLQVLPLTKQLTGLAGNLWSKSLQGKRAERIEYLLLHEFHRLKYLAPDK 517
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7482.15465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YK14_HETAK2.240e-2075.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0JJ81_9EUKA6.080e-2069.64Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S0PUL5_9EUKA2.380e-1973.21DNA-directed DNA polymerase (Fragment) n=1 Tax=Coc... [more]
A0A482T3C7_9ARCH5.400e-1975.93DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepI... [more]
B8LEG9_THAPS7.370e-1977.36DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
I1BTM6_RHIO97.380e-1974.14DNA polymerase n=1 Tax=Rhizopus delemar (strain RA... [more]
A0A7S2UH04_9STRA1.010e-1875.47DNA polymerase n=1 Tax=Attheya septentrionalis Tax... [more]
A0A7S3BRI9_9EUKA1.060e-1869.64Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2PC81_9STRA1.160e-1874.55DNA-directed DNA polymerase (Fragment) n=1 Tax=Lep... [more]
R1EWX3_EMIHU1.380e-1871.43DNA polymerase n=1 Tax=Emiliania huxleyi TaxID=290... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7482contigH-paniculata_contig7482:70..243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score86.7
Seed ortholog evalue3.7e-15
Seed eggNOG ortholog936053.I1BTM6
Preferred namePOL1
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000428,GO:0000726,GO:0000731,GO:0000734,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005658,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0030880,GO:0030894,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045165,GO:0046483,GO:0048869,GO:0050896,GO:0051321,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903046,GO:1903047,GO:1990234,GO:1990837
EggNOG free text desc.DNA Polymerase alpha zinc finger
EggNOG OGs1GS86@112252,38CZ4@33154,3NY8S@4751,COG0417@1,KOG0970@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Exons1
Model size174
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.2749658-CDS-H-paniculata_contig7482:69..2281622930918.2749658-CDS-H-paniculata_contig7482:69..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7482 70..228 -
1691481510.0667973-CDS-H-paniculata_contig7482:69..2281691481510.0667973-CDS-H-paniculata_contig7482:69..228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7482 70..228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930918.294014-UTR-H-paniculata_contig7482:228..2431622930918.294014-UTR-H-paniculata_contig7482:228..243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7482 229..243 -
1691481510.0785108-UTR-H-paniculata_contig7482:228..2431691481510.0785108-UTR-H-paniculata_contig7482:228..243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7482 229..243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7482.15465.1prot_H-paniculata_contig7482.15465.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7482 70..228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7482.15465.1

>prot_H-paniculata_contig7482.15465.1 ID=prot_H-paniculata_contig7482.15465.1|Name=mRNA_H-paniculata_contig7482.15465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MFKLQVVPLSCQLTALSGNLWARTMRGGRAERIEYLLLHEFHKLKYLTPE
KVF
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mRNA from alignment at H-paniculata_contig7482:70..243-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7482.15465.1 ID=mRNA_H-paniculata_contig7482.15465.1|Name=mRNA_H-paniculata_contig7482.15465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig7482:70..243- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCACTCAGGCTAATGTTTAAGCTGCAAGTGGTTCCCCTCAGCTGCCA
GCTCACCGCTCTCAGTGGGAACCTGTGGGCGCGAACCATGCGTGGCGGTC
GAGCGGAGCGCATCGAGTACCTCCTCCTCCACGAGTTCCACAAGCTCAAG
TACCTCACCCCAGAGAAGGTATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig7482:70..243-

>mRNA_H-paniculata_contig7482.15465.1 ID=mRNA_H-paniculata_contig7482.15465.1|Name=mRNA_H-paniculata_contig7482.15465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig7482:70..243- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTAAGCTGCAAGTGGTTCCCCTCAGCTGCCAGCTCACCGCTCTCAG
TGGGAACCTGTGGGCGCGAACCATGCGTGGCGGTCGAGCGGAGCGCATCG
AGTACCTCCTCCTCCACGAGTTCCACAAGCTCAAGTACCTCACCCCAGAG
AAGGTATTTATGTTTAAGCTGCAAGTGGTTCCCCTCAGCTGCCAGCTCAC
CGCTCTCAGTGGGAACCTGTGGGCGCGAACCATGCGTGGCGGTCGAGCGG
AGCGCATCGAGTACCTCCTCCTCCACGAGTTCCACAAGCTCAAGTACCTC
ACCCCAGAGAAGGTATTT
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