mRNA_H-paniculata_contig748.15463.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig748.15463.1
Unique NamemRNA_H-paniculata_contig748.15463.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig748.15463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig748contigH-paniculata_contig748:13624..14093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size470
Cds size309
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.8262882-UTR-H-paniculata_contig748:13623..137841622930917.8262882-UTR-H-paniculata_contig748:13623..13784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig748 13624..13784 +
1691481509.8521466-UTR-H-paniculata_contig748:13623..137841691481509.8521466-UTR-H-paniculata_contig748:13623..13784Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig748 13624..13784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.8509896-CDS-H-paniculata_contig748:13784..140931622930917.8509896-CDS-H-paniculata_contig748:13784..14093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig748 13785..14093 +
1691481509.8655033-CDS-H-paniculata_contig748:13784..140931691481509.8655033-CDS-H-paniculata_contig748:13784..14093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig748 13785..14093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig748.15463.1prot_H-paniculata_contig748.15463.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig748 13785..14093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig748.15463.1

>prot_H-paniculata_contig748.15463.1 ID=prot_H-paniculata_contig748.15463.1|Name=mRNA_H-paniculata_contig748.15463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MEQKLISAFFCCSAHETRVVRRVGLITDTYGQAPVIPLKHKQRERRHGCM
LLEYALKQFSTCVSSRTGTRSLQRLKYQVLALVGSMGSSSLEVKMNRSTR
QK*
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mRNA from alignment at H-paniculata_contig748:13624..14093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig748.15463.1 ID=mRNA_H-paniculata_contig748.15463.1|Name=mRNA_H-paniculata_contig748.15463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=470bp|location=Sequence derived from alignment at H-paniculata_contig748:13624..14093+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACAGAAGTCGTGACTCCGCTCTACCGACAGATTAGCTTCTTCTTCGAT
GGGTACTTTGCCTCGTTGAGCAGCTATTCACAAACAGGGCGATGAAGCGA
TGGTTGGCTTGTCGGCACGGTACACAATGTGTGAGCACGGCTGATCGATT
GCTGGCGATAGATGGAGCAAAAACTTATCTCTGCGTTTTTTTGCTGCTCT
GCGCATGAAACACGAGTTGTGCGACGAGTAGGATTGATAACGGACACGTA
CGGCCAGGCCCCCGTCATTCCCTTGAAGCACAAGCAGAGAGAGAGGCGAC
ACGGGTGTATGTTGCTTGAGTATGCGTTGAAACAGTTCTCGACTTGTGTG
TCGAGTCGCACAGGCACCCGTTCATTACAGCGCCTCAAGTACCAGGTGTT
GGCCCTCGTAGGATCAATGGGTTCATCGTCACTAGAGGTCAAGATGAACA
GATCGACTCGACAAAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig748:13624..14093+

>mRNA_H-paniculata_contig748.15463.1 ID=mRNA_H-paniculata_contig748.15463.1|Name=mRNA_H-paniculata_contig748.15463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig748:13624..14093+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCAAAAACTTATCTCTGCGTTTTTTTGCTGCTCTGCGCATGAAAC
ACGAGTTGTGCGACGAGTAGGATTGATAACGGACACGTACGGCCAGGCCC
CCGTCATTCCCTTGAAGCACAAGCAGAGAGAGAGGCGACACGGGTGTATG
TTGCTTGAGTATGCGTTGAAACAGTTCTCGACTTGTGTGTCGAGTCGCAC
AGGCACCCGTTCATTACAGCGCCTCAAGTACCAGGTGTTGGCCCTCGTAG
GATCAATGGGTTCATCGTCACTAGAGGTCAAGATGAACAGATCGACTCGA
CAAAAATAAATGGAGCAAAAACTTATCTCTGCGTTTTTTTGCTGCTCTGC
GCATGAAACACGAGTTGTGCGACGAGTAGGATTGATAACGGACACGTACG
GCCAGGCCCCCGTCATTCCCTTGAAGCACAAGCAGAGAGAGAGGCGACAC
GGGTGTATGTTGCTTGAGTATGCGTTGAAACAGTTCTCGACTTGTGTGTC
GAGTCGCACAGGCACCCGTTCATTACAGCGCCTCAAGTACCAGGTGTTGG
CCCTCGTAGGATCAATGGGTTCATCGTCACTAGAGGTCAAGATGAACAGA
TCGACTCGACAAAAATAA
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