mRNA_H-paniculata_contig74758.15458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74758.15458.1
Unique NamemRNA_H-paniculata_contig74758.15458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74758.15458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74758contigH-paniculata_contig74758:58..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size480
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.100794-CDS-H-paniculata_contig74758:57..4651622930917.100794-CDS-H-paniculata_contig74758:57..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74758 58..465 +
1691481509.4878163-CDS-H-paniculata_contig74758:57..4651691481509.4878163-CDS-H-paniculata_contig74758:57..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74758 58..465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.1477766-UTR-H-paniculata_contig74758:465..5371622930917.1477766-UTR-H-paniculata_contig74758:465..537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74758 466..537 +
1691481509.5068452-UTR-H-paniculata_contig74758:465..5371691481509.5068452-UTR-H-paniculata_contig74758:465..537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74758 466..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74758.15458.1prot_H-paniculata_contig74758.15458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74758 58..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74758.15458.1

>prot_H-paniculata_contig74758.15458.1 ID=prot_H-paniculata_contig74758.15458.1|Name=mRNA_H-paniculata_contig74758.15458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
GGGGSRLHSSWNRSLSKLREPPLSSGPHRYHPTDVRRQRFVACVQVEGDH
LRVSHGPLHLAHLQLLQSDPPHGLAVVHEVIDCDHFVLVCRLKRCPRVHA
SHTQRMLGLGPLCALTVFIAPRWTNRPHMWMYVMP*
back to top

mRNA from alignment at H-paniculata_contig74758:58..537+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74758.15458.1 ID=mRNA_H-paniculata_contig74758.15458.1|Name=mRNA_H-paniculata_contig74758.15458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=480bp|location=Sequence derived from alignment at H-paniculata_contig74758:58..537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGTGGGTCCCGGCTTCATTCATCTTGGAACCGATCTTTGTCAAA
GCTTCGCGAGCCTCCACTCTCAAGCGGCCCTCACCGTTACCACCCCACAG
ACGTCAGAAGACAGCGATTTGTAGCGTGTGTCCAAGTAGAGGGCGATCAC
CTCCGCGTTAGCCATGGCCCTCTCCACCTGGCGCATCTGCAGCTGCTCCA
AAGCGACCCGCCACACGGTCTGGCTGTGGTTCATGAGGTCATCGACTGTG
ACCATTTTGTTCTCGTCTGTAGACTGAAGAGATGTCCGCGCGTGCATGCG
TCGCACACGCAAAGAATGCTGGGGCTGGGGCCGCTGTGTGCGTTGACGGT
ATTCATTGCGCCGCGCTGGACGAACCGCCCCCACATGTGGATGTATGTGA
TGCCGTAAGACTTGCTTCCTGCGGATGCGTCCCTGCACTCCACGGACCTA
CGCCCGAACGGGTAGGGTAGCTCGTGTACT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig74758:58..537+

>mRNA_H-paniculata_contig74758.15458.1 ID=mRNA_H-paniculata_contig74758.15458.1|Name=mRNA_H-paniculata_contig74758.15458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig74758:58..537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGTGGGTCCCGGCTTCATTCATCTTGGAACCGATCTTTGTCAAA
GCTTCGCGAGCCTCCACTCTCAAGCGGCCCTCACCGTTACCACCCCACAG
ACGTCAGAAGACAGCGATTTGTAGCGTGTGTCCAAGTAGAGGGCGATCAC
CTCCGCGTTAGCCATGGCCCTCTCCACCTGGCGCATCTGCAGCTGCTCCA
AAGCGACCCGCCACACGGTCTGGCTGTGGTTCATGAGGTCATCGACTGTG
ACCATTTTGTTCTCGTCTGTAGACTGAAGAGATGTCCGCGCGTGCATGCG
TCGCACACGCAAAGAATGCTGGGGCTGGGGCCGCTGTGTGCGTTGACGGT
ATTCATTGCGCCGCGCTGGACGAACCGCCCCCACATGTGGATGTATGTGA
TGCCGTAAGGGGGGGGTGGGTCCCGGCTTCATTCATCTTGGAACCGATCT
TTGTCAAAGCTTCGCGAGCCTCCACTCTCAAGCGGCCCTCACCGTTACCA
CCCCACAGACGTCAGAAGACAGCGATTTGTAGCGTGTGTCCAAGTAGAGG
GCGATCACCTCCGCGTTAGCCATGGCCCTCTCCACCTGGCGCATCTGCAG
CTGCTCCAAAGCGACCCGCCACACGGTCTGGCTGTGGTTCATGAGGTCAT
CGACTGTGACCATTTTGTTCTCGTCTGTAGACTGAAGAGATGTCCGCGCG
TGCATGCGTCGCACACGCAAAGAATGCTGGGGCTGGGGCCGCTGTGTGCG
TTGACGGTATTCATTGCGCCGCGCTGGACGAACCGCCCCCACATGTGGAT
GTATGTGATGCCGTAA
back to top