mRNA_H-paniculata_contig7472.15457.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7472.15457.1
Unique NamemRNA_H-paniculata_contig7472.15457.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7472.15457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7472contigH-paniculata_contig7472:6967..9315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size343
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7472.15457.1prot_H-paniculata_contig7472.15457.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7472 6967..9315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.0298774-CDS-H-paniculata_contig7472:6966..70271622930917.0298774-CDS-H-paniculata_contig7472:6966..7027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7472 6967..7027 -
1691481509.450582-CDS-H-paniculata_contig7472:6966..70271691481509.450582-CDS-H-paniculata_contig7472:6966..7027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7472 6967..7027 -
1622930917.0471313-CDS-H-paniculata_contig7472:7617..77231622930917.0471313-CDS-H-paniculata_contig7472:7617..7723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7472 7618..7723 -
1691481509.4632704-CDS-H-paniculata_contig7472:7617..77231691481509.4632704-CDS-H-paniculata_contig7472:7617..7723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7472 7618..7723 -
1622930917.0594056-CDS-H-paniculata_contig7472:9140..93151622930917.0594056-CDS-H-paniculata_contig7472:9140..9315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7472 9141..9315 -
1691481509.4745162-CDS-H-paniculata_contig7472:9140..93151691481509.4745162-CDS-H-paniculata_contig7472:9140..9315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7472 9141..9315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7472.15457.1

>prot_H-paniculata_contig7472.15457.1 ID=prot_H-paniculata_contig7472.15457.1|Name=mRNA_H-paniculata_contig7472.15457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MVNITLPSAFRSSKRRQRSTRGTINKRRAPMATRARTVLLAQHQQQQEQQ
EAADKEKEGASVGPGLNGAFVDAAAAATNTPWVVCHDQGGRPFWLNTATG
QQTYPMFGSCSGPA
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mRNA from alignment at H-paniculata_contig7472:6967..9315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7472.15457.1 ID=mRNA_H-paniculata_contig7472.15457.1|Name=mRNA_H-paniculata_contig7472.15457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2349bp|location=Sequence derived from alignment at H-paniculata_contig7472:6967..9315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAACATCACGTTGCCATCCGCCTTCCGCAGCAGCAAGCGTCGCCA
GAGGTCTACGCGAGGTACGATCAACAAGCGGCGCGCGCCGATGGCAACCA
GGGCCAGGACAGTGTTGCTGGCTCAGCATCAACAACAACAAGAACAACAG
GAGGCCGCCGACAAGGAGAAGGAAGGTATGCAACGCAGCGGGGGTCGTCG
CAGCTAAGATAATGGAGTCATACGACACTTTCTTTCCTCATGTTGGTTAG
CTTGGTATCTAACTGCTATGCAGGGTGGGGGAAACTGGGCTGTGACCGCT
TGCAACTACCACGGACACAGACTGCCCATATCTCCTTTTGGCCCTTTGAA
CTCCCCTTAGCCCACGCAGATTCGAGACAACCCCACCCACCGTTCAACGT
GCTGCCCCATCAACAATTTAGCGATTTCAACGTGTCAAGAGGAATTAGCA
GCCGAACGTAGATGCCCGTTCTGAAGCTGTTGCTGTGGCCAGTATCATAT
CGCCTGAAACAAATAGAAACACCTGGGTGCGGTATGATGCACTGTAAGCA
AGAGAGTGTTTTTAGTGTGGTGAATTTTGGCGCCAAAACGTTCAGTCGAA
GCAGTTCAGAAGCTGCCAGTTGGCATTTATTTAACACAATCTAGTGGGAA
CACACACAACGCAGCCATTGTAGTAAATCTTTTCAGCGGCAAGCAGGCAG
CCCACTTATCTGTAGTATAGATGACCCTCGGACAAAGCGCGTATACAGTT
GTGCATTGTTTGGTCAGTGGCAATCGATTCGTAGTGTATGATTTGGGTGA
GCCTTGTCTAACGCCTTCTCAGTGGGAGATTGTTTAGCGAACACGATCCG
GAGTTTGTTCGTATGCGTATCGCATTCAACGGCGGTCGAGCGAGGGTGTG
GAGGAAGAGCTAGAAGTGGAGACGACTCTACCTTCATTATTTGAGCCAAA
ATAACATGGCCTAGGGTTAGGGTTAGGGTTAGGGTTATATCGTATGCATC
CGTGTCCAGCTGTGCATTGTTCTTTCAGCGGCACCGAAGTTGAAACCGAA
TGTTTCAGGTGTGCAGAGTGTAACTCTCTTCGCAGGAGATTATACAGCGG
ACATCATGTCGAGTTCGTTAGTATGCATGTCGTATGTAATGTCGGTGGAG
CGAGGGTGTGAAAGAATAGCCAAAAGTAGAGACAACTCAATCGTCATGTG
TTGAACTAAAACATGCCCACCGCACACGCCTCTTATCTTAGCTTCATTTT
TTTTGCCGGTGGCAAACAAAGCCATGTACTTGAATACCAGCTCGCGGGAT
GTGGGTCATGTCGTATGCACGAACCTTGCGTGATCCTACCCTTGTGCACA
CATAGCCAAGCCGTGAAAGTATCTCAACTCGAAATTTTCTGCGGAGCGTG
CAGCACAAAACAATATAGGCTTGATGCCCGCGCCACTCGCATCCGTTATG
GTATAGACGTGTCCTCAGTGCTTTTCTCTTTGTCCCCATTGCTGCAATAC
GCACATGTTACGGTAATCTTCATATCCGATGATGGAATCATGTCCATAAA
GCAACTAAGTTTTTCCCCATGTTGACTCGCGCCTCTCTTCAGGAGCGTCG
GTAGGGCCTGGTCTCAACGGAGCTTTCGTGGACGCAGCAGCGGCCGCCAC
CAACACCCCGTGGGTCGTGTGCCATGATCAGGGAGGACGGCCATTCTGGT
AAGGAATAACCAAGGGAGATATACTGGAGCAGTATTCGAAGTTGCATGTT
GTGTTGGCTCCTACCGCCCTTGACGTGTTGAGCGTGCCCAGTAAAGTTAT
CAGGGCCTTACCGCGCTAGAAGGGATTGACTCTGGAGTTTAGTAGGAGCT
GTTGAAAAATATAGTGCTCCATCATGTGCTTGAAAGGAACAAATTGGTGT
CGTATCTCCATGCAATGGAAAAAGGTAAAAACTATTCTAACGAGGTGCAT
TGCAAGGCAGGCAAGGCGAAAGGACAGAGTCGAGGATGCAAGGAATACTC
GCAATGCCCAATAATGATGCATAGATTCGCCTGTGGGTCCTGGGAAGATC
CCCATACAACGGTTGATGGCTAACGTTCATAATGACTAACCATGCAAATA
CGAGGATCACTCCGTGACCTTGGATCCTTTACTGTTGAACACTCCGACAT
CGCTGGAATACGTGGTTATGCACCGCTCGGCTGTATGTCCTCACCCGAGA
TATACATGGTCAAAACCCGAATGTGACATCTCTGATCCTCTACACCCTTG
TTACATTTTTCCGAACCTCCCTTGGAAACGGAACACAGGTTGAACACGGC
CACGGGACAGCAAACGTACCCCATGTTCGGCAGCTGCAGTGGACCCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig7472:6967..9315-

>mRNA_H-paniculata_contig7472.15457.1 ID=mRNA_H-paniculata_contig7472.15457.1|Name=mRNA_H-paniculata_contig7472.15457.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig7472:6967..9315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAACATCACGTTGCCATCCGCCTTCCGCAGCAGCAAGCGTCGCCA
GAGGTCTACGCGAGGTACGATCAACAAGCGGCGCGCGCCGATGGCAACCA
GGGCCAGGACAGTGTTGCTGGCTCAGCATCAACAACAACAAGAACAACAG
GAGGCCGCCGACAAGGAGAAGGAAGATGGTGAACATCACGTTGCCATCCG
CCTTCCGCAGCAGCAAGCGTCGCCAGAGGTCTACGCGAGGTACGATCAAC
AAGCGGCGCGCGCCGATGGCAACCAGGGCCAGGACAGTGTTGCTGGCTCA
GCATCAACAACAACAAGAACAACAGGAGGCCGCCGACAAGGAGAAGGAAG
GAGCGTCGGTAGGGCCTGGTCTCAACGGAGCTTTCGTGGACGCAGCAGCG
GCCGCCACCAACACCCCGTGGGTCGTGTGCCATGATCAGGGAGGACGGCC
ATTCTGGAGCGTCGGTAGGGCCTGGTCTCAACGGAGCTTTCGTGGACGCA
GCAGCGGCCGCCACCAACACCCCGTGGGTCGTGTGCCATGATCAGGGAGG
ACGGCCATTCTGGTTGAACACGGCCACGGGACAGCAAACGTACCCCATGT
TCGGCAGCTGCAGTGGACCCGCCGTTGAACACGGCCACGGGACAGCAAAC
GTACCCCATGTTCGGCAGCTGCAGTGGACCCGCC
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