prot_H-paniculata_contig7468.15450.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7468.15450.1
Unique Nameprot_H-paniculata_contig7468.15450.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length344
Homology
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 1.700e-61
Identity = 138/340 (40.59%), Postives = 177/340 (52.06%), Query Frame = 0
Query:    3 LLAQLLGDVATITYSVPPDGRKCDSEPELGQRQES----LRHVLDKSFGKIVKAYISPE-PSLPEK-----------ARACTELRYLQLSLEEAFYLKHVEKKLALVI--VNLSSLPAPQSRERCSATEERLSSPSRGWNDDESAAAPSNAWH--------------------DVYGISYSHGDNHLRIDVDEAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAGG-GDSWGHLSTMTRLMPDIAKCLLLCGVSY-DEGILLQGGDPPHASDVSHRPLDPSSLAALGVAEVTALSFSRARDTE 302
            L A LLGDVA + +       +C+      +R +     + ++L++SFGK+ +A    E PS+              A   + LR LQLSLEEAFYL HV++ LAL +   NL    AP       A               E      + WH                    + +G  +                +S E+AW+YCC RR +FP  FAVYRHFR + + V TGHKYGA +VLYEG PDECHSRYCVHV G GG GDSW H+ TMTRLMPD+AK LL+CGV+Y  +G  L+ G  P        P+D SSLAAL  AEVTAL FSR+RD++
Sbjct:    4 LRALLLGDVAKLVFPT----HRCEERHREDRRHDGDGKGIGYILERSFGKVSEACSQRELPSISSXXXXXXXXXXPAATIDSGLRCLQLSLEEAFYLAHVDESLALAVPRANLVVPTAPI------ALPXXXXXXXXXXXXXEEPPGLLHDWHXXXXXXXXXXXXXXXSLSGEEAFGCGFGXXXXXXXXXXXXXPLLSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTGGGGRGDSWSHVKTMTRLMPDVAKSLLVCGVTYRPQGPTLETGLSP--------PIDTSSLAALAAAEVTALRFSRSRDSD 325          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: A0A2R5LL66_9ACAR (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LL66_9ACAR)

HSP 1 Score: 74.7 bits (182), Expect = 2.090e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 0
Query:  165 QAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAGGGD----------SWGHLSTMTRLMPDIAKCLLLCGV 253
            + WQ  C  R NFP  + VY HFR+KG+VV TG KYG  ++LY+  P   H+ + V V    G +          SW  LS + RL  +  K +LLC V
Sbjct:  177 ELWQRLCTLRPNFPARYTVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTQGAELREVQDCRFRSWTSLSGLVRLNFNSTKTVLLCYV 275          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: A0A293M5Q4_ORNER (tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293M5Q4_ORNER)

HSP 1 Score: 72.8 bits (177), Expect = 9.290e-11
Identity = 38/101 (37.62%), Postives = 52/101 (51.49%), Query Frame = 0
Query:  165 QAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAGGGD----------SWGHLSTMTRLMPDIAKCLLLCGVSY 255
            + WQ  C    NFP  +AVY HFR+KG+VV TG KYG  ++LY+  P   H+ + V V    G +          SW  L  + RL  +  K +LLC V +
Sbjct:  184 ELWQRLCTLCPNFPARYAVYHHFRTKGWVVRTGSKYGTDYLLYKDGPPFYHATFSVLVRSTEGAELRETDDRRFRSWTSLGGLVRLNLNAMKTVLLCYVIF 284          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: UPI00193A242B (tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A242B)

HSP 1 Score: 71.6 bits (174), Expect = 1.060e-10
Identity = 32/108 (29.63%), Postives = 57/108 (52.78%), Query Frame = 0
Query:  157 EAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAG----GGD------SWGHLSTMTRLMPDIAKCLLLCGVS 254
            E+  +   + W   C +++ FP T+AVY HFR+KG+V   G K+G  ++LY+  P   H+ Y V +          D      +W  ++ + RL+  ++K LL+C ++
Sbjct:  104 ESKEIDISEQWNLFCSKKKRFPVTYAVYHHFRTKGWVPKEGLKFGTDYILYKHGPSYTHAAYAVIIQEVNDDLTNSDRSSRHLTWTSMAGLGRLVSSVSKSLLICSIT 211          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: A0A023G8Z9_AMBTT (tRNA-intron lyase n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023G8Z9_AMBTT)

HSP 1 Score: 72.4 bits (176), Expect = 2.640e-10
Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 0
Query:  138 DVYGISYSHGDNHLRIDVDEAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAGGG----------DSWGHLSTMTRLMPDIAKCLLLCGV 253
            + Y +SY  G     I  D    +   + WQ  CG   NFP  +A Y HFRSKG+VV +G K+ A ++LY+  P   H+ + V V G               SW  LS + R+  + +K LL+C V
Sbjct:  395 EAYFLSYGLG---CLIVKDGDQELDLLKLWQKMCGLHDNFPARYAAYHHFRSKGWVVRSGCKFAADYLLYKDGPAFYHASFSVVVRGVWADTLEEIPDRRVQSWPALSGLIRVNANASKTLLICYV 517          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: A0A131YJ71_RHIAP (tRNA-intron lyase n=3 Tax=Rhipicephalus TaxID=426455 RepID=A0A131YJ71_RHIAP)

HSP 1 Score: 71.2 bits (173), Expect = 6.720e-10
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 0
Query:  138 DVYGISYSHGDNHLRIDVDEAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAGGG----------DSWGHLSTMTRLMPDIAKCLLLCGV 253
            + Y +SY  G   ++ D DE   +   + WQ  CG   NFP  +AVY HFRSKG+VV +G K+ A ++LY+  P   H+ + V V                 SW  LS + R+  + +K +LLC V
Sbjct:  455 EAYFLSYGLGCLIVK-DGDEDLELL--KLWQRLCGLDDNFPARYAVYHHFRSKGWVVRSGAKFAADYLLYKDGPPFYHATFSVIVRSVWADTLETEPDHRLQSWPSLSGLIRVNGNASKSVLLCHV 577          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: A0A7S3Z2U5_9EUKA (tRNA-intron lyase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z2U5_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.280e-9
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 0
Query:  138 DVYGISYSHGDNHLRIDVDEAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCV--HVMGAGGGDSWGHLSTMTRLMPDIAKCLLLCGVS 254
            + Y ++Y      LR D +    V+  +A Q    +  +F   +AVY +FRS+G++V +G K+GA F+LYEGSP   H +Y V  H M       +  L T++RL  +  K L++C V+
Sbjct:   59 ETYFLTYMVKCAELR-DSETGDVVTRTRADQLFSRQNPSFSARYAVYHYFRSRGWIVRSGLKFGADFLLYEGSPSRFHGKYSVIVHPMSRRDPQLFEKLETVSRLAANAVKKLMVCLVT 176          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: UPI0018930827 (LOW QUALITY PROTEIN: tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018930827)

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-9
Identity = 42/126 (33.33%), Postives = 60/126 (47.62%), Query Frame = 0
Query:  138 DVYGISYSHGDNHLRIDVDEAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAGGG----------DSWGHLSTMTRLMPDIAKCLLLCGV 253
            + Y +SY  G     I  D    +   + WQ  CG   NFP  +A Y HFRSKG+VV +G K+ A ++LY+  P   H+ + V V                 SW  LS + R+  + +K +LLC V
Sbjct:  453 EAYFLSYGLG---CLIVKDGDTDLELLKLWQRFCGLHDNFPARYAAYHHFRSKGWVVRSGAKFAADYLLYKDGPPFYHATFSVIVRSVWADTLRQSXDHRLQSWPSLSGLIRVNGNASKSVLLCHV 575          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: UPI0006B0E2C2 (tRNA-splicing endonuclease subunit Sen2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0E2C2)

HSP 1 Score: 68.9 bits (167), Expect = 2.330e-9
Identity = 43/137 (31.39%), Postives = 66/137 (48.18%), Query Frame = 0
Query:  138 DVYGISYSHGDNHLRIDVDEAARVSDEQA-WQ-YCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVM-------------GAGGGDSWGHLSTMTRLMPDIAKCLLLCGVSYDEGI 259
            + + +SY  G     +  DE  ++ D    W+ +C    +NFP  +  Y +FRSKG++V TG KYGA F+LY+  P   H+ Y V V+             G     +W  L+ + R+   +AK +L C V    GI
Sbjct:  196 EAFFLSYGLG---CLLVADEKGKILDILTMWRRFCELSHKNFPAFYTAYHYFRSKGWIVKTGLKYGADFLLYKDGPPFYHASYSVLVVVVKEGILREDSDKGKDRHSTWASLAALNRVTLQVAKEILYCHVIQPNGI 329          
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Match: A0A7I8VFI2_9ANNE (tRNA-intron lyase n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VFI2_9ANNE)

HSP 1 Score: 69.7 bits (169), Expect = 2.730e-9
Identity = 36/123 (29.27%), Postives = 65/123 (52.85%), Query Frame = 0
Query:  137 HDVYGISYSHGDNHLRIDVDEAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKYGAQFVLYEGSPDECHSRYCVHVMGAGGGDSWGHLSTMTRLMPDIAKCLLLCGVSYDEGI 259
            ++ + +SY+ G   L I  ++    S  + W+  C   ++F   ++ Y +FR KG++V +G KYGA F+LY+  P   H+ + V +  +    SW  LS + R+   + K +L+C V+    I
Sbjct:  152 YEAFFLSYALGV--LVIKSEKEEEYSIIELWKKFCSIEEDFIQLYSAYHYFRGKGWIVKSGIKYGAHFLLYKDGPTYFHASFAVQIFKSDEKLSWLGLSALNRIQEQVGKEVLICYVTAPSDI 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7468.15450.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLV6_ECTSI1.700e-6140.59tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A2R5LL66_9ACAR2.090e-1139.39tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros ... [more]
A0A293M5Q4_ORNER9.290e-1137.62tRNA-intron lyase (Fragment) n=1 Tax=Ornithodoros ... [more]
UPI00193A242B1.060e-1029.63tRNA-splicing endonuclease subunit Sen2-like n=1 T... [more]
A0A023G8Z9_AMBTT2.640e-1034.13tRNA-intron lyase n=1 Tax=Amblyomma triste TaxID=2... [more]
A0A131YJ71_RHIAP6.720e-1034.92tRNA-intron lyase n=3 Tax=Rhipicephalus TaxID=4264... [more]
A0A7S3Z2U5_9EUKA1.280e-934.45tRNA-intron lyase (Fragment) n=1 Tax=Lotharella gl... [more]
UPI00189308271.600e-933.33LOW QUALITY PROTEIN: tRNA-splicing endonuclease su... [more]
UPI0006B0E2C22.330e-931.39tRNA-splicing endonuclease subunit Sen2-like n=1 T... [more]
A0A7I8VFI2_9ANNE2.730e-929.27tRNA-intron lyase n=1 Tax=Dimorphilus gyrociliatus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 174..263
e-value: 2.0E-20
score: 74.7
IPR006676tRNA-splicing endonucleaseTIGRFAMTIGR00324TIGR00324coord: 156..255
e-value: 4.7E-19
score: 66.9
IPR006676tRNA-splicing endonucleasePANTHERPTHR21227TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2coord: 61..257
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 178..256
e-value: 1.3E-18
score: 66.8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..343
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 176..259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7468contigH-paniculata_contig7468:5612..8431 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7468.15450.1mRNA_H-paniculata_contig7468.15450.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7468 5274..8886 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7468.15450.1 ID=prot_H-paniculata_contig7468.15450.1|Name=mRNA_H-paniculata_contig7468.15450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
MALLAQLLGDVATITYSVPPDGRKCDSEPELGQRQESLRHVLDKSFGKIV
KAYISPEPSLPEKARACTELRYLQLSLEEAFYLKHVEKKLALVIVNLSSL
PAPQSRERCSATEERLSSPSRGWNDDESAAAPSNAWHDVYGISYSHGDNH
LRIDVDEAARVSDEQAWQYCCGRRQNFPTTFAVYRHFRSKGYVVHTGHKY
GAQFVLYEGSPDECHSRYCVHVMGAGGGDSWGHLSTMTRLMPDIAKCLLL
CGVSYDEGILLQGGDPPHASDVSHRPLDPSSLAALGVAEVTALSFSRARD
TEAVGGTSTTSKQGRMASSPDADGGGRRSWRKTEAKAREKKGK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011856tRNA_endonuc-like_dom_sf
IPR006676tRNA_splic
IPR006677tRNA_intron_Endonuc_cat-like
IPR036167tRNA_intron_Endo_cat-like_sf