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Homology
BLAST of mRNA_H-paniculata_contig7447.15427.1 vs. uniprot
Match: D8LIB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB4_ECTSI) HSP 1 Score: 318 bits (814), Expect = 1.940e-106 Identity = 182/253 (71.94%), Postives = 210/253 (83.00%), Query Frame = 1
Query: 16 DRGAA-ATTVYNPYKIFQAAQRCMGDPSVVAIVLVELLGNCATQDVLMGAAASVLNLYYGKGGLRVCSMTDFGKFAGELAEELGKRNSLEAKQAEEKMKEAQSVYELFEEADTDRSGTISKEEFINFEASIGVTSEAEALXXXXXXXXXXXXXXXXVEWLQYCVPGPGCDKDSFDCAGRHGLRSYSTAINGVSCNWCENLYPVGSKMFACRECDCDACLECAISHLQSCTTRISCERA-------GSSSCSLC 750
+RGAA A+TVY+PYKIFQAAQRCMGDPSVVA VLVELLG+CAT DVLM +AASVL +YYG GGLR SMTDFGKFAGELA+ELG RNS QAEEKMKEAQSVYELFEEADTD SGTISK+EF F ++I V+S+ EALXXXXXXXXXXXXXXX +EWLQ+CVPGPG D +SF+CAG+HGL+S + + +CNWC + +P GS+MF+CRECDCDACLECAI HLQSC TRI CERA + SC++C
Sbjct: 7 NRGAASASTVYDPYKIFQAAQRCMGDPSVVAKVLVELLGDCATPDVLMASAASVLEIYYGGGGLRKTSMTDFGKFAGELADELGARNST---QAEEKMKEAQSVYELFEEADTDNSGTISKQEFCVFGSNIDVSSDEEALXXXXXXXXXXXXXXXFLEWLQFCVPGPGRDPNSFNCAGQHGLQSCAAPADDTTCNWCGSKWPAGSRMFSCRECDCDACLECAILHLQSCDTRIFCERAVVDPSKTSARSCAVC 256
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | EF-hand domain pair |
| Ec32 ortholog | Ec-24_001510.1 |
| Exons | 3 |
| Model size | 764 |
| Cds size | 762 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7447.15427.1 >prot_H-paniculata_contig7447.15427.1 ID=prot_H-paniculata_contig7447.15427.1|Name=mRNA_H-paniculata_contig7447.15427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=254bp
MSAFDDRGAAATTVYNPYKIFQAAQRCMGDPSVVAIVLVELLGNCATQDV LMGAAASVLNLYYGKGGLRVCSMTDFGKFAGELAEELGKRNSLEAKQAEE KMKEAQSVYELFEEADTDRSGTISKEEFINFEASIGVTSEAEALELFAQV DSDKNGVISFVEWLQYCVPGPGCDKDSFDCAGRHGLRSYSTAINGVSCNW CENLYPVGSKMFACRECDCDACLECAISHLQSCTTRISCERAGSSSCSLC PPPE back to topmRNA from alignment at H-paniculata_contig7447:3058..9833- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7447.15427.1 ID=mRNA_H-paniculata_contig7447.15427.1|Name=mRNA_H-paniculata_contig7447.15427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6776bp|location=Sequence derived from alignment at H-paniculata_contig7447:3058..9833- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCTGCCTTTGATGACAGAGGGGCGGCGGCGACAACCGTGTACAACCC
ATATAAGATATTCCAAGCTGCGCAGCGATGTATGGGAGATCCATCTGTCG
TGGCCATAGTCCTCGTCGAACTGCTGGGAAACTGCGCTACACAAGATGTC
CTGATGGGCGCGGCGGCAAGCGTTTTGAACTTGTACTATGGGAAGGGGGG
GCTGCGAGTTTGCAGCATGACCGACTTCGGAAAGTTTGCGGGAGAACTCG
CGGAGGAGCTGGGCAAGCGCAACAGCCTAGAGGCGAGTCCAGACAATCAC
TCCTTGCTCCATGCTCCGAGTTTATTGGGGTTGGTGGTGGTGGTGGTGGT
GGTGGTGTCATACAATCGGTTTACTTAATTATCGCTGCACCACTCTCTGT
ACAACATACAGTAGTTGGTTCTGAACAGTATATTGGTGAGATTCAGAGTG
TATCGTCACAATCAAAGTGCAATCGTAAAGACGCGTAGACCTCGCACAGC
GCATTCAGCTCGGAGCTTTGGACATCATACGGTGGCGCGAATGAAAGCTC
TGACCTATGCGGTCTCGCTGATACTCTTGTTGGGTCTGTCAGGCTCTCCG
ATCAAAAGTTGTCGTCATTTCAAAATTTGTACCCGCGCCATTCACGATTA
ATCGTTTTCAAGCTTTCAGAACGGGTGAAATTGTTCTGTTTCAGCCCTAA
CACCGCCATACTTCAACCGGGGACTGTTGTAATGCTATGCTCGTCCTCTC
ATGGGGCGAAGCTTTCATTCAAGTGACTTCGTGAGGTCTAACTCTTCGAA
CTGACCGTGCTGTGCGATTTCTAAGGCTGCACTCTGATTGTGAAACTACA
CCCTGAATCTCACCAATATACTGTCTGGTGTTTTGTGTCCTCCTCTTGCG
ATTTCTATGAATGACCCCGTAACGTCAGATTCATCTTGTTGCCCCTGGAA
CTTCTGTGTTGATCTTGACCTTGATTTGCTCTTTAGCATGTGTGTACATA
AGTCCATCGTGTGCAGAGCTTTTCCAGTTCGGTCGGAAACTTTTACCAGC
AGCCCAGTTCACAGCTGACTCTGATGTGTTGCCCAAGGAGTAAAACTTGA
ACCAAGAACCAAGTTGTAGGCCGTTTAGGTTGTGCACTAGCGGGCGGGAA
AATCAGAAACGAAATCGACACTACAGACAGTACTTTCAATTTGTGCAAGA
AAACACACTTCCACAGTACTAATAACGACACACAGCATCACCGATACGGC
GGGAATCATAAAGGCTATCTTGGTTGACTCTTTCAACAGGCGACTAGACC
ACAAAAAAAAGTCAAACTGATAACCATGACAGCTGCAGAGAGTCCCACAA
CACAATATGCGTATTAGGTTGGACGATAGGCTATGCTCAGCTGCACACTT
CAAACTTTGTTTGACGGGAATCTGGTTTGTACTGGGGAGTTTCAGCAAAT
CACGTCTAGTTGAAAATACAAAATGAGTTGTTTGTCTGTAACTGTCTTCG
AGCTAGGCACAGAAAAATATGGGTTCTCATTAACTTGGAACGGACACGCC
GTCAATGTCGAACAGATTGGACCCAAATGAAGTATACGTTGCTCAGTATA
TCAAGAGCTATGGCTTCAACTACGTTTTGTATTTTGTAGCACCGGGTGCA
GTGAAACTCTCCCATTCATTATGCGTTCCTTGACCATCCCTTTTAACTCC
GTGGTCTTGGTTACTTTTTTCCTGTACACATTCAATTTGCCTGGACATGT
TTCATTTTCGATTCTATAAAATATTTTGTTTGTGACTCTCCAGAATAGAC
GTGTGAAATCAAATATTCAAGTATGATACAGGGTGTAGCATGCAAACTGG
CCAATCACAGCATTTTCGATATTTCATTTTCGATTTTGTTTCGCCCCTTA
GTACACGGTGTTAGGCAAGGTTTTACTAACATCAACATTTTGTCCCGTCA
CTTTGCGCGGAATAACACGGAGTTGATGCAGATGGCCCTTTGCTTCGTCG
CTAAACGAGCAGCAGCCACGAGCTCGTTTGATCTATGTAGCGGTGGAAGC
GCTGTAGTAGCTGCAGTTGCGTCTCCCAACGATGACGACCTAGTAGGCTC
TGGTACGTCTTCCATCTCCACGGCGTAGGGTACGCTTGGTACAGACACCA
GGGTGTGGGGACAGCAGAGTGCCAGGTCGCTGGAGAATGACGTATACAGT
CGCTGCCCCCCCGACCCCCCCCCTCCTCCCCCCAAATAGTTTTATTCGGT
AAAGGGAGCCTACGTATCTTGAATTCCAATTTACGGACCCCGTTGTGCTG
CCTTATTCAATCACTAAATAAAAGAAACGATATGAACACCATCCAATTAA
CCCTTATACTCGGGTGCAAGCATTGCGACACATTTTGACGCGCGATTTTT
GACAGACTCGCGTCGCAGAAGGGGGGGGGGGTGCTTTTTGGCAGGGGGAC
GGGGTACCGAATGTGGATGGACATAATTGCTCTCGCCGGGGTGAGGTCAG
ACCCGTATGTCGACAAGATATGAAAATCAGTAGAGCGACGTTGCAATGTG
CTTTAATCATTAGTATAAATTTAGAACACCAGCTTGCGACGTTAGACTGC
TTCTCATCGTTGAGTTTTTTTTATCATTTTTTTCCTGGGCAATTTCGCCC
CGAGGAAAAAGCTTTGTACAAATTATCGAGGAGTTTTTTCGAGAGAAGAT
GATCCCCATTTACGCTAGATCCCCTCAGATGGCCCAACCAGGAGAAAGTT
CCCACCGATCTTACTTTATTTTCTTTTGGGGACAAACGTCCCAAGCGCTT
ATATTAATTGTGCAGAGTTTACTGCATGTGGAGGGTCCCACGATCACAGC
GGGGGCCAATCACCACACATCGTGCCGCACGCATTTATCACATCTCTCGT
ACACCTGAATGAACACTGACTGTTTCTTATACCTGTTACACTTGGCACGT
TGCCGCCGACACAGTCAAGCTAGACACACGATGCTGGGGTGATAGCCGCA
GGACTGCAGCCTTACAGGAGCAACTAGATTCCTCATCGCTGGGCAGCGAT
AGCGACTTTGCTGCTGCAAGGCTATCCCATGCTGCCGCCCTTGTCATGGA
TGACGATGGCTACAATGATGACAGTCCATAATCTATCTCGCCTGGACTTC
GAACCACCCTTCGCGGAACCGGCCGAATACACATACCATATTTGATTTGC
TTGATCCGGAAAACGATCGACAAGCCGAGGCCAAAGTCCACCCGCTACAG
TGCTAGAGAACCGTCGGCGTACCTTGACACCTCGCCGTGGAGGAACACGG
ATTACATTTAGTATGTATTTTCTCATGCTTTGTCGTCGACTTATTCTGAT
TGTTTTTTTCTCACTTTTTCTGCGTGTTTATTTTCCCAAACAAAACTAAT
AACCAGGTAAAAAATGTATCTTGAAAAAACGCAACGATGAGATGTGGTTT
TAAATGCGAAAAAGGGCATGAAAGTGTTTGTGACAGTATTCACGTACGTC
AAGGGCTGGCTACAGTAGCCGCAACGCTGTGTTTTTGGTGTAAAGGTGGT
ACAGCTGTCAGACTGCCGTACACACGTTGACTCCATCAAGCGGTGGCAGT
CAGCTGGGTAGCGCAAACAGCATGATAATATATAATTGTGCACGGCGACA
AAGGAAACAAACAGTACCGTGTACTATTAATATTAATACCGCATGCAGCA
CCATATCTGCGGCACAACATGAAGAAGTAGGGATAGAGCAGGTAGGCACC
AGCATCCCGAGAGTTCCGATGCGAACGATAGCTACTGCGTGTGTGACATC
CTGTTATAGGTGACGGTGCGCACAGGAACAGCAGTGAGCGGCCTGCCTGC
CGCAGCTGTGTCAGTCGGAGCGTGTCAACATGACTAAATCTCATGGCGAT
TAGGGTAATTAGGTGTTCGGATTCCCCGGACCAAGTTCTTCCAGACATTT
TTTTTTTTCAGGTATAAGGGGGTTAACATCGTATAAATCGATATGCTGGC
TAAACAATCAGGGCATAAGTTGGTCCAAATCCTGCCGACTGCTTGCCGCC
GGGAGACCTCAGCGGTCTGTCAGCCCTCAGTCGACCATGTTGAGGGAGTG
TTTTGGAAAACACACTTTCGTTTGCACCATTTTTTGTTGATATGTTGCCC
TTTTCAACCGATACTCATTCCAGTGACCTGTAGTTTCATCGTTCCGTCGG
TTATCGGTGCAGCCACTGCAGCAATCATTGACCGCATTTGAGTAGTTTTT
ATGTCGCCGCGTTGTGTTATACTTTTTCGCGTGAAACGGTAACTAAAACA
TGCTGAAAAACAATCTTGAGATCAGCTGAAAAGCGACCTCAGCATTTTCT
TCCAGCAAGAGTACTCCTCGCTGGGTAGCGATGGCAACCTTCAGCTGCTG
TTGCGAGGCTGTCCTATGCCTAGATGATCCTCCATCCTACCCACATCTCA
AAGCACGATTCGCGGAAGTAGCCGATTGCAACATTTATGCTTAGGCCAAA
GCCCACCCGCCGTAGTAAAGAACAGTCGACAGCCTTGACACATCGTGGTG
AAACGTGCATGGCATATATCTTCCCGTACCCCACCGCCCGATTTTTTTTT
GACCGTTGACTCTCCGACCCCCACCCATGACTAGCGAACATCATTTCTTC
GCGTACTTTTTTCTTCCGAGTAAAAATGATGGTCAAACAGCAAAAATGCC
ACGAAAGAATGCCCCGACAAGAAGCTGTCTCACGGCGAAAATTGGTCCGC
CAAATTAGTTCGCCTATGGCAAATATTCCGGCGGCCTCAAAACCTTCCTG
ATGAATCTGCGTCACAGTCCCGGCGCAAACATATTTTTTTACGTTTTTTC
TGCGGTGCTCCACCAAAAAGTGGCTACAGTATTATTTATCAGGCCGATAG
TAGAGGATAATTGATTCGATATTTAGATATCGCCTATTCGTGTCGGACTG
TTACCGTTGTCCAATGTGTGTACTCTCTGCAGCCACTCAACGGAAGAAAC
GTAGTAGCTGCACACAGACCAACACTCGACGCACTGCCTGCTTACCACCG
CAGTGTACAGGGTATGTTATTCACCAGGTCTCCTCCAGAAGGCCTGTTGG
CCACAGAATGCCGCAAAATGTACTTGACTGGTTTAGTCGATTTGGCGATT
GTATGTGGCAGGGCAGAATTGCCTAACCCCAAAGATGACTCTAGATTTAG
TGAAAACCCTTCGTGGTGTCAATCGGGGCTCGGAAGCATCTAAAATCGGC
CCAACTGAGGTCTGGTAACCGCATTGCTGAAATTCGACACTTCGCGGCGG
GAACGCTCACCACCCTGAAGCCACTCAAGCGCATCGAGGGATAATATACG
AAATACTATATACTCGCCCTGCCGGTACAACCGTCGAATCTAACCGTTTT
GTGAGCCGTAACAACAAACCGTTTGTGCCTGCGCGGCTAGAGCAGGCGGA
GGAGAAGATGAAAGAAGCACAGAGCGTCTACGAGCTTTTTGAGGAGGCCG
ACACAGACAGGTCTGGCACCATCTCGAAGGAGGAGTTCATCAACTTCGAA
GCCAGCATTGGCGTCACGTCTGAGGCGGAAGCGTTGGAGCTGTTCGCCCA
GGTGGACTCGGACAAAAATGGTGAGAAAGAAAATAACTCTTCTTTTCCGT
GCAACCCTACGCGACCTCACCAACATATAGATGCAACATCAATGGCAGTA
GGCGAGAGGGCGCCAGGCTGATTGCTCCCCTCTCAACGATGCTGGTTGTG
GTCCACAGTATAGGTCGACATGACCGCTTGCTTTTGGGCTACACCTGGAC
CACGCGCACAAGACGACGTTAACTGACTGGCGCAAACCACCGCCAAACAA
CACGTTTCATTCAACTCACCCTGGTGATGGCATGTTTGGCACTTAACAGT
TAATCGTGAATCAAGCATCATTCGACGAGAGGAAATTATGTTAAATATGC
TACTGTAGTTTTATTCAAATGACGCCAACCAAATCTTGCAAATACCACTC
TTAGTGGTTGTCGCGTGACGACGTCTTCAAAAGCGTTGACGGTTAAACAC
AGATTACACTGCATGAGCCCGTGTTAATCCATACAAAAAGTAGAACAATA
ACAGAATGCAAGCAGAACGAGAAAACGACGTTCCGTGCTGCGTTCTGTAT
CTGCTTCCCCGCTGAGAGCCGTCCGGTTACATGTAGTCAGATATTGAATT
TCATGGCACTCTGAACATGTATGCCCTCGCTTTTGCATACAACCGGCGGG
TGAGGAAATTCTGAGACTTGCTCCGCTGTAACACAAGCTACTACAACGCA
ACTGCTGCTCCGTTGCTGAAGAGCGCACAAAGCATAGCAATAGCCGAAGC
ACCCCATCCTCCACCGTACTCAGTAGTGGCGACGCGACAGCGTATTGTTT
GTTTGATGTCCCTTTCTCCGTTCCCATGTTTTCCTCCCGTCGTGTTTTTT
GTGTCGAACAAAATCACACCCTACATACAGGTGTAATCTCGTTCGTGGAG
TGGCTTCAGTATTGCGTTCCGGGGCCCGGGTGCGACAAGGACAGCTTCGA
CTGTGCGGGTCGCCACGGACTGAGGTCATACAGCACTGCAATCAACGGGG
TGAGCTGCAACTGGTGCGAGAATTTGTATCCTGTGGGTAGCAAGATGTTT
GCGTGTCGAGAGTGCGACTGCGATGCATGTCTTGAATGTGCCATCTCGCA
CCTGCAGTCCTGCACGACACGCATCAGCTGCGAGCGGGCGGGCTCATCAT
CGTGTTCGTTGTGTCCGCCGCCTGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig7447:3058..9833- >mRNA_H-paniculata_contig7447.15427.1 ID=mRNA_H-paniculata_contig7447.15427.1|Name=mRNA_H-paniculata_contig7447.15427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1524bp|location=Sequence derived from alignment at H-paniculata_contig7447:3058..9833- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGTCTGCCTTTGATGACAGAGGGGCGGCGGCGACAACCGTGTACAACCC ATATAAGATATTCCAAGCTGCGCAGCGATGTATGGGAGATCCATCTGTCG TGGCCATAGTCCTCGTCGAACTGCTGGGAAACTGCGCTACACAAGATGTC CTGATGGGCGCGGCGGCAAGCGTTTTGAACTTGTACTATGGGAAGGGGGG GCTGCGAGTTTGCAGCATGACCGACTTCGGAAAGTTTGCGGGAGAACTCG CGGAGGAGCTGGGCAAGCGCAACAGCCTAGAGGCGAATGTCTGCCTTTGA TGACAGAGGGGCGGCGGCGACAACCGTGTACAACCCATATAAGATATTCC AAGCTGCGCAGCGATGTATGGGAGATCCATCTGTCGTGGCCATAGTCCTC GTCGAACTGCTGGGAAACTGCGCTACACAAGATGTCCTGATGGGCGCGGC GGCAAGCGTTTTGAACTTGTACTATGGGAAGGGGGGGCTGCGAGTTTGCA GCATGACCGACTTCGGAAAGTTTGCGGGAGAACTCGCGGAGGAGCTGGGC AAGCGCAACAGCCTAGAGGCGAAGCAGGCGGAGGAGAAGATGAAAGAAGC ACAGAGCGTCTACGAGCTTTTTGAGGAGGCCGACACAGACAGGTCTGGCA CCATCTCGAAGGAGGAGTTCATCAACTTCGAAGCCAGCATTGGCGTCACG TCTGAGGCGGAAGCGTTGGAGCTGTTCGCCCAGGTGGACTCGGACAAAAA TGAGCAGGCGGAGGAGAAGATGAAAGAAGCACAGAGCGTCTACGAGCTTT TTGAGGAGGCCGACACAGACAGGTCTGGCACCATCTCGAAGGAGGAGTTC ATCAACTTCGAAGCCAGCATTGGCGTCACGTCTGAGGCGGAAGCGTTGGA GCTGTTCGCCCAGGTGGACTCGGACAAAAATGGTGTAATCTCGTTCGTGG AGTGGCTTCAGTATTGCGTTCCGGGGCCCGGGTGCGACAAGGACAGCTTC GACTGTGCGGGTCGCCACGGACTGAGGTCATACAGCACTGCAATCAACGG GGTGAGCTGCAACTGGTGCGAGAATTTGTATCCTGTGGGTAGCAAGATGT TTGCGTGTCGAGAGTGCGACTGCGATGCATGTCTTGAATGTGCCATCTCG CACCTGCAGTCCTGCACGACACGCATCAGCTGCGAGCGGGCGGGCTCATC ATCGTGTTCGTTGTGTCCGCCGCCTGAGGTGTAATCTCGTTCGTGGAGTG GCTTCAGTATTGCGTTCCGGGGCCCGGGTGCGACAAGGACAGCTTCGACT GTGCGGGTCGCCACGGACTGAGGTCATACAGCACTGCAATCAACGGGGTG AGCTGCAACTGGTGCGAGAATTTGTATCCTGTGGGTAGCAAGATGTTTGC GTGTCGAGAGTGCGACTGCGATGCATGTCTTGAATGTGCCATCTCGCACC TGCAGTCCTGCACGACACGCATCAGCTGCGAGCGGGCGGGCTCATCATCG TGTTCGTTGTGTCCGCCGCCTGAG back to top
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