mRNA_H-paniculata_contig7443.15425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7443.15425.1
Unique NamemRNA_H-paniculata_contig7443.15425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: D7FV47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV47_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.070e-29
Identity = 68/105 (64.76%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:    1 MVASATSAVMILYTSFTATTSFVVFGLLQ----------------------------YKRTSFIVLSIGAVVALSAVMMGGHSLYNFMVPREEGEAEGGFCSVGE 231
            MVASATSAVMILYTSFTATTSF+VFGLL+                            YKRTSFIVLSIGAVVALSAVMMGGHSLYNFM P  + E  GGFCSVGE
Sbjct:    1 MVASATSAVMILYTSFTATTSFMVFGLLEEDYAIALFVVGLAATAVGQVVVNHLVKKYKRTSFIVLSIGAVVALSAVMMGGHSLYNFMFPNPDEEGGGGFCSVGE 105
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: D8LFQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.470e-23
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 MVASATSAVMILYTSFTATTSFVVFGLLQYKRTSFIVLSIGAVVALSAVMMGGHSLYNFMVPREEGEAEGGFCSVG 228
            MV+S+TSAVMIL+TSFTATTSFVVFGLL +KR SFI+LSI +VVALSA +MG + LY+ + P   GE E G CSVG
Sbjct:    1 MVSSSTSAVMILFTSFTATTSFVVFGLLTFKRPSFIILSIASVVALSAFLMGINGLYDIIHPTAGGEEENGICSVG 76
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A836CFF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFF2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.030e-17
Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    4 VASATSAVMILYTSFTATTSFVVFGLLQ----------------------------YKRTSFIVLSIGAVVALSAVMMGGHSLYNFMVPREEGEAEGGFCSVGE 231
            VASATSA MIL+TSFTATTSF+VFGLL+                            Y+R+S I++SIGAVVALSA++MGG SLY    PR++ E+ GGFC+ GE
Sbjct:  121 VASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQDDES-GGFCAAGE 223
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A6H5JFJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.090e-17
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   85 QYKRTSFIVLSIGAVVALSAVMMGGHSLYNFMVPREEGEAEGGFCSVGE 231
            +YKRTSFIVLSIGAVVALSAVMMGGHSLYNFM P  + E  GGFCSVGE
Sbjct:  485 KYKRTSFIVLSIGAVVALSAVMMGGHSLYNFMFPNPDEEGAGGFCSVGE 533
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A835ZGS5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGS5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.300e-16
Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    4 VASATSAVMILYTSFTATTSFVVFGLLQ----------------------------YKRTSFIVLSIGAVVALSAVMMGGHSLYNFMVPREEGEAEGGFCSVGE 231
            VASATSA MIL+TSFTATTSF+VFGLL+                            Y+R+S I++SIGAVVALSA++MGG SLY    PR++ E+ GGFC+ GE
Sbjct:  421 VASATSACMILFTSFTATTSFMVFGLLRRDYAQLMFVVGLLATFVGQVGVNYLVQRYQRSSLIIVSIGAVVALSALLMGGQSLYFLAFPRQDDES-GGFCAAGE 523
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A7R9YCQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCQ0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.930e-9
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:    4 VASATSAVMILYTSFTATTSFVVFGLLQY----------------------------KRTSFIVLSIGAVVALSAVMMGGHSL 168
            VASATSA MILYTSFTAT+SF+ FG+++Y                            KR S I+LSIG+VV+LS VMMGG SL
Sbjct:  167 VASATSACMILYTSFTATSSFIAFGMVKYDYAIFLFFVGLVATAAGQLGVNYLIKKYKRQSLIILSIGSVVSLSTVMMGGQSL 249
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A7S4DAW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAW5_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 6.190e-8
Identity = 43/87 (49.43%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    4 VASATSAVMILYTSFTATTSFVVFGLLQYK----------------------------RTSFIVLSIGAVVALSAVMMGGHSLYNFM 180
            VASATSAVMILYTSF+A TSFVVFGLL+Y                             R S+I++SIGAVVALS  MMG  S   F+
Sbjct:  392 VASATSAVMILYTSFSAATSFVVFGLLRYDYGFMLFVVGIICTAVGQVGVNYLVKKSGRGSYIIMSIGAVVALSTAMMGLQSAMAFV 478
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A4D9D1X1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1X1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.200e-8
Identity = 43/105 (40.95%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:    4 VASATSAVMILYTSFTATTSFVVFGLL----------------------------QYKRTSFIVLSIGAVVALSAVMMGGHSLYN-FMVPREEGEAEGGFCSVGE 231
            VA+A+SA MIL+TSFTATTSF +F LL                            +Y R S+I+ SIGAVV LSA++MG  S+ + F  P   G+A G  C   E
Sbjct:  420 VAAASSACMILFTSFTATTSFYIFDLLIYDYAVWLFIIGFLFTSVGQYGLSYLMKRYNRNSYIIFSIGAVVGLSALLMGLQSIISLFSGPGSGGKAGGAICDAAE 524
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A6V1T5B1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T5B1_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 6.200e-8
Identity = 43/87 (49.43%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    4 VASATSAVMILYTSFTATTSFVVFGLLQYK----------------------------RTSFIVLSIGAVVALSAVMMGGHSLYNFM 180
            VASATSAVMILYTSF+A TSFVVFGLL+Y                             R S+I++SIGAVVALS  MMG  S   F+
Sbjct:  415 VASATSAVMILYTSFSAATSFVVFGLLRYDYGFMLFVVGIICTAVGQVGVNYLVKKSGRGSYIIMSIGAVVALSTAMMGLQSAMAFV 501
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BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Match: A0A7S2WVP7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVP7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.040e-6
Identity = 40/104 (38.46%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:    4 VASATSAVMILYTSFTATTSFVVFGLLQYK----------------------------RTSFIVLSIGAVVALSAVMMGGHSLYNFMVPREEGEAEGGFCSVGE 231
            VASATSA MI+YTSFTA TSF VFGLL+                              R S I+ S+ AVV +SAV+MG HS+             G  C+ G+
Sbjct:   73 VASATSATMIMYTSFTAMTSFYVFGLLKMDYAVICLILGLCVTFVGQIGLTILIKKLGRDSLIIFSVAAVVGVSAVLMGTHSIIQLASAPSLSGGGGAICAKGD 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7443.15425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FV47_ECTSI1.070e-2964.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFQ1_ECTSI3.470e-2368.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CFF2_9STRA4.030e-1750.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JFJ9_9PHAE5.090e-1783.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGS5_9STRA3.300e-1650.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YCQ0_9STRA7.930e-949.40Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S4DAW5_HETAK6.190e-849.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D1X1_9STRA6.200e-840.95Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6V1T5B1_HETAK6.200e-849.43Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2WVP7_9STRA1.040e-638.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7443contigH-paniculata_contig7443:7218..10068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001320.1
Exons2
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.547147-CDS-H-paniculata_contig7443:7217..73041622930912.547147-CDS-H-paniculata_contig7443:7217..7304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7443 7218..7304 +
1691481507.7455344-CDS-H-paniculata_contig7443:7217..73041691481507.7455344-CDS-H-paniculata_contig7443:7217..7304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7443 7218..7304 +
1622930912.561324-CDS-H-paniculata_contig7443:9921..100681622930912.561324-CDS-H-paniculata_contig7443:9921..10068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7443 9922..10068 +
1691481507.7542365-CDS-H-paniculata_contig7443:9921..100681691481507.7542365-CDS-H-paniculata_contig7443:9921..10068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7443 9922..10068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7443.15425.1prot_H-paniculata_contig7443.15425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7443 7218..10068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7443.15425.1

>prot_H-paniculata_contig7443.15425.1 ID=prot_H-paniculata_contig7443.15425.1|Name=mRNA_H-paniculata_contig7443.15425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MVASATSAVMILYTSFTATTSFVVFGLLQYKRTSFIVLSIGAVVALSAVM
MGGHSLYNFMVPREEGEAEGGFCSVGE*
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mRNA from alignment at H-paniculata_contig7443:7218..10068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7443.15425.1 ID=mRNA_H-paniculata_contig7443.15425.1|Name=mRNA_H-paniculata_contig7443.15425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2851bp|location=Sequence derived from alignment at H-paniculata_contig7443:7218..10068+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGCGTCCGCGACGTCTGCAGTAATGATCCTCTACACGAGCTTCAC
GGCCACGACCAGCTTCGTGGTGTTCGGTCTTTTGCAGGTGTGTAGAAACG
CCAATTTTGGTACACGCTGAACTTGGCCCTTGGAAGAGGAAAGCACCCAG
TACCAGAAGCAGGTCAGATCAGATGAGTTGATCAGTCACTCTTGTGATTT
TACCGTCGTGACGGAAACAACCTTTTCCAGGTGGAAATCGATCCCCTCGT
TTCCCCCCATCTTACGTGGAAATGGATGGATTTACGTGTTGATGTTGACC
TGAAACATGCTGCAAGCATGTTACCTTTTATGCGGTTTCGCAACTGCGTT
GCGAATTGGTTGCTGTCTGTTATCTGGTGGGTCGTCCCCTGCTCCCCATC
TTCGATTAGGTTTGTGAGCAGTCGTTGTACTGTTCAGTTTTTTTTCGTCA
GTTGTGGTTTTGATGTCGCTAGTTGTTTGAGTAATGCATATGCCCTATCT
CCTGAAACACAGCTATACAAGCTCCAGTCAAGCCTCGAAAGCTATGTCTT
AATGTCGAACGCCAAAAAGACCCAACCTGTTGGATGTTTCAAGCCGTGCT
CTGGAGAGAATGCTGAATAGGAGGTTCTGTATGTATGTATGTAATATATT
TTCCATGGTCAGTATACAGTGTCGATTGGTCGTGTGTATGTTCGTCCTCC
TATCATTATAGTCATGACACAAGGGGCAGGGTTGGACGTTGGTGTCGACC
GCCCAGAAGTGTATGCCGATTGGTGGGAAATAAGTGTTGACTGCTCAACC
TCATGACATTGATGCATCCCAAAGCCTTCATGATGTCACCGTCTTGAGTC
ATCCTGACATGTGCTGTGTGCATGCGTTTTTTGCTCGAATTGGCGACGGC
ACCGATTGGGGGGTTGCTAACGAGCAGTATGTCAAGCGGGCCGGCTTGGA
GTTAGCGTTAGGTTTGGCGTTTGGGTTGGTTCTACTCGCCCGGGGCACAG
CCAACTGTGAACCATGAAAAAAGCTCTTAACCATGAGTTTCGACCACTTT
GTGAATAGGCCTCTGGCCGTAGGTGCTGTTGTTTTTCCGAGATCGCGGCG
GCAGTCGGTCAGTTGAAAGATTCAAAAGCCGTTCTCGAAACCAAGCAAGT
ATCTATTGTGTGTTGATAATCGTCATGCTTCAAAGAGTGATTCAAAGACG
GTACTGTAACGTCCTTTAACTTATGGTTAATTTGCTGATACTTTCGGATT
TTATTGTGATTAGGATGATAAAACAAACATGTGAAATTTTGGCCAAGGTA
AAGCTTGGATATGTGTTGGATATATATGGCGTATTTTTGCACCCTCCTGG
ACAAATACGAATGCTTGGCGTATTCGCTACGGATAGTAAAGAGTATTTAT
TCGTCTGAGCTTCAGAATGGGTAGACACGTAGAATCAAGTACTCACCCCT
GCCCGTTCGATCTGCGAGTATTATTAGCAGTCGTGGATGGTCCGGGGCAC
ATAGAAAACATGACCCCATGGTGAAACTCGGAGGAATACGTTTTATTTTT
CGTGGTGAATACGCCAAGTGTTCGTATTTATCTAGGGGGGTGGTATTTTG
CCAACGAGCGGAGCACCAAGTCCCCTCGTTTGTTTCCATCCTTTCGAGCT
GGGGAGAATGATCACTTTGTGCCCCGTTTTTTTGTTTTTTTTCTAGGTTC
CCCAACAATTGTTTTGTTGGCCTGTCACCGGTTGATCGATCCCCCCCGTA
CGCTATGTATTGTCGTGTGCATTTTATCTCCCCCGGTGATGTTTAAAGGC
GGATTATGCTCTGGCGCTGTTTTGTGTGGGTGTTGCGGCGACAGCCGTGG
GACAAGTGGTGGTCAACCATCTGGTCCGAAAGGTAGGTAACATAGGTCCA
TGTGTCAATCAGCCAGTACTAGGCGACGATTAGCTATGTCCACCCTCTCT
CTCTCTTTGGAGAGCACGATGCTCTCATGAGAGCCCGGCTCTGGAGGGGA
CATCGCCTTCTTTGGCACGCACTCGTTTATGATGTGTTGCGGATGAACTG
GCTCTTCAGGGTCGAAGCAGCCATAATTAGAAAATCTCTTCCGGATAGTG
GGACGGAGACATCGGTGGTTATTAGATAGGGGGGAAGATATTTAGGAATG
TCAGGAATGTGATCTCCACATTTTTGTTGAAGCGAATTTTATTAAACCAG
CATGGTGGTGAATGTTACCTACTTTCCGCAACATTTTTTTTTCATTCAAC
ACAATCAAGTTTTTTTGCGTTCCCTGAATCTTGCAGAAACAACTCTAGAT
CAAAAGCAAGCATGGAGAGAGAGACAGTCGTTTGTTTGACGCGTGCATGC
GTATGGCCTACACTACACCACAATGCAGTATAACTGAGTTGACGTGGTTC
GCCATGACCAACAGCTGGTACTACTTGGTAAATATTAAAGCGGAGTTGCT
TGTTTGACCGCCGGGGATGTAATCTCCTATCACAAGGTTATTTTGCCAGC
ACTTTTGTGTCATGTTCCAGGATGTGTACTTGTGTTTCACCGAGTACAAT
AAGCGATGCCATAACAGGCAATGCAAAACCGATACAACCGGCCCAGCCCA
AGCGACTCATGCCCATCTCTCACGTCTTCTTTTACCTTCTACACCATATA
TATGTGCATGTGTGTTTGCTGCTGCTTCCCGTTGGCGGGACGACGGCCTC
GCAGTACAAGCGAACGAGCTTCATTGTGTTGTCCATTGGAGCTGTGGTGG
CTCTGAGCGCTGTCATGATGGGAGGTCACAGTCTCTACAACTTCATGGTC
CCACGGGAAGAGGGCGAGGCGGAGGGAGGATTTTGCTCAGTAGGAGAGTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig7443:7218..10068+

>mRNA_H-paniculata_contig7443.15425.1 ID=mRNA_H-paniculata_contig7443.15425.1|Name=mRNA_H-paniculata_contig7443.15425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig7443:7218..10068+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGCGTCCGCGACGTCTGCAGTAATGATCCTCTACACGAGCTTCAC
GGCCACGACCAGCTTCGTGGTGTTCGGTCTTTTGCAGATGGTAGCGTCCG
CGACGTCTGCAGTAATGATCCTCTACACGAGCTTCACGGCCACGACCAGC
TTCGTGGTGTTCGGTCTTTTGCAGTACAAGCGAACGAGCTTCATTGTGTT
GTCCATTGGAGCTGTGGTGGCTCTGAGCGCTGTCATGATGGGAGGTCACA
GTCTCTACAACTTCATGGTCCCACGGGAAGAGGGCGAGGCGGAGGGAGGA
TTTTGCTCAGTAGGAGAGTGATACAAGCGAACGAGCTTCATTGTGTTGTC
CATTGGAGCTGTGGTGGCTCTGAGCGCTGTCATGATGGGAGGTCACAGTC
TCTACAACTTCATGGTCCCACGGGAAGAGGGCGAGGCGGAGGGAGGATTT
TGCTCAGTAGGAGAGTGA
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