mRNA_H-paniculata_contig743.15410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig743.15410.1
Unique NamemRNA_H-paniculata_contig743.15410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: D8LH81_ECTSI (RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH81_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.490e-48
Identity = 87/113 (76.99%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLK--SGADDFDEMDG 348
            IP QATAKE+REL S+FGQLKRVR+PKKFDGGHRGFAF+DFLT QEAM AK SLESTHFYGRHLVGEWAED +D+DTLRAKAARD+  P  G R AKR K  S  DDF +MDG
Sbjct:  763 IPFQATAKEIRELCSSFGQLKRVRLPKKFDGGHRGFAFVDFLTAQEAMGAKKSLESTHFYGRHLVGEWAEDGEDMDTLRAKAARDLRGPSNGGRPAKRQKAASSGDDFADMDG 875
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A1W0A677_9STRA (RNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A677_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.230e-36
Identity = 69/101 (68.32%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKS 318
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  SL S+H YGRHLV EWAED DD+DTLRAKA+RD+ S   G R+AK+LKS
Sbjct: 1405 IAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWAEDADDIDTLRAKASRDLASIEDGQRAAKKLKS 1505
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A1V9YGD5_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.880e-36
Identity = 72/110 (65.45%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 345
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  SL S+H YGRHLV EWAED +D+DTLRAKA RD+ S   G+R+AK+LKS  D  D+MD
Sbjct:  696 IAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWAEDAEDLDTLRAKAGRDLASIEDGHRAAKKLKS-KDVEDDMD 804
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A024UIF0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIF0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.670e-35
Identity = 69/108 (63.89%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDE 339
            I  +AT K++RELF+ FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD++TLRAKA+RD++S   G R+AKR K+ ADD ++
Sbjct:  701 IAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEATSAFAALSSSHLYGRHLVLEWAEDADDLETLRAKASRDLNSIQDGQRAAKRRKN-ADDMED 807
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A485LS48_9STRA (Aste57867_25042 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS48_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.270e-35
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 345
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAF++FLT  EA +A  +L S+H YGRHLV EWAED DD++TLRAKA+RD+ S   G R+AKR K+  D+ D+ +
Sbjct:  695 IAFEATVKDVRELFGAFGQLKMVRMPKKFDGKHRGFAFVEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLETLRAKASRDLASIEDGQRAAKRRKNADDEEDDQE 804
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A0P1AX43_PLAHL (Rna recognition motif-containing family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX43_PLAHL)

HSP 1 Score: 137 bits (345), Expect = 3.120e-35
Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:   25 QATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 345
            +AT+ E+RELF  FGQLKRVRMPKKFDG HRGFAF++FLT QEA NA  +L S+H YGRHLV EWAED DD+DTLRAKA+RD+ +     R  KR+K   +D D  D
Sbjct:  705 EATSNEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTDQEAQNAFSALASSHLYGRHLVLEWAEDADDIDTLRAKASRDLTAINDSERR-KRMKRQKEDIDNDD 810
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A067CYA7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYA7_SAPPC)

HSP 1 Score: 136 bits (342), Expect = 7.840e-35
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKS 318
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  SL S+H YGRHLV EWA+D DD++TLRAKA+RD+ S   G R+AK+LKS
Sbjct:  687 IAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWADDADDMETLRAKASRDLASIEDGQRAAKKLKS 787
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A3L6UUB8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UUB8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.340e-34
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKR 309
            I  +AT K++RELF+ FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD+DTLRAKA+RD++S    +RS  R
Sbjct:  233 IAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLDTLRAKASRDLNSIQGKDRSIVR 330
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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A3R7WET7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WET7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.340e-34
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKR 309
            I  +AT K++RELF+ FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD+DTLRAKA+RD++S    +RS  R
Sbjct:  233 IAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLDTLRAKASRDLNSIQGKDRSIVR 330
[Close]
BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A6G0WZD7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZD7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.710e-34
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 1 
Query:   16 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 345
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD+++LR KA+RD+ S   G R+AKR K   D+ D+ +
Sbjct:  675 IAFEATVKDVRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLESLRVKASRDLASIQDGQRAAKRRKQADDEEDDQE 784
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH81_ECTSI1.490e-4876.99RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A1W0A677_9STRA5.230e-3668.32RNA-binding protein n=1 Tax=Thraustotheca clavata ... [more]
A0A1V9YGD5_9STRA8.880e-3665.45RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A024UIF0_9STRA1.670e-3563.89Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LS48_9STRA2.270e-3560.91Aste57867_25042 protein n=1 Tax=Aphanomyces stella... [more]
A0A0P1AX43_PLAHL3.120e-3563.55Rna recognition motif-containing family protein n=... [more]
A0A067CYA7_SAPPC7.840e-3566.34Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3L6UUB8_9STRA2.340e-3465.31Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A3R7WET7_9STRA2.340e-3465.31Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0WZD7_9STRA2.710e-3460.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig743contigH-paniculata_contig743:600..1564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog2880.D8LH81
Preferred nameRBM19
KEGG koko:K14787
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008406,GO:0009791,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0018996,GO:0019843,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034462,GO:0034470,GO:0034471,GO:0034622,GO:0034641,GO:0034660,GO:0040002,GO:0040008,GO:0040009,GO:0040010,GO:0040019,GO:0040025,GO:0042134,GO:0042254,GO:0042255,GO:0042274,GO:0042303,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045137,GO:0045927,GO:0045995,GO:0046483,GO:0048513,GO:0048518,GO:0048569,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904,GO:2000026
EggNOG free text desc.small-subunit processome assembly
EggNOG OGsKOG0110@1,KOG0110@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size354
Cds size354
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930910.2906394-CDS-H-paniculata_contig743:599..7491622930910.2906394-CDS-H-paniculata_contig743:599..749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig743 600..749 +
1691481506.700179-CDS-H-paniculata_contig743:599..7491691481506.700179-CDS-H-paniculata_contig743:599..749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig743 600..749 +
1622930910.3078375-CDS-H-paniculata_contig743:1360..15641622930910.3078375-CDS-H-paniculata_contig743:1360..1564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig743 1361..1564 +
1691481506.7136233-CDS-H-paniculata_contig743:1360..15641691481506.7136233-CDS-H-paniculata_contig743:1360..1564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig743 1361..1564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig743.15410.1prot_H-paniculata_contig743.15410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig743 600..1564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig743.15410.1

>prot_H-paniculata_contig743.15410.1 ID=prot_H-paniculata_contig743.15410.1|Name=mRNA_H-paniculata_contig743.15410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MATFVIPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQ
EAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRS
AKRLKSGADDFDEMDGL*
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mRNA from alignment at H-paniculata_contig743:600..1564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig743.15410.1 ID=mRNA_H-paniculata_contig743.15410.1|Name=mRNA_H-paniculata_contig743.15410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=965bp|location=Sequence derived from alignment at H-paniculata_contig743:600..1564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACTTTTGTGATTCCAACCCAGGCCACGGCGAAAGAGTTGCGGGA
GTTGTTCTCGACCTTTGGTCAGTTGAAGCGCGTGCGTATGCCCAAGAAGT
TTGACGGGGGGCACCGAGGATTCGCGTTCATCGACTTTCTGACTCCGCAG
GTATGAGTATCGTTTTCGCAGTGAATGCCCGTGATGTAACCTTGCGAATC
TAGATGTGTGAAGACTCACAGTGGGCAGGCAACCTGTTCAGTTTCAACTG
GCGAAGTTTGTTGATGGTTCTTTGGTTTTGGCGGCTTTATCATTGTACAC
ACTGTATAGAAAATAGCTTACTGGTGAGTTGCTTTCTGTACAAGAGTTAA
TTGTAAGTTCGAATTTTTTGCTGGGTTCAAAGGAACTGCAAGCTAGTGTG
TTTGGTCTATACTGTATCGATCTCGCGGTGCAGGATAGCGCGTGTTCATG
CGATCCATGCAATTGCTTTAGTATCAAGCGGGAGTTGTCAGCTGTCACTA
ACTTTCGTTTGTTTTTTTTAAACCGCGGAAGGCTGAGGCAAAAACCTTTA
CCGATGCTTCCATACTTTAGTATTTACCAAAGTATACTAACTTTCGTGTG
CACATTCTGAACTCAGGCGAATACTTTCAGTTTTTTGTGAATATCATTTG
CAAATATTCGTCAATGTCCGGGGAGTGCAATGAACAGTCAACTGAATATG
TTCCTCGTACATATGGGGTACGTTCCATCGTCCAAAAACGGTCTTTTAAT
GCGCGTTTCAGGAAGCGATGAACGCCAAGATTTCGCTCGAGTCCACTCAC
TTTTACGGTCGACATCTTGTAGGGGAATGGGCGGAAGACAAAGATGACGT
GGACACGTTGAGAGCAAAAGCAGCGAGGGACATACACAGCCCCGGTGCCG
GCAATCGATCAGCGAAGCGACTGAAGAGCGGGGCAGATGATTTTGATGAA
ATGGACGGTTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig743:600..1564+

>mRNA_H-paniculata_contig743.15410.1 ID=mRNA_H-paniculata_contig743.15410.1|Name=mRNA_H-paniculata_contig743.15410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig743:600..1564+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACTTTTGTGATTCCAACCCAGGCCACGGCGAAAGAGTTGCGGGA
GTTGTTCTCGACCTTTGGTCAGTTGAAGCGCGTGCGTATGCCCAAGAAGT
TTGACGGGGGGCACCGAGGATTCGCGTTCATCGACTTTCTGACTCCGCAG
ATGGCTACTTTTGTGATTCCAACCCAGGCCACGGCGAAAGAGTTGCGGGA
GTTGTTCTCGACCTTTGGTCAGTTGAAGCGCGTGCGTATGCCCAAGAAGT
TTGACGGGGGGCACCGAGGATTCGCGTTCATCGACTTTCTGACTCCGCAG
GAAGCGATGAACGCCAAGATTTCGCTCGAGTCCACTCACTTTTACGGTCG
ACATCTTGTAGGGGAATGGGCGGAAGACAAAGATGACGTGGACACGTTGA
GAGCAAAAGCAGCGAGGGACATACACAGCCCCGGTGCCGGCAATCGATCA
GCGAAGCGACTGAAGAGCGGGGCAGATGATTTTGATGAAATGGACGGTTT
GTAGGAAGCGATGAACGCCAAGATTTCGCTCGAGTCCACTCACTTTTACG
GTCGACATCTTGTAGGGGAATGGGCGGAAGACAAAGATGACGTGGACACG
TTGAGAGCAAAAGCAGCGAGGGACATACACAGCCCCGGTGCCGGCAATCG
ATCAGCGAAGCGACTGAAGAGCGGGGCAGATGATTTTGATGAAATGGACG
GTTTGTAG
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