prot_H-paniculata_contig743.15410.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig743.15410.1
Unique Name	prot_H-paniculata_contig743.15410.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	118

Homology

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: D8LH81_ECTSI (RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH81_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.490e-48
Identity = 87/113 (76.99%), Postives = 95/113 (84.07%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLK--SGADDFDEMDG 116
            IP QATAKE+REL S+FGQLKRVR+PKKFDGGHRGFAF+DFLT QEAM AK SLESTHFYGRHLVGEWAED +D+DTLRAKAARD+  P  G R AKR K  S  DDF +MDG
Sbjct:  763 IPFQATAKEIRELCSSFGQLKRVRLPKKFDGGHRGFAFVDFLTAQEAMGAKKSLESTHFYGRHLVGEWAEDGEDMDTLRAKAARDLRGPSNGGRPAKRQKAASSGDDFADMDG 875

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A1W0A677_9STRA (RNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A677_9STRA)

HSP 1 Score: 139 bits (351), Expect = 5.230e-36
Identity = 69/101 (68.32%), Postives = 80/101 (79.21%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKS 106
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  SL S+H YGRHLV EWAED DD+DTLRAKA+RD+ S   G R+AK+LKS
Sbjct: 1405 IAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWAEDADDIDTLRAKASRDLASIEDGQRAAKKLKS 1505

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A1V9YGD5_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.880e-36
Identity = 72/110 (65.45%), Postives = 85/110 (77.27%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 115
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  SL S+H YGRHLV EWAED +D+DTLRAKA RD+ S   G+R+AK+LKS  D  D+MD
Sbjct:  696 IAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWAEDAEDLDTLRAKAGRDLASIEDGHRAAKKLKS-KDVEDDMD 804

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A024UIF0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UIF0_9STRA)

HSP 1 Score: 138 bits (347), Expect = 1.670e-35
Identity = 69/108 (63.89%), Postives = 86/108 (79.63%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDE 113
            I  +AT K++RELF+ FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD++TLRAKA+RD++S   G R+AKR K+ ADD ++
Sbjct:  701 IAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEATSAFAALSSSHLYGRHLVLEWAEDADDLETLRAKASRDLNSIQDGQRAAKRRKN-ADDMED 807

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A485LS48_9STRA (Aste57867_25042 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS48_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.270e-35
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 115
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAF++FLT  EA +A  +L S+H YGRHLV EWAED DD++TLRAKA+RD+ S   G R+AKR K+  D+ D+ +
Sbjct:  695 IAFEATVKDVRELFGAFGQLKMVRMPKKFDGKHRGFAFVEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLETLRAKASRDLASIEDGQRAAKRRKNADDEEDDQE 804

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A0P1AX43_PLAHL (Rna recognition motif-containing family protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AX43_PLAHL)

HSP 1 Score: 137 bits (345), Expect = 3.120e-35
Identity = 68/107 (63.55%), Postives = 81/107 (75.70%), Query Frame = 0

Query:    9 QATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 115
            +AT+ E+RELF  FGQLKRVRMPKKFDG HRGFAF++FLT QEA NA  +L S+H YGRHLV EWAED DD+DTLRAKA+RD+ +     R  KR+K   +D D  D
Sbjct:  705 EATSNEIRELFGAFGQLKRVRMPKKFDGKHRGFAFVEFLTDQEAQNAFSALASSHLYGRHLVLEWAEDADDIDTLRAKASRDLTAINDSERR-KRMKRQKEDIDNDD 810

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A067CYA7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYA7_SAPPC)

HSP 1 Score: 136 bits (342), Expect = 7.840e-35
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKS 106
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  SL S+H YGRHLV EWA+D DD++TLRAKA+RD+ S   G R+AK+LKS
Sbjct:  687 IAFEATIKDIRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFASLASSHLYGRHLVLEWADDADDMETLRAKASRDLASIEDGQRAAKKLKS 787

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A3L6UUB8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UUB8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.340e-34
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKR 103
            I  +AT K++RELF+ FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD+DTLRAKA+RD++S    +RS  R
Sbjct:  233 IAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLDTLRAKASRDLNSIQGKDRSIVR 330

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A3R7WET7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WET7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.340e-34
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKR 103
            I  +AT K++RELF+ FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD+DTLRAKA+RD++S    +RS  R
Sbjct:  233 IAFEATVKDVRELFAAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLDTLRAKASRDLNSIQGKDRSIVR 330

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BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Match: A0A6G0WZD7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZD7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.710e-34
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 0

Query:    6 IPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQEAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRSAKRLKSGADDFDEMD 115
            I  +AT K++RELF  FGQLK VRMPKKFDG HRGFAFI+FLT  EA +A  +L S+H YGRHLV EWAED DD+++LR KA+RD+ S   G R+AKR K   D+ D+ +
Sbjct:  675 IAFEATVKDVRELFGAFGQLKTVRMPKKFDGKHRGFAFIEFLTEAEAKSAFAALSSSHLYGRHLVLEWAEDADDLESLRVKASRDLASIQDGQRAAKRRKQADDEEDDQE 784

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig743.15410.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LH81_ECTSI	1.490e-48	76.99	RNA binding protein n=2 Tax=Ectocarpus TaxID=2879 ...	[more]
A0A1W0A677_9STRA	5.230e-36	68.32	RNA-binding protein n=1 Tax=Thraustotheca clavata ...	[more]
A0A1V9YGD5_9STRA	8.880e-36	65.45	RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=...	[more]
A0A024UIF0_9STRA	1.670e-35	63.89	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A485LS48_9STRA	2.270e-35	60.91	Aste57867_25042 protein n=1 Tax=Aphanomyces stella...	[more]
A0A0P1AX43_PLAHL	3.120e-35	63.55	Rna recognition motif-containing family protein n=...	[more]
A0A067CYA7_SAPPC	7.840e-35	66.34	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A3L6UUB8_9STRA	2.340e-34	65.31	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]
A0A3R7WET7_9STRA	2.340e-34	65.31	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]
A0A6G0WZD7_9STRA	2.710e-34	60.00	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 2..72 e-value: 4.6E-9 score: 46.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 6..69 e-value: 5.1E-13 score: 48.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..76 score: 13.737
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..94 e-value: 2.6E-21 score: 77.7
None	No IPR available	PANTHER	PTHR23147:SF48	RNA-BINDING PROTEIN 19-RELATED	coord: 6..103
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 6..103
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..81

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig743	contig	H-paniculata_contig743:600..1564 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig743.15410.1	mRNA_H-paniculata_contig743.15410.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig743 600..1564 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig743.15410.1 ID=prot_H-paniculata_contig743.15410.1|Name=mRNA_H-paniculata_contig743.15410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MATFVIPTQATAKELRELFSTFGQLKRVRMPKKFDGGHRGFAFIDFLTPQ
EAMNAKISLESTHFYGRHLVGEWAEDKDDVDTLRAKAARDIHSPGAGNRS
AKRLKSGADDFDEMDGL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf