prot_H-paniculata_contig7402.15378.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7402.15378.1
Unique Nameprot_H-paniculata_contig7402.15378.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length195
Homology
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.900e-45
Identity = 99/189 (52.38%), Postives = 115/189 (60.85%), Query Frame = 0
Query:   17 DQGVDDSVRLHVGGLPRGTQPEALSTLIARVLPEGTI-PTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEEVQASAQAVLSEMAAVAKD-PAKRKSPPV--------LRLRRRPGERIMLVDTMPIPWTKPAHFSQPPRAKRSRNDTKEAG 195
            ++G D  VRLHVGGL RG  P  L+ LIAR LP GT  PTAEIM+D STGIERGFGYV++P G GVKAG ERAI+ Y+G RW+G +IRVG AKGDYL+RLKAEW  A                     P+K   PP         LRLRRRPGER++LVD  PI W KP+        KR     +E G
Sbjct:    4 ERGDDAGVRLHVGGLARGVDPNELAALIARTLPSGTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEWDAAAXXXXXXXXXXXXXXXXXXXXPSKTPVPPAVAYKARPFLRLRRRPGERVVLVDPTPIAWAKPSRKDPRTWNKREEEGGEEGG 192          
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.330e-33
Identity = 75/136 (55.15%), Postives = 89/136 (65.44%), Query Frame = 0
Query:   59 MKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEE----------VQASAQAVLSEMAAVAKDPAKRKSPPVLRLRRRPGERIMLVDTMPIPWTKPAHFSQPPRA 184
            M+D STGIERGFGYV++P G GVKAG ERAI+ YNG RW+G +IRVG AKGDYL+RLKAEW  A +            A   +     AAVA      K+ P LRLRRRPGER++LVD  PI W KP+   + PRA
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKKXXXXXXXXXXXAGGPSKTPVPAAVAY-----KARPFLRLRRRPGERVVLVDPTPIAWAKPSR--KDPRA 129          
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 73.9 bits (180), Expect = 6.720e-12
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 0
Query:   24 VRLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIM-KDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEEVQASA 129
            +RL VGGLP    PE L    AR  P G +  +EI+ + +  G  RGFGYV +      +A + +  +VYNGT+WRG R+RV  A+  +L+RLKAEW    E Q+ A
Sbjct:   31 IRLFVGGLPADVTPEELQ---ARFQPFGKVVGSEIVPQKEDAGTCRGFGYVDLEPVS--EASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEWASQNEPQSEA 132          
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A433PR27_9FUNG (RRM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PR27_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 1.640e-5
Identity = 32/100 (32.00%), Postives = 55/100 (55.00%), Query Frame = 0
Query:   25 RLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEE 124
            R+++GGL         + L  R  P G +   ++ ++  TG  RGF ++T+    GV        ++YNGT+W+G+ +++  AK DY ERL+ EW+  +E
Sbjct:   24 RVYIGGLNNDV---TAAELEERFRPFGNVANVDVARNTLTGHCRGFAHMTMNTTVGV--------NLYNGTKWKGTALKIEDAKSDYRERLRKEWENQKE 112          
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A0D7AJ20_9AGAR (RRM domain-containing protein n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AJ20_9AGAR)

HSP 1 Score: 55.1 bits (131), Expect = 1.680e-5
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = 0
Query:   25 RLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKD-QSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEA 122
            RLHV GL  G   + LS  ++     GT+   +   +    G  R FGYVT+       A + + ++V +G+ W+G+++R+G+AK DY ERL+ E ++A
Sbjct:    8 RLHVSGLTPGLTKDDLSKRLSAF---GTVKALDGFGELDGLGSPRNFGYVTIET---TSANLAKCLNVLSGSTWKGAKLRIGLAKPDYSERLQREREDA 100          
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A2P4XL18_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XL18_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.780e-5
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 0
Query:   23 SVRLHVGGLPRGTQPEALSTLIARVLPEGT---IPTAEIMKDQ-------STGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEE 124
            S+R++VGGLP   + + L     R +   T   +   E+ K +       S G  RGF Y+T+ +G   +   ER    +N T+WRGS ++V +AK  +  +L+ EW+E EE
Sbjct:    3 SIRVYVGGLPLDAKNQELRERFGRFVSNATDCQLTDVELPKPKRMGNVVASAGTSRGFAYLTL-QGADAETESERLQKTFNRTKWRGSVLKVHLAKPHFKLKLQQEWEELEE 113          
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A2T9YMR7_9FUNG (RRM domain-containing protein n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9YMR7_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 5.670e-5
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0
Query:   16 KDQGVDDSVRLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAE 118
            K+   + +VR++VGGLP  T  + L    A+  P G I    + K+      RG GY+T+   +       +  ++YNG +W+GS ++V VAK  YL+R+  E
Sbjct:   21 KNLNEEITVRVYVGGLPDNTTSKELE---AKFKPFGEIDNVNMPKNHPGTKPRGIGYLTL---KSTLHKWSKCQNLYNGAKWKGSLLKVAVAKEHYLDRINRE 117          
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A2T9YTE1_9FUNG (RRM domain-containing protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YTE1_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 9.920e-5
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0
Query:   22 DSVRLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAE 118
            ++ RL++ GL      E    L++R    GTI    I  D      +GFG++T+      K   ++ IS+YNGT+W+GS + +  AK DYLE+LK E
Sbjct:   20 ETYRLYIKGLHDAITCE---DLVSRFSSFGTIENPFIPLDSIDNKPKGFGFITLIS---TKKQYQKCISLYNGTKWKGSTMLLEQAKQDYLEKLKNE 110          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FS94_ECTSI1.900e-4552.38RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVR0_9PHAE6.330e-3355.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1HXN5_KLENI6.720e-1242.99Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
A0A433PR27_9FUNG1.640e-532.00RRM domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A0D7AJ20_9AGAR1.680e-534.34RRM domain-containing protein n=1 Tax=Fistulina he... [more]
A0A2P4XL18_9STRA1.780e-533.04RRM domain-containing protein n=2 Tax=Phytophthora... [more]
A0A2T9YMR7_9FUNG5.670e-533.01RRM domain-containing protein n=1 Tax=Furculomyces... [more]
A0A2T9YTE1_9FUNG9.920e-536.08RRM domain-containing protein n=1 Tax=Smittium sim... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 112..132
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 25..105
e-value: 9.3E-5
score: 31.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 27..102
e-value: 2.7E-4
score: 20.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 24..109
score: 11.827
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 13..112
e-value: 2.2E-12
score: 49.0
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 20..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7402contigH-paniculata_contig7402:4040..8191 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7402.15378.1mRNA_H-paniculata_contig7402.15378.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7402 4040..8192 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7402.15378.1 ID=prot_H-paniculata_contig7402.15378.1|Name=mRNA_H-paniculata_contig7402.15378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
AKEPACTREGVMAVEKDQGVDDSVRLHVGGLPRGTQPEALSTLIARVLPE
GTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGS
RIRVGVAKGDYLERLKAEWKEAEEVQASAQAVLSEMAAVAKDPAKRKSPP
VLRLRRRPGERIMLVDTMPIPWTKPAHFSQPPRAKRSRNDTKEAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf