mRNA_H-paniculata_contig7402.15378.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7402.15378.1
Unique NamemRNA_H-paniculata_contig7402.15378.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 1.900e-45
Identity = 99/189 (52.38%), Postives = 115/189 (60.85%), Query Frame = 1 
Query:   49 DQGVDDSVRLHVGGLPRGTQPEALSTLIARVLPEGTI-PTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEEVQASAQAVLSEMAAVAKD-PAKRKSPPV--------LRLRRRPGERIMLVDTMPIPWTKPAHFSQPPRAKRSRNDTKEAG 585
            ++G D  VRLHVGGL RG  P  L+ LIAR LP GT  PTAEIM+D STGIERGFGYV++P G GVKAG ERAI+ Y+G RW+G +IRVG AKGDYL+RLKAEW  A                     P+K   PP         LRLRRRPGER++LVD  PI W KP+        KR     +E G
Sbjct:    4 ERGDDAGVRLHVGGLARGVDPNELAALIARTLPSGTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEWDAAAXXXXXXXXXXXXXXXXXXXXPSKTPVPPAVAYKARPFLRLRRRPGERVVLVDPTPIAWAKPSRKDPRTWNKREEEGGEEGG 192
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.330e-33
Identity = 75/136 (55.15%), Postives = 89/136 (65.44%), Query Frame = 1 
Query:  175 MKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEE----------VQASAQAVLSEMAAVAKDPAKRKSPPVLRLRRRPGERIMLVDTMPIPWTKPAHFSQPPRA 552
            M+D STGIERGFGYV++P G GVKAG ERAI+ YNG RW+G +IRVG AKGDYL+RLKAEW  A +            A   +     AAVA      K+ P LRLRRRPGER++LVD  PI W KP+   + PRA
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKKXXXXXXXXXXXAGGPSKTPVPAAVAY-----KARPFLRLRRRPGERVVLVDPTPIAWAKPSR--KDPRA 129
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 73.9 bits (180), Expect = 6.720e-12
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:   70 VRLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIM-KDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEEVQASA 387
            +RL VGGLP    PE L    AR  P G +  +EI+ + +  G  RGFGYV +      +A + +  +VYNGT+WRG R+RV  A+  +L+RLKAEW    E Q+ A
Sbjct:   31 IRLFVGGLPADVTPEELQ---ARFQPFGKVVGSEIVPQKEDAGTCRGFGYVDLEPVS--EASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEWASQNEPQSEA 132
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A433PR27_9FUNG (RRM domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PR27_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 1.640e-5
Identity = 32/100 (32.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   73 RLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEE 372
            R+++GGL         + L  R  P G +   ++ ++  TG  RGF ++T+    GV        ++YNGT+W+G+ +++  AK DY ERL+ EW+  +E
Sbjct:   24 RVYIGGLNNDV---TAAELEERFRPFGNVANVDVARNTLTGHCRGFAHMTMNTTVGV--------NLYNGTKWKGTALKIEDAKSDYRERLRKEWENQKE 112
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A0D7AJ20_9AGAR (RRM domain-containing protein n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AJ20_9AGAR)

HSP 1 Score: 55.1 bits (131), Expect = 1.680e-5
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:   73 RLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKD-QSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEA 366
            RLHV GL  G   + LS  ++     GT+   +   +    G  R FGYVT+       A + + ++V +G+ W+G+++R+G+AK DY ERL+ E ++A
Sbjct:    8 RLHVSGLTPGLTKDDLSKRLSAF---GTVKALDGFGELDGLGSPRNFGYVTIET---TSANLAKCLNVLSGSTWKGAKLRIGLAKPDYSERLQREREDA 100
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A2P4XL18_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XL18_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.780e-5
Identity = 37/112 (33.04%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:   67 SVRLHVGGLPRGTQPEALSTLIARVLPEGT---IPTAEIMKDQ-------STGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAEWKEAEE 372
            S+R++VGGLP   + + L     R +   T   +   E+ K +       S G  RGF Y+T+ +G   +   ER    +N T+WRGS ++V +AK  +  +L+ EW+E EE
Sbjct:    3 SIRVYVGGLPLDAKNQELRERFGRFVSNATDCQLTDVELPKPKRMGNVVASAGTSRGFAYLTL-QGADAETESERLQKTFNRTKWRGSVLKVHLAKPHFKLKLQQEWEELEE 113
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A2T9YMR7_9FUNG (RRM domain-containing protein n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9YMR7_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 5.670e-5
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:   46 KDQGVDDSVRLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAE 354
            K+   + +VR++VGGLP  T  + L    A+  P G I    + K+      RG GY+T+   +       +  ++YNG +W+GS ++V VAK  YL+R+  E
Sbjct:   21 KNLNEEITVRVYVGGLPDNTTSKELE---AKFKPFGEIDNVNMPKNHPGTKPRGIGYLTL---KSTLHKWSKCQNLYNGAKWKGSLLKVAVAKEHYLDRINRE 117
[Close]
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Match: A0A2T9YTE1_9FUNG (RRM domain-containing protein n=1 Tax=Smittium simulii TaxID=133385 RepID=A0A2T9YTE1_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 9.920e-5
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:   64 DSVRLHVGGLPRGTQPEALSTLIARVLPEGTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGSRIRVGVAKGDYLERLKAE 354
            ++ RL++ GL      E    L++R    GTI    I  D      +GFG++T+      K   ++ IS+YNGT+W+GS + +  AK DYLE+LK E
Sbjct:   20 ETYRLYIKGLHDAITCE---DLVSRFSSFGTIENPFIPLDSIDNKPKGFGFITLIS---TKKQYQKCISLYNGTKWKGSTMLLEQAKQDYLEKLKNE 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7402.15378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FS94_ECTSI1.900e-4552.38RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVR0_9PHAE6.330e-3355.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1HXN5_KLENI6.720e-1242.99Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
A0A433PR27_9FUNG1.640e-532.00RRM domain-containing protein n=1 Tax=Endogone sp.... [more]
A0A0D7AJ20_9AGAR1.680e-534.34RRM domain-containing protein n=1 Tax=Fistulina he... [more]
A0A2P4XL18_9STRA1.780e-533.04RRM domain-containing protein n=2 Tax=Phytophthora... [more]
A0A2T9YMR7_9FUNG5.670e-533.01RRM domain-containing protein n=1 Tax=Furculomyces... [more]
A0A2T9YTE1_9FUNG9.920e-536.08RRM domain-containing protein n=1 Tax=Smittium sim... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7402contigH-paniculata_contig7402:4040..8192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog42099.EPrPV00000023544
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nucleolar protein 8 (Nucleolar protein Nop132).. Source PGD
EggNOG OGs1MABP@121069,2C9NB@1,2R9D5@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons4
Model size586
Cds size585
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7402.15378.1prot_H-paniculata_contig7402.15378.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7402 4040..8191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930906.6720479-CDS-H-paniculata_contig7402:4039..41211622930906.6720479-CDS-H-paniculata_contig7402:4039..4121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 4040..4121 +
1691481505.0418994-CDS-H-paniculata_contig7402:4039..41211691481505.0418994-CDS-H-paniculata_contig7402:4039..4121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 4040..4121 +
1622930906.690099-CDS-H-paniculata_contig7402:5777..59821622930906.690099-CDS-H-paniculata_contig7402:5777..5982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 5778..5982 +
1691481505.0510666-CDS-H-paniculata_contig7402:5777..59821691481505.0510666-CDS-H-paniculata_contig7402:5777..5982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 5778..5982 +
1622930906.715102-CDS-H-paniculata_contig7402:7223..74111622930906.715102-CDS-H-paniculata_contig7402:7223..7411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 7224..7411 +
1691481505.0619898-CDS-H-paniculata_contig7402:7223..74111691481505.0619898-CDS-H-paniculata_contig7402:7223..7411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 7224..7411 +
1622930906.7320685-CDS-H-paniculata_contig7402:8081..81911622930906.7320685-CDS-H-paniculata_contig7402:8081..8191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 8082..8191 +
1691481505.0696914-CDS-H-paniculata_contig7402:8081..81911691481505.0696914-CDS-H-paniculata_contig7402:8081..8191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7402 8082..8191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7402.15378.1

>prot_H-paniculata_contig7402.15378.1 ID=prot_H-paniculata_contig7402.15378.1|Name=mRNA_H-paniculata_contig7402.15378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
AKEPACTREGVMAVEKDQGVDDSVRLHVGGLPRGTQPEALSTLIARVLPE
GTIPTAEIMKDQSTGIERGFGYVTVPRGRGVKAGVERAISVYNGTRWRGS
RIRVGVAKGDYLERLKAEWKEAEEVQASAQAVLSEMAAVAKDPAKRKSPP
VLRLRRRPGERIMLVDTMPIPWTKPAHFSQPPRAKRSRNDTKEAG
back to top

mRNA from alignment at H-paniculata_contig7402:4040..8192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7402.15378.1 ID=mRNA_H-paniculata_contig7402.15378.1|Name=mRNA_H-paniculata_contig7402.15378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4153bp|location=Sequence derived from alignment at H-paniculata_contig7402:4040..8192+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAGGAGCCAGCTTGTACGCGTGAGGGCGTGATGGCCGTTGAGAAGGA
CCAAGGAGTAGATGACTCAGTTAGGCTCCATGGTAAGCGGGAAAAAATTA
CTGCAGGCAGTGCTTACAGTGAGAGAGAGAGAGAGAGACCTCGGCAAGCC
AAGAGAAGAACATATCCACTGGAAGCCATATGGTAGCTCTTGAACACTGC
TATAGTACTGCCTTGACTGTTTGCATACCTCAGTATTCAGTCTGTATTTT
ATTACTGTAATGTCCCCGTAGAGCAGACTCACTGCTGACTCAATGCTGAA
CACAACGGGTCTGGTTAAAGGTAGCCAGTTGAGAAGCGAGTGTGCCAGGT
TAGCCGTTTTGCAAGTGGCCAGTCGCCTTGTCATCAAAATATTTCACATC
TTGGACGAAGGTTTGATTTTCAAGTCATGAACACCCAACCGAACCGTCAT
CCCTTCATGCTCAAAATTAGAAATATCTGTGGAGGTGCGCTGGTACTCAA
AAGTCGAACACTCCTCGAAGGTGTGCAGGATATCCATGCTATCAGTTTGT
GGGTTTCGGAAAGCAACAGGTATCCGCGTGCTGGTATAGTTCCAAAACCT
GCGACATCCTTCATAGACGGATGAAGGACCTTGGTCTGAGCTGTGAAATA
TTTGAAACGCGAAGACTACCCAAGACAAGGAAAAAGGCGAGGCATACTGG
GGGGCTACTACTTACATAAGATGTAACTGTCTGTAGGGCAATTTCATCAC
CGTTACGCTTTCACGTACACCGCGAAGTCTTTGACTCGGAACTTGGAATC
ATCTGTCAATTAGAAGTACCCAACTCCTACTGGTTATTTTATGTCATAAC
GACATACTCCGCGTTGTTCATGTGTAAAACCGAGTAGGCTGCAACTACTG
AAAATCCTTTTGGAACATTGTAGCTCTGTCTATTTTCGACAGCAAGATTC
GATTTTTCAAAATACTAGAGTGAAGAGTCTGAAATGTGTTCGGAAATCAT
GATCACCGCTACCGTACGCGTACCCGTATACCTTCTTCCTCTCTTCCATT
TGTGAAGTCGGTTGTGTTTGGTAAACTTTATCTCCAGATGTAAGACTGTT
TAGGGGCTGCAGTTGGAATCGTTGAAAAGTTGAAGTTTGGTAGACCCATA
TTTGATATTCCGAAATGCATTGGCCGCTCAAGGTTCGGTTAGACTAATTT
CGACCGTTTTCACATTTTTGATTCCAATTTTCACGTTTTTCCATTGGAAA
AATACGACAAAAGGCAAATTATGGCCTTCTGTAGGCTGACATTTTTTTTT
GCGCCGCGCGTGCTCCTCATGAATTTCGCGGATTCCCGTGAAATTTTTGG
AATCAACCCCCAAAACATGCTGGATTATAACTAGAAAAATTAAGTCTACG
TACCTCTCTATATGCTCAACTGACTGGCTCAGAGGAAATATGGTTTTAAG
CAATACAGATACGTGTACTAGTGTCAATAAATATTTCAAAACGCGTCGAT
TGCTGCCCTCGCCTAAGAGTAGGGCTACCCTCGTACACTGTATGTACTTG
TGCAGGATCTGGTACCGAAAAACAATGCCTGCGCGTGGTCGTCCATAGTC
ACAAAGCAATGGTACATGCAACGAAGTTCGTCCGGATCTCCTCCCCGTAA
GTGCAGCTTCCTAGCTTGAGACGGTACTTCGCCCCCCTTTCATTCCTGTC
TGCTCTACCTGCCTTCTACTTTTTGTCATACCCCACAGTCGGAGGGCTGC
CGCGTGGGACACAACCCGAAGCGTTGTCCACCCTGATTGCCCGAGTCCTG
CCCGAGGGCACCATTCCAACTGCCGAGATCATGAAAGATCAGTCTACCGG
CATTGAAAGGGGGTTTGGTTATGTGACGGTGCCCCGCGGGAGGGGTGTCA
AGGCCGGGGTCGAGCGTGCTATATCCGTGTACAACGGGACCAGGTGAGTT
CTTGCACTTGGAGGGACGGAGGTGTACCCGTGTTTTACACGGTACAGTTC
GTTGGACCATCGACCACGCGTGGTCGAGAAGGTGGTACATTGTTCCTGCC
GGGGAGATCTCCGATTGGTTCACTCCTATATTTCGTTGCCCAATGTGGCT
CAAAGAGGTATTTTACCGTGTATCCTATCTACATCAACCCTCGCGTTTTA
GAACCAATCTATACTTCTCAGAGTCATTCGGGGGGGGGGGAGGGGTCCTC
ACGTTTTGTCCACACCTTCGCGATTGGATCATTTCACCACGTATCCTGGA
GAGGATACGCTTACAGGTATTATCCTATGGATGTAATTTGGGTATTTCGC
CGATCTATAGCTTGAACACTGAAGGATATTTTCACATGCTAATCGTGTTG
CATCCTTTTGATTGCGGAACCGTTAAAAGGTTCGGAAGGCAAAAAACATA
GGATATTGAGATATGTGCGGACTACTGACTTCGCAGGATTTTCTTTTTGT
TGTGCCATGGTCGGGACAAATGTGTACTCTACTACATCAAAAGTCTTATT
GACCCGAGTCCGCGGCTTATCTTTCCAAAATACAAAGAAACAAACAAGCC
TCCTTCCCTTCTGTACCCCGCAATACGAGGTGTTCCTTCACCCCGCCGAT
GCACCTGGATTCTATCCTCCAATTCGTTTGCCTCCCCCCCCCCCCCCGCC
CTCAAACTAATTCCTTGTGCGCATGGCGGAGGCCTCGACTAACCGTCTGA
AATGCCAGAATTGAATAACACCGCGAGTTCCATCAACCCTTTGGCCGCTA
ATAAGAGAACCCATGTGGGAGTCTTCACACCTGATATGGAGGAGCGGTGA
AAGGCTCAGCTATGACCCAACCTTGATGCCCAAATCGAATCCCATAATTA
GCTAACCGCCGAACCTCGATCATTTTCCCCCCGGATTTCGTAGTTAGCCA
ACCTCCAGACGTCTATCCCCGCTGGGGATGGAGGTTGATGAGGGCTACTG
TCGGACCTTGATCCGACTGTTCCTTCGTACGAGGTGTGGAATTTTTCTTG
TGGGGGGCACGACTATATTTACTTAATATTCTCAAATGAGAAAAATCTTT
CATGAATAATCTGGATAAACAACGAAGACCGATCAAAAGGCGTTGCTAGC
TTGCAATGAATTTTGACGGAAATCCGGAGCGACGTTAGTATGCAAATGTT
TGGTTGTTTGTTTTGTCCTGACTTGCCCATGCAGGTGGCGAGGAAGCCGT
ATAAGGGTCGGCGTTGCCAAGGGAGATTATCTCGAGAGGTTGAAGGCTGA
GTGGAAGGAGGCCGAAGAAGTGCAGGCTTCGGCCCAGGCAGTCCTTTCAG
AAATGGCGGCGGTGGCGAAGGATCCCGCCAAGCGCAAGTCGCCGCCGGTA
CTTCGGCTCCGACGCAGACCAGGCGAGTTGGATACTATGAGTTTGTTTGC
GGTTGTTGTTGTAGAGTGTGTTTGAAAGGTCGCTTCAAGTGTACCCTGTG
TGTGAACAATCTGGCGCTCTTAATTCAGTCGGGCTGTGGAATTAGTCATT
CAGCGGGTGCCCCGTTCCCCCCTGCCCTCGCCTGGAGTAAGAGGAAAACC
CTTGAAGAGCGTGCATCGGCTGTGAAACGCAATGCGAAATTGGTTGCCTA
GATATCGCATCAGTGCGTTCTCGAAGTTGGTGTGTATTGTTGAAGGATTT
TACGACAGAACTTACGTGTGGTAGGGTCGGTTGGAAAATTCGCGGTGCGA
TTCTGTGCCGTGTATTAACAATACCGCATGGTCGTAGCACCGGGGTTTGC
AGCAGGGTCATCGATAGAAGTGGTGGCACATCGAATTGCTTGTAATGCAT
GGTTCGAGCTGTCAAGTGATGTGGAAACGAAATGAAACGAGAATTTTCGG
GGCTTCAGCAGACCTTGCAGCACGAGCGACCAATCATAAGAACATGGTCC
TGGTGACTTATGAAATACCTTTTCAATATTTGGTCGAGATTCCGTCACGT
GTTCACGCCAAGATTTCTCAATCCCCTCTTCCCTTGCACACCGCTTATGC
TCACGTATCCTGCGTTTTTCATGGTTTTCTCCACAACTTCAGGGGAAAGA
ATTATGCTCGTAGACACTATGCCAATCCCTTGGACAAAGCCAGCCCATTT
TTCGCAGCCACCCAGGGCCAAACGTTCGAGGAACGATACTAAAGAGGCGG
GAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7402:4040..8192+

>mRNA_H-paniculata_contig7402.15378.1 ID=mRNA_H-paniculata_contig7402.15378.1|Name=mRNA_H-paniculata_contig7402.15378.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig7402:4040..8192+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTAAGGAGCCAGCTTGTACGCGTGAGGGCGTGATGGCCGTTGAGAAGGA
CCAAGGAGTAGATGACTCAGTTAGGCTCCATGGCTAAGGAGCCAGCTTGT
ACGCGTGAGGGCGTGATGGCCGTTGAGAAGGACCAAGGAGTAGATGACTC
AGTTAGGCTCCATGTCGGAGGGCTGCCGCGTGGGACACAACCCGAAGCGT
TGTCCACCCTGATTGCCCGAGTCCTGCCCGAGGGCACCATTCCAACTGCC
GAGATCATGAAAGATCAGTCTACCGGCATTGAAAGGGGGTTTGGTTATGT
GACGGTGCCCCGCGGGAGGGGTGTCAAGGCCGGGGTCGAGCGTGCTATAT
CCGTGTACAACGGGACCAGTCGGAGGGCTGCCGCGTGGGACACAACCCGA
AGCGTTGTCCACCCTGATTGCCCGAGTCCTGCCCGAGGGCACCATTCCAA
CTGCCGAGATCATGAAAGATCAGTCTACCGGCATTGAAAGGGGGTTTGGT
TATGTGACGGTGCCCCGCGGGAGGGGTGTCAAGGCCGGGGTCGAGCGTGC
TATATCCGTGTACAACGGGACCAGGTGGCGAGGAAGCCGTATAAGGGTCG
GCGTTGCCAAGGGAGATTATCTCGAGAGGTTGAAGGCTGAGTGGAAGGAG
GCCGAAGAAGTGCAGGCTTCGGCCCAGGCAGTCCTTTCAGAAATGGCGGC
GGTGGCGAAGGATCCCGCCAAGCGCAAGTCGCCGCCGGTACTTCGGCTCC
GACGCAGACCAGGTGGCGAGGAAGCCGTATAAGGGTCGGCGTTGCCAAGG
GAGATTATCTCGAGAGGTTGAAGGCTGAGTGGAAGGAGGCCGAAGAAGTG
CAGGCTTCGGCCCAGGCAGTCCTTTCAGAAATGGCGGCGGTGGCGAAGGA
TCCCGCCAAGCGCAAGTCGCCGCCGGTACTTCGGCTCCGACGCAGACCAG
GGGAAAGAATTATGCTCGTAGACACTATGCCAATCCCTTGGACAAAGCCA
GCCCATTTTTCGCAGCCACCCAGGGCCAAACGTTCGAGGAACGATACTAA
AGAGGCGGGAGGGAAAGAATTATGCTCGTAGACACTATGCCAATCCCTTG
GACAAAGCCAGCCCATTTTTCGCAGCCACCCAGGGCCAAACGTTCGAGGA
ACGATACTAAAGAGGCGGGA
back to top