mRNA_H-paniculata_contig7353.15325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7353.15325.1
Unique NamemRNA_H-paniculata_contig7353.15325.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7353.15325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7353contigH-paniculata_contig7353:1429..4393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue6e-11
Seed eggNOG ortholog2880.D7FT13
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Putative RNA methylase family UPF0020
EggNOG OGs2QTIB@2759,COG0116@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1213
Cds size861
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7353.15325.1prot_H-paniculata_contig7353.15325.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7353 1429..4041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930898.9885435-CDS-H-paniculata_contig7353:1428..19401622930898.9885435-CDS-H-paniculata_contig7353:1428..1940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7353 1429..1940 -
1691481501.801852-CDS-H-paniculata_contig7353:1428..19401691481501.801852-CDS-H-paniculata_contig7353:1428..1940Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7353 1429..1940 -
1622930899.031543-CDS-H-paniculata_contig7353:3692..40411622930899.031543-CDS-H-paniculata_contig7353:3692..4041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7353 3693..4041 -
1691481501.813192-CDS-H-paniculata_contig7353:3692..40411691481501.813192-CDS-H-paniculata_contig7353:3692..4041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7353 3693..4041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.0474737-UTR-H-paniculata_contig7353:4041..43931622930899.0474737-UTR-H-paniculata_contig7353:4041..4393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7353 4042..4393 -
1691481501.8229392-UTR-H-paniculata_contig7353:4041..43931691481501.8229392-UTR-H-paniculata_contig7353:4041..4393Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7353 4042..4393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7353.15325.1

>prot_H-paniculata_contig7353.15325.1 ID=prot_H-paniculata_contig7353.15325.1|Name=mRNA_H-paniculata_contig7353.15325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp
MLHRPDSYKMYFYLSPSCINFAERQRQMGWCTLLVSAIVPTVVGSFGVLP
APCAVTTAFGGQCRHSASLTISDFRHRRNLAETVAMGWTSAARPNRHRPR
IQELLSPLPAAVSNNGGEDDAAEAHPTMAAAEETARVKAETALRKLPPAE
LAGIQARLGLSDDLEGQDEIIHHAVPVLAAKILARQAAAAMATMAEAQPN
IRQQEVLSLESTAVDNKPRMSPAAATPNPRSPTNGYNDNYTPDSGMSGGY
SRDDEVAEGAGLPETRMARPRKEGSEREWVSVGGDGE
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mRNA from alignment at H-paniculata_contig7353:1429..4393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7353.15325.1 ID=mRNA_H-paniculata_contig7353.15325.1|Name=mRNA_H-paniculata_contig7353.15325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2965bp|location=Sequence derived from alignment at H-paniculata_contig7353:1429..4393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGATCAGTGGTCAATGGCCAAAGACCGGATCGTAGTGTAAGCAGAAT
CTTAGTACTGCTGCCACCGCCAGTCACTTTCCTTCACCCTCTTTCCCGCC
TTGGTTTCAATTGGTGAAGAACAGCTAGGCATTAATTGCTGATATTCACC
GCTCTGGCCATAGCTGTTCATTAATCTCGGACAACAGGATTGGCAGCGCG
CTCTCCGCTTGTTTACCCTCTCTCTTCTCCCTCCCCCCCCCTCTCTCTCT
CTTGCGCGAAAAAATGTCGATTTCCTTATCTCTGTCTGATCGATCCCATG
TCCATTTTTTTAAGAAGCTCGTTTTATAAAATAAAGCTTGTACAAACAAA
TCATGCTACACCGCCCTGATTCATACAAAATGTATTTTTATCTATCCCCA
AGTTGTATTAATTTCGCAGAACGTCAGAGGCAGATGGGCTGGTGTACCCT
CCTAGTGTCGGCGATTGTGCCGACAGTGGTGGGAAGCTTCGGAGTTCTTC
CGGCACCGTGCGCGGTCACAACCGCCTTCGGAGGGCAATGTCGCCACAGC
GCGTCGCTAACCATCTCTGATTTTCGGCATCGAAGGAACCTTGCAGAGAC
AGTAGCAATGGGATGGACCTCAGCGGCGCGACCGAATCGACATCGACCAC
GAATACAGGAATTGCTCTCGCCGCTGCCAGCTGCAGTTAGCAATAATGGT
GGTAAGTACTTTGCTCTTACAGTTTGCACACTTACTATACGAGTAAATTT
GAGAAAAAATAGTGGAGGCTTAGTGGTTTATATTTTAAAGGACAGACAGT
TGCTCAACCAATGCTTCTCGAGTAATGACCCCGCTTTAATTTCTGTGTTA
GTTGTGGATATGAAGAGATCTTGTTTCGGACTAGGTTGTATGTGAGCTGT
GAGGTCACGCCAAATAGGCGATTCTTAGGTGCTGTGCATCGCGTACTGGT
GCTCTCCTACACATGCAGTTTTTATCTGCTTTTCTTGAAGGGCGCATTTA
CAGCAACATGTGTAGGTGCTCTTTTGGACCAACTGCACTACTGTAGCCGG
CATACAATAGCGAGATGGGTCTTCTTACGTGAACGTTTAATACAGGAATC
AAAGGGTGTCCATTATTATCAATCAATACTAAATATTGCTGTAATTCAAT
AACGAATAGCGGCAACCCGCTGGACCCAGCTCGAAGGCCGCATCGCTCAA
CGTTGTTTTATGCACAGTCAGTATCACTAGGGCAACACCATTGAGAGATA
GATGGATAGAGGCGCCCGAACGGTGCGGGCGCTGCAATTAATAGTGGTGG
TAGTGTTGTTGGTGGTAGATGGTGCTTTTTTCCTGCTCCCCTGCTTTTGA
GGGATTTTTGAGGGATTTTTGAGGGGTGATGGGGGGTGATAGGGCGGGTG
GCGAGGGCACATGTGCCGCATGTCTTGGGCCGTGTATTAACACAGAAAAC
AATCGTGATAATGAAATTGTAAAAATTTGAAGTGTATGTGGTGGTCACCT
TAAAAGGGTTAATAATCACCCAACGTCTGTTGAGGACAGACAGTTACCAT
AATTTCCGCATTGGCGACACCGATAGATAACGAGTTTGCTTCTCGTTCTG
AAGGTCAGGGGGTTCGAACTCCAATACCGACACACCAAAGAGTTAAGCGC
TCACAAAATAACTCGCAACTATCGTGGGGGATGAAAACAGTAAGTGCAAA
ACGCATCTGAAGAAAGACATGTAACGCCTCGCTGTGCGCCCGGTCGGGTT
TCGGTTACCCCTAGACTGAAGTTTTCCGAAAGGAAGATTAAAAACATATG
GGGATTATGTGGCGACCCTCACCCTAACCCTAACCTCAATAGGGGCAATA
ATCACTCTCCGTCTATGGAGTATAGTTACCCTCTGTTTCAGATAAAAATA
AAACAAAATTGAAAGTGCAGATGGACATGGAAAGGTTCTCATAACAGCCT
GTGGCTCCTGTGGTTGGACCTTGCCTTGCGCATACGACCAACCTGATTCC
GGGTGGATGCATGCACACTGATCCACTAACCACAGATAGCTAGAGCAAAT
AGCATTTTCTCTTCCTTGATGAACACGTGCTCGCTCTTGTCTTCCCTGTT
TGACCATGGACCATGCATCCCCGAGAAGACTGAGGTGATTGATGCATTGG
GACAGGAGTGAAGTGATCGACCGGAGTGTCGGAGTGTTGTTCTTCACTTT
CACGGTGATGGTGATAGAACAGAGTGGAGCGATTAGAATTACGAGTGGCG
TCGATGATGCAGAAACAATCCTCTCGCCTCACGCAAACGCAAAAAAATCG
CACCACACTACACTACATTAATCGACAATTGTTTTATTTGAAACGCGCCG
CCCTCATCCACCAGGAAAAAGACACGCGACCCCGCCCCCCTGCCCCCATG
TTCTTCATTCCATTTATACACCACCCAACACGCCCATCTTGACCGGGTAT
TAGGTGAAGATGATGCCGCAGAGGCACACCCCACCATGGCAGCAGCAGAA
GAAACCGCGCGCGTGAAAGCCGAAACCGCCCTAAGAAAACTCCCGCCGGC
GGAGCTAGCCGGGATACAGGCTAGGCTAGGCCTCTCCGACGACCTCGAGG
GACAGGATGAAATCATCCATCACGCGGTTCCAGTCTTGGCCGCCAAGATC
TTAGCCAGGCAAGCGGCGGCGGCGATGGCGACAATGGCGGAGGCTCAACC
CAATATTAGACAACAAGAAGTTCTTAGCCTCGAATCTACCGCAGTGGACA
ACAAGCCACGCATGTCACCGGCCGCGGCGACACCGAACCCGCGAAGCCCG
ACCAACGGGTATAATGATAATTATACTCCCGATAGTGGCATGTCGGGCGG
CTACTCGCGCGATGACGAAGTTGCAGAGGGCGCTGGTCTTCCTGAGACGC
GCATGGCGCGGCCGAGGAAAGAAGGCTCCGAGCGGGAGTGGGTGAGCGTA
GGTGGTGATGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7353:1429..4393-

>mRNA_H-paniculata_contig7353.15325.1 ID=mRNA_H-paniculata_contig7353.15325.1|Name=mRNA_H-paniculata_contig7353.15325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig7353:1429..4393- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACACCGCCCTGATTCATACAAAATGTATTTTTATCTATCCCCAAG
TTGTATTAATTTCGCAGAACGTCAGAGGCAGATGGGCTGGTGTACCCTCC
TAGTGTCGGCGATTGTGCCGACAGTGGTGGGAAGCTTCGGAGTTCTTCCG
GCACCGTGCGCGGTCACAACCGCCTTCGGAGGGCAATGTCGCCACAGCGC
GTCGCTAACCATCTCTGATTTTCGGCATCGAAGGAACCTTGCAGAGACAG
TAGCAATGGGATGGACCTCAGCGGCGCGACCGAATCGACATCGACCACGA
ATACAGGAATTGCTCTCGCCGCTGCCAGCTGCAGTTAGCAATAATGGTGA
TGCTACACCGCCCTGATTCATACAAAATGTATTTTTATCTATCCCCAAGT
TGTATTAATTTCGCAGAACGTCAGAGGCAGATGGGCTGGTGTACCCTCCT
AGTGTCGGCGATTGTGCCGACAGTGGTGGGAAGCTTCGGAGTTCTTCCGG
CACCGTGCGCGGTCACAACCGCCTTCGGAGGGCAATGTCGCCACAGCGCG
TCGCTAACCATCTCTGATTTTCGGCATCGAAGGAACCTTGCAGAGACAGT
AGCAATGGGATGGACCTCAGCGGCGCGACCGAATCGACATCGACCACGAA
TACAGGAATTGCTCTCGCCGCTGCCAGCTGCAGTTAGCAATAATGGTGGT
GAAGATGATGCCGCAGAGGCACACCCCACCATGGCAGCAGCAGAAGAAAC
CGCGCGCGTGAAAGCCGAAACCGCCCTAAGAAAACTCCCGCCGGCGGAGC
TAGCCGGGATACAGGCTAGGCTAGGCCTCTCCGACGACCTCGAGGGACAG
GATGAAATCATCCATCACGCGGTTCCAGTCTTGGCCGCCAAGATCTTAGC
CAGGCAAGCGGCGGCGGCGATGGCGACAATGGCGGAGGCTCAACCCAATA
TTAGACAACAAGAAGTTCTTAGCCTCGAATCTACCGCAGTGGACAACAAG
CCACGCATGTCACCGGCCGCGGCGACACCGAACCCGCGAAGCCCGACCAA
CGGGTATAATGATAATTATACTCCCGATAGTGGCATGTCGGGCGGCTACT
CGCGCGATGACGAAGTTGCAGAGGGCGCTGGTCTTCCTGAGACGCGCATG
GCGCGGCCGAGGAAAGAAGGCTCCGAGCGGGAGTGGGTGAGCGTAGGTGG
TGATGGGGAGGTGAAGATGATGCCGCAGAGGCACACCCCACCATGGCAGC
AGCAGAAGAAACCGCGCGCGTGAAAGCCGAAACCGCCCTAAGAAAACTCC
CGCCGGCGGAGCTAGCCGGGATACAGGCTAGGCTAGGCCTCTCCGACGAC
CTCGAGGGACAGGATGAAATCATCCATCACGCGGTTCCAGTCTTGGCCGC
CAAGATCTTAGCCAGGCAAGCGGCGGCGGCGATGGCGACAATGGCGGAGG
CTCAACCCAATATTAGACAACAAGAAGTTCTTAGCCTCGAATCTACCGCA
GTGGACAACAAGCCACGCATGTCACCGGCCGCGGCGACACCGAACCCGCG
AAGCCCGACCAACGGGTATAATGATAATTATACTCCCGATAGTGGCATGT
CGGGCGGCTACTCGCGCGATGACGAAGTTGCAGAGGGCGCTGGTCTTCCT
GAGACGCGCATGGCGCGGCCGAGGAAAGAAGGCTCCGAGCGGGAGTGGGT
GAGCGTAGGTGGTGATGGGGAG
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