mRNA_H-paniculata_contig7345.15315.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7345.15315.1
Unique NamemRNA_H-paniculata_contig7345.15315.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7345.15315.1 vs. uniprot
Match: A0A6H5K112_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K112_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.600e-32
Identity = 69/119 (57.98%), Postives = 86/119 (72.27%), Query Frame = 1 
Query:    4 ETPRIAPLFSHYSLELTVDAILGVPSTSEPQTPLEYTRDTVEKLELAHELARRNLRGRSDKQQEENRQLFVPSFVVGDRISLHRPPSESDGPNPKFISLLHGPYTVQAQMSPITYCVSK 360
            ETP    L    + +L VD ILGVPST  PQ+ L+Y+R TVE L+LA+ELARRNL+ RS KQ + N +L  PSF  GD++ +HRP +ES GPNPK IS  HGPYTV+AQ+SP+ Y VSK
Sbjct:  937 ETPHY--LMFGRAAKLPVDLILGVPSTPAPQSRLDYSRRTVENLQLAYELARRNLKERSSKQADANEKLSFPSFKFGDQVLVHRPYTESAGPNPKLISPWHGPYTVRAQLSPVIYRVSK 1053
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BLAST of mRNA_H-paniculata_contig7345.15315.1 vs. uniprot
Match: A0A6H5JGF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.470e-30
Identity = 60/104 (57.69%), Postives = 82/104 (78.85%), Query Frame = 1 
Query:   49 LTVDAILGVPSTSEPQTPLEYTRDTVEKLELAHELARRNLRGRSDKQQEENRQLFVPSFVVGDRISLHRPPSESDGPNPKFISLLHGPYTVQAQMSPITYCVSK 360
            L V+  LGVP+T  PQ+ L+++R TVE L+LA+ELARRNL+ R+DKQ  EN +L  PSF +GD++ LHRP +E+DGPNPK +S  HGP+TV++Q+SP+ Y VSK
Sbjct:  759 LPVELFLGVPATDAPQSRLDHSRRTVENLQLAYELARRNLKERTDKQAVENEKLSFPSFKMGDQVLLHRPYNETDGPNPKLVSPWHGPFTVRSQISPVIYRVSK 862
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7345.15315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K112_9PHAE3.600e-3257.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGF6_9PHAE1.470e-3057.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7345contigH-paniculata_contig7345:11077..11442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930897.6427445-CDS-H-paniculata_contig7345:11076..114421622930897.6427445-CDS-H-paniculata_contig7345:11076..11442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7345 11077..11442 -
1691481501.3165178-CDS-H-paniculata_contig7345:11076..114421691481501.3165178-CDS-H-paniculata_contig7345:11076..11442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7345 11077..11442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7345.15315.1prot_H-paniculata_contig7345.15315.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7345 11077..11442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7345.15315.1

>prot_H-paniculata_contig7345.15315.1 ID=prot_H-paniculata_contig7345.15315.1|Name=mRNA_H-paniculata_contig7345.15315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
YETPRIAPLFSHYSLELTVDAILGVPSTSEPQTPLEYTRDTVEKLELAHE
LARRNLRGRSDKQQEENRQLFVPSFVVGDRISLHRPPSESDGPNPKFISL
LHGPYTVQAQMSPITYCVSKNG
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mRNA from alignment at H-paniculata_contig7345:11077..11442-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7345.15315.1 ID=mRNA_H-paniculata_contig7345.15315.1|Name=mRNA_H-paniculata_contig7345.15315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig7345:11077..11442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGAAACGCCACGAATTGCGCCGCTATTCTCTCATTACTCTTTAGAACT
AACGGTTGATGCCATTCTTGGCGTTCCGTCCACTTCCGAACCCCAAACCC
CGCTTGAATACACGCGGGATACCGTCGAGAAGTTGGAGCTAGCTCATGAG
CTAGCGCGCCGTAATCTCAGAGGGCGGTCGGATAAGCAGCAGGAAGAAAA
CCGTCAACTTTTTGTCCCTAGCTTCGTCGTTGGCGATCGTATCTCGTTAC
ACCGCCCACCCTCTGAGTCCGACGGTCCGAACCCCAAGTTTATCAGTCTT
TTGCACGGTCCGTACACCGTCCAAGCACAAATGTCTCCAATTACGTATTG
TGTTTCCAAAAATGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig7345:11077..11442-

>mRNA_H-paniculata_contig7345.15315.1 ID=mRNA_H-paniculata_contig7345.15315.1|Name=mRNA_H-paniculata_contig7345.15315.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig7345:11077..11442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGAAACGCCACGAATTGCGCCGCTATTCTCTCATTACTCTTTAGAACT
AACGGTTGATGCCATTCTTGGCGTTCCGTCCACTTCCGAACCCCAAACCC
CGCTTGAATACACGCGGGATACCGTCGAGAAGTTGGAGCTAGCTCATGAG
CTAGCGCGCCGTAATCTCAGAGGGCGGTCGGATAAGCAGCAGGAAGAAAA
CCGTCAACTTTTTGTCCCTAGCTTCGTCGTTGGCGATCGTATCTCGTTAC
ACCGCCCACCCTCTGAGTCCGACGGTCCGAACCCCAAGTTTATCAGTCTT
TTGCACGGTCCGTACACCGTCCAAGCACAAATGTCTCCAATTACGTATTG
TGTTTCCAAAAATGGCTACGAAACGCCACGAATTGCGCCGCTATTCTCTC
ATTACTCTTTAGAACTAACGGTTGATGCCATTCTTGGCGTTCCGTCCACT
TCCGAACCCCAAACCCCGCTTGAATACACGCGGGATACCGTCGAGAAGTT
GGAGCTAGCTCATGAGCTAGCGCGCCGTAATCTCAGAGGGCGGTCGGATA
AGCAGCAGGAAGAAAACCGTCAACTTTTTGTCCCTAGCTTCGTCGTTGGC
GATCGTATCTCGTTACACCGCCCACCCTCTGAGTCCGACGGTCCGAACCC
CAAGTTTATCAGTCTTTTGCACGGTCCGTACACCGTCCAAGCACAAATGT
CTCCAATTACGTATTGTGTTTCCAAAAATGGC
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