mRNA_H-paniculata_contig12441.1531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12441.1531.1
Unique NamemRNA_H-paniculata_contig12441.1531.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12441.1531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12441contigH-paniculata_contig12441:4359..4826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size469
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.761453-CDS-H-paniculata_contig12441:4358..48141622928963.761453-CDS-H-paniculata_contig12441:4358..4814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12441 4359..4814 -
1691480684.0715024-CDS-H-paniculata_contig12441:4358..48141691480684.0715024-CDS-H-paniculata_contig12441:4358..4814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12441 4359..4814 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.7827775-UTR-H-paniculata_contig12441:4814..48261622928963.7827775-UTR-H-paniculata_contig12441:4814..4826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12441 4815..4826 -
1691480684.0823529-UTR-H-paniculata_contig12441:4814..48261691480684.0823529-UTR-H-paniculata_contig12441:4814..4826Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12441 4815..4826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12441.1531.1prot_H-paniculata_contig12441.1531.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12441 4359..4814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12441.1531.1

>prot_H-paniculata_contig12441.1531.1 ID=prot_H-paniculata_contig12441.1531.1|Name=mRNA_H-paniculata_contig12441.1531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MSAPAPLAGWDASAHYSAFVLFAAPSAEHRLSDPVQCAPAYRIKPLHSLH
GKANALVCPLVLPSRISSPSCAPEMCGPSWCVAVRAAEGASTSSSESDAS
VSSFSLLTDSEDGASLLIDSLPAVDDDPSNDAVESFEVHQLIRSGNSSPL
CS
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mRNA from alignment at H-paniculata_contig12441:4359..4826-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12441.1531.1 ID=mRNA_H-paniculata_contig12441.1531.1|Name=mRNA_H-paniculata_contig12441.1531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig12441:4359..4826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAAGCGTACGATGTCGGCTCCGGCTCCACTTGCTGGATGGGACGCTTC
GGCACATTACTCGGCTTTCGTGTTGTTTGCTGCTCCATCAGCAGAGCATC
GATTGTCTGACCCCGTTCAATGTGCCCCAGCATACCGAATAAAGCCTCTC
CATTCGCTTCATGGTAAAGCAAATGCCCTGGTCTGCCCTCTGGTCCTGCC
GTCCCGAATCTCTTCACCGTCATGCGCTCCAGAGATGTGCGGCCCGAGCT
GGTGCGTCGCAGTCCGGGCCGCTGAAGGTGCTTCAACATCTTCATCCGAG
AGTGACGCTTCGGTTTCGTCGTTTTCACTACTTACTGACTCGGAAGATGG
AGCATCGTTGCTAATCGACTCGCTGCCGGCCGTCGATGATGACCCATCGA
ACGATGCGGTGGAGTCGTTTGAAGTTCACCAGTTGATTCGGTCCGGCAAC
TCATCACCGCTCTGCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig12441:4359..4826-

>mRNA_H-paniculata_contig12441.1531.1 ID=mRNA_H-paniculata_contig12441.1531.1|Name=mRNA_H-paniculata_contig12441.1531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig12441:4359..4826- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCTCCGGCTCCACTTGCTGGATGGGACGCTTCGGCACATTACTC
GGCTTTCGTGTTGTTTGCTGCTCCATCAGCAGAGCATCGATTGTCTGACC
CCGTTCAATGTGCCCCAGCATACCGAATAAAGCCTCTCCATTCGCTTCAT
GGTAAAGCAAATGCCCTGGTCTGCCCTCTGGTCCTGCCGTCCCGAATCTC
TTCACCGTCATGCGCTCCAGAGATGTGCGGCCCGAGCTGGTGCGTCGCAG
TCCGGGCCGCTGAAGGTGCTTCAACATCTTCATCCGAGAGTGACGCTTCG
GTTTCGTCGTTTTCACTACTTACTGACTCGGAAGATGGAGCATCGTTGCT
AATCGACTCGCTGCCGGCCGTCGATGATGACCCATCGAACGATGCGGTGG
AGTCGTTTGAAGTTCACCAGTTGATTCGGTCCGGCAACTCATCACCGCTC
TGCTCCATGTCGGCTCCGGCTCCACTTGCTGGATGGGACGCTTCGGCACA
TTACTCGGCTTTCGTGTTGTTTGCTGCTCCATCAGCAGAGCATCGATTGT
CTGACCCCGTTCAATGTGCCCCAGCATACCGAATAAAGCCTCTCCATTCG
CTTCATGGTAAAGCAAATGCCCTGGTCTGCCCTCTGGTCCTGCCGTCCCG
AATCTCTTCACCGTCATGCGCTCCAGAGATGTGCGGCCCGAGCTGGTGCG
TCGCAGTCCGGGCCGCTGAAGGTGCTTCAACATCTTCATCCGAGAGTGAC
GCTTCGGTTTCGTCGTTTTCACTACTTACTGACTCGGAAGATGGAGCATC
GTTGCTAATCGACTCGCTGCCGGCCGTCGATGATGACCCATCGAACGATG
CGGTGGAGTCGTTTGAAGTTCACCAGTTGATTCGGTCCGGCAACTCATCA
CCGCTCTGCTCC
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