mRNA_H-paniculata_contig12436.1528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12436.1528.1
Unique NamemRNA_H-paniculata_contig12436.1528.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12436.1528.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.820e-29
Identity = 50/67 (74.63%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:   13 RLAEDTFKQAVEADPLHSESWNGLGS-VSRDPLVQQHCWVRSVQLAHNPSAWANLGMLYIRWGLDIQ 210
            R AE+ F+++VEADP +SE+WNGLG+ +S+ PLVQQHCWVRSVQL HNPSAWANLGMLY+RWG+DIQ
Sbjct:  446 RSAEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYVRWGMDIQ 512
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BLAST of mRNA_H-paniculata_contig12436.1528.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 9.810e-29
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   13 RLAEDTFKQAVEADPLHSESWNGLGS-VSRDPLVQQHCWVRSVQLAHNPSAWANLGMLYIRWGLDIQ 210
            R AE+ F+++VEADP +SE+WNGLG+ +S  PLVQQHCWVRSVQL HNPSAWANLGMLY+RWG+DIQ
Sbjct:  967 RSAEEAFRRSVEADPAYSEAWNGLGATMSGRPLVQQHCWVRSVQLEHNPSAWANLGMLYVRWGMDIQ 1033
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BLAST of mRNA_H-paniculata_contig12436.1528.1 vs. uniprot
Match: A0A3M7NBL5_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 135597 TaxID=2249420 RepID=A0A3M7NBL5_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 1.150e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   31 FKQAVEADPLHSESWNGLGSVSR--DPLVQQHCWVRSVQL-AHNPSAWANLGMLYI 189
            FK+A+E +  +SE WN LG V+   +P V QH +VRS+ L  H+   W NLG+LY+
Sbjct:  922 FKRAIELEAGNSEFWNALGLVTMTLNPKVSQHSFVRSLHLNEHSARTWTNLGVLYL 977
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BLAST of mRNA_H-paniculata_contig12436.1528.1 vs. uniprot
Match: A0A3M0W0G4_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 134920 TaxID=2249417 RepID=A0A3M0W0G4_9EURO)

HSP 1 Score: 52.4 bits (124), Expect = 4.020e-6
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   31 FKQAVEADPLHSESWNGLGSVSR--DPLVQQHCWVRSVQLA-HNPSAWANLGMLYI 189
            FK+A+E +  ++E WN LG V+   +P V QH +VRS+ L  H+   W NLG+LY+
Sbjct:  923 FKRAIELEAGNAEFWNALGLVTMTLNPKVSQHSFVRSLHLNDHSSRTWTNLGVLYL 978
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BLAST of mRNA_H-paniculata_contig12436.1528.1 vs. uniprot
Match: A0A293MWB5_ORNER (Tetratricopeptide repeat protein 37 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MWB5_ORNER)

HSP 1 Score: 51.6 bits (122), Expect = 7.500e-6
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   28 TFKQAVEADPLHSESWNGLGSVS-----RDPLVQQHCWVRSVQLAH-NPSAWANLGMLYI 189
            + ++AV  +P    +WN LG V+     ++  + QHC ++SVQL   NP+AWANLG LY+
Sbjct:  487 SVQKAVSLNPADPAAWNMLGVVALAKDIKNGALAQHCLIKSVQLESCNPTAWANLGALYL 546
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12436.1528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE2.820e-2974.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI9.810e-2974.63Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A3M7NBL5_9EURO1.150e-646.43Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]
A0A3M0W0G4_9EURO4.020e-644.64Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]
A0A293MWB5_ORNER7.500e-641.67Tetratricopeptide repeat protein 37 (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12436contigH-paniculata_contig12436:249..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.5197499-CDS-H-paniculata_contig12436:248..4641622928963.5197499-CDS-H-paniculata_contig12436:248..464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12436 249..464 -
1691480683.9367604-CDS-H-paniculata_contig12436:248..4641691480683.9367604-CDS-H-paniculata_contig12436:248..464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12436 249..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12436.1528.1prot_H-paniculata_contig12436.1528.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12436 249..464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12436.1528.1

>prot_H-paniculata_contig12436.1528.1 ID=prot_H-paniculata_contig12436.1528.1|Name=mRNA_H-paniculata_contig12436.1528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MQTGRLAEDTFKQAVEADPLHSESWNGLGSVSRDPLVQQHCWVRSVQLAH
NPSAWANLGMLYIRWGLDIQV*
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mRNA from alignment at H-paniculata_contig12436:249..464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12436.1528.1 ID=mRNA_H-paniculata_contig12436.1528.1|Name=mRNA_H-paniculata_contig12436.1528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig12436:249..464- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAACGGGAAGACTGGCTGAAGACACCTTCAAACAGGCTGTCGAGGC
CGACCCTCTACACTCGGAATCGTGGAACGGTCTAGGAAGCGTTTCGCGCG
ACCCTCTGGTGCAGCAGCACTGCTGGGTGCGGTCCGTGCAGCTGGCTCAC
AACCCGAGCGCCTGGGCCAACCTTGGCATGCTCTACATACGGTGGGGTCT
CGACATACAGGTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12436:249..464-

>mRNA_H-paniculata_contig12436.1528.1 ID=mRNA_H-paniculata_contig12436.1528.1|Name=mRNA_H-paniculata_contig12436.1528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig12436:249..464- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAACGGGAAGACTGGCTGAAGACACCTTCAAACAGGCTGTCGAGGC
CGACCCTCTACACTCGGAATCGTGGAACGGTCTAGGAAGCGTTTCGCGCG
ACCCTCTGGTGCAGCAGCACTGCTGGGTGCGGTCCGTGCAGCTGGCTCAC
AACCCGAGCGCCTGGGCCAACCTTGGCATGCTCTACATACGGTGGGGTCT
CGACATACAGGTGTGAATGCAAACGGGAAGACTGGCTGAAGACACCTTCA
AACAGGCTGTCGAGGCCGACCCTCTACACTCGGAATCGTGGAACGGTCTA
GGAAGCGTTTCGCGCGACCCTCTGGTGCAGCAGCACTGCTGGGTGCGGTC
CGTGCAGCTGGCTCACAACCCGAGCGCCTGGGCCAACCTTGGCATGCTCT
ACATACGGTGGGGTCTCGACATACAGGTGTGA
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