mRNA_H-paniculata_contig1243.1524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1243.1524.1 vs. uniprot
Match: D7FW85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW85_ECTSI) HSP 1 Score: 368 bits (944), Expect = 6.220e-107 Identity = 288/730 (39.45%), Postives = 356/730 (48.77%), Query Frame = 3
Query: 645 GAPNPLDKMGTVVRTSLAGSLRLVGAAVRGVGEAVFQAGTVAEGLAGGTGMVAEDLVRVVQGALYMARDDMENFSNAAARKGQGDGYGSKTIDRRKN---EGDRTQTPAAVGVLKSLSPEKNMEKVVDD---QEAGVVKTAASLASAAVDAVRRFWQVVCSLTCLMAGAALREAAQLFRQREGGAPPVAPRLAFILVLALGSCVRRRRLRRSSQPSPPQVVETSPARETFDFSSPRRRLSV-------PPGLGLGFGLAPTLSPSGNDHSRNNXXXXXXXXXXXXXXXXXXLTSPSRSLSLGSPRPTHGTMPPRAVVSP-SRLPLQVVGSIAPLTDDIVGVDPSLPSPAQQARGNPLLLPRTSIAGPREEESGAVGLVEGGDVATADGEAATAAAAVGVGRRVTARWRPWRWWRMEGRVAPPLRRQNGDTRSYIRWLWLLLLWFAASVLEERERDRVAWLAWDDGFRKGQMSRVFNSSAELETAIWLNHLIGGLWGRGGTIELV--------GRRSGGRVDG----------GLSSYVSEWFAEGVLEALEEFKPTSVVAVELQDINLGTVAPQILGIQMLDPSSSASPGGGDGSYQGQHAENFVSFRVALELATRGLSVGVGVKLSSLKKALLPTGNIRLLEAYFRGSISVRLEVRDEFPFVGKALVAFDGAPEVRVRMEQWGLDALTLGSV----DEWVRIGLRQAMKPYVLPGLLEINAAEHLCPDC 2726
G P+P D++G+V TSLAGSL+L+ AAV GVG+AVFQAG +AEGLAGGTG VAED VRVVQ + ARDDM +N R+GQG + D RKN G + P A + +PE D + +V S+ A W+ V L L A +R+AA LFR + G PP APR+A +++L + R RE S RR L PP + F LA +L SPSRSL R GT P RA SP +R +VV P D GVDPSLPSPAQ ERERDR AWLAWD+G+R+GQ SR + +AE ET WLNH++ WG GT +V G G V G GLSS+V+E EG LE LEE KPTSVV VEL D+ LG+ APQILGI MLDP+SSASPG GDG H +SFRV LE+A L VGV VK+SSL+KALLPTG +RLLE +FRGS+SVR E+R EFPFV AL+AFD P+V++++EQWGLDAL+LG+V DEW R+ L+QA+ PYV+PG +E++AA +CPDC
Sbjct: 97 GDPDPFDRIGSVALTSLAGSLKLLSAAVGGVGDAVFQAGVLAEGLAGGTGQVAEDTVRVVQRFVGWARDDMVKLNN---RRGQGGHH-----DVRKNVDAPGPGKRPPPATPPVGVRTPEPAPHAAEKDGFTPDPALVSDGLSVLEA--------WEGVRDLGRLAVEALVRQAAGLFRLKNGALPP-APRIAALILLTVFIYDRXXXXXXXXXXXXXXXXXXXSPREPQRSSVARRDLRERGDGNRGPPSTAVAFDLAASLH------------------------------SPSRSL-FSRLRQAAGTPPLRAPGSPWTRRTYEVV----PQPD---GVDPSLPSPAQ----------------------------------------------------------------------------------------------------ERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWG--GTKRVVPTGFAGVNGIAGGRDVHGCVVTGMLAADGLSSFVAEHLTEGFLEVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCN--HEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTALIAFDDPPDVQIKLEQWGLDALSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDC 667
BLAST of mRNA_H-paniculata_contig1243.1524.1 vs. uniprot
Match: A0A6H5L2G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G9_9PHAE) HSP 1 Score: 342 bits (876), Expect = 3.070e-98 Identity = 252/579 (43.52%), Postives = 313/579 (54.06%), Query Frame = 3
Query: 1092 WQVVCSLTCLMAGAALREAAQLFRQREGGAPPVAPRLAFILVLALGSCVRRRRLRRSSQPSPPQVVETSPARETFDFSSPRRRLSV-------PPGLGLGFGLAPTLSPSGNDHSRNNXXXXXXXXXXXXXXXXXXLTSPSRSLSLGSPRPTHGTMPPRAVVSP-SRLPLQVVGSIAPLTDDIVGVDPSLPSPAQQARGNPLLLPRTSIAGPREEESGAVGLVEGGDVATADGEAATAAAAVGVG-RRVTARWRPWRWWR-MEG--RVAPPLRRQNGDTRSYIRWLWLLLLWFAASVLEERERDRVAWLAWDDGFRKGQMSRVFNSSAELETAIWLNHLIGGLWGRGGTIELVGRR-------SGGR------VDG-----GLSSYVSEWFAEGVLEALEEFKPTSVVAVELQDINLGTVAPQILGIQMLDPSSSASPGGGDGSYQGQHAENFVSFRVALELATRGLSVGVGVKLSSLKKALLPTGNIRLLEAYFRGSISVRLEVRDEFPFVGKALVAFDGAPEVRVRMEQWGLDALTLGSV----DEWVRIGLRQAMKPYVLPGLLEINAAEHLCPDC 2726
W+ V L L A +R+AA LFR++ G PP APR+A +++LA+ R RE S RR L PP + F L +L SPSRSL R GT P RA SP +R +VV P D G+DPSLP+P+Q L RT A R G GG+ + AA+ G G R T W WWR + G R P RR G + LWL LW ASVLEERERDR AWLAWD+G+R+GQ SR + +AE ET WLNH++ WG GT +V R +GGR V G G+SS+V+E EG +E LEE KPTSVV VEL D+ LG+ APQILGI MLDP+SSASPG GDG H +SFRV LE+A L VGV VK+SSL+KALLPTG +RLLE +FRGS+SVR E+R EFPFV L+AFD P+V+V++EQWGLDAL+LG+V DEW R+ L+QA+ PYV+PG +E++AA +CPDC
Sbjct: 70 WEGVRDLGRLAVEALVRQAASLFRRKNGALPP-APRIAALILLAIFIYDRX-----XXXXXXXXXXXXXXXREPQRSSVARRDLGERGDGNRGPPSTAVAFDLTASLH------------------------------SPSRSL-FSRLRQAAGTPPLRAPGSPWTRRTYEVV----PQPD---GIDPSLPTPSQARAA----LARTGQAR-RSLMPGLTRRRGGGEGEVERERSVPMAASSGRGVERGTTSSVGWGWWRRVRGWTRCREP-RRAGGGSGGRRYMLWLFALWLVASVLEERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWG--GTKRVVPRGFAGVNGIAGGRDVHGCVVTGMLAADGMSSFVAEHLTEGFVEVLEEMKPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCS--HEGECLSFRVDLEVAAPDLRVGVRVKVSSLEKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTVLIAFDDPPDVQVKLEQWGLDALSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDC 594
BLAST of mRNA_H-paniculata_contig1243.1524.1 vs. uniprot
Match: A0A6H5L3C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C8_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 2.680e-13 Identity = 79/227 (34.80%), Postives = 102/227 (44.93%), Query Frame = 3
Query: 141 PAAATVADGGLKEEVQKAKRHQPW--EEADDDAVFAAAVLGELHDTIRVVGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVDSKPKTSASVHNRDQSSEAATTT-SHEHGGSSYDGRMLTVAPSGLASKTRRAREATEQSSPPPDPTEDKTTKGGDKGEIRKGAPNPLDKMGTVVRTSLAGSLRLVGAAVRGVGEAVFQAGTVAEGLAGGTGMVAEDL 812
PA K+E + KR + EE D+D VFAA VLG +HD +R GD+ +V K S N S+ +A T SH+ GG S G A+ T +SS +GGD P+P D++G+V TSLAGSL+L+ AAV GVG+AVFQAG +AEGLAGGTG VA +L
Sbjct: 6 PAHGRARQEETKQEKSRRKRRRGAGKEELDEDVVFAAEVLGLVHDRVRDAGDLMRVIGDTAGGLFGGTFKLLSAPVNGLSSMLDAASREV----KADVSPANAQPSTLSADPTRSHDAGGGSAAGSSSASPDDSGEDTVPVAKGHTGRSS----------GQGGD--------PDPFDRIGSVALTSLAGSLKLLSAAVGGVGDAVFQAGVLAEGLAGGTGQVAGEL 210 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1243.1524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1243.1524.1 >prot_H-paniculata_contig1243.1524.1 ID=prot_H-paniculata_contig1243.1524.1|Name=mRNA_H-paniculata_contig1243.1524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1156bp MKPWTTSTIDCRLDVYMKYYVRERLVVVGVLVLAVFAPAAATVADGGLKEback to top mRNA from alignment at H-paniculata_contig1243:9371..17339- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1243.1524.1 ID=mRNA_H-paniculata_contig1243.1524.1|Name=mRNA_H-paniculata_contig1243.1524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7969bp|location=Sequence derived from alignment at H-paniculata_contig1243:9371..17339- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1243:9371..17339- >mRNA_H-paniculata_contig1243.1524.1 ID=mRNA_H-paniculata_contig1243.1524.1|Name=mRNA_H-paniculata_contig1243.1524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6936bp|location=Sequence derived from alignment at H-paniculata_contig1243:9371..17339- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |