mRNA_H-paniculata_contig1243.1523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1243.1523.1
Unique NamemRNA_H-paniculata_contig1243.1523.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A6H5L2L5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2L5_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 1.260e-113
Identity = 199/330 (60.30%), Postives = 223/330 (67.58%), Query Frame = 3 
Query:   69 MRYSGEVLAARGVLAGFMVVQTAGFVCPHTSLAISTPSRICVSSSTFFTSVSTVSHRGRIFAPPSTLPSAATPPRNRSGRPGRRPGGALRARRPLSRRDDYDDGLDADFDDDYFYDEDELMGGRGVPPIGGRRQRKSKVSLLPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKAGPQQPANGPRVMANTVKTERVD 1058
            MRYSG  LAA G+    ++VQTAGF+CP T    S+ +   V S +                      ++A+P R ++GR  +R G                                                ++ KV LLP+ +SKAL+AGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLR +NVVEVLQRKR LLT EDVE CKGGMNTWG+VGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKK+   +PANGPRVM+ TV+T   D
Sbjct:    1 MRYSGATLAAGGMFLA-LIVQTAGFLCPTTINPHSSAAHRAVGSGS----------------------TSASPVRRQNGRV-KREGRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPKVPLLPTTLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVEKCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTD 306
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A836CMQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ9_9STRA)

HSP 1 Score: 274 bits (700), Expect = 3.070e-83
Identity = 143/209 (68.42%), Postives = 166/209 (79.43%), Query Frame = 3 
Query:  453 IGGRRQRKSKVSLLPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA------------AAKKAGPQQPANGPRVMANTVK 1043
            +G RR+ K   + +  +I KAL+AG+FVLGIGTGVTVDSAINT+P+DLASRDAIDRNAPNP ICQTYGSSAMVVD+RVFVTFNPFS++V+QAD KPGCVLR +N V+VL+R RNL+   +VETCKGGMNTW FVGDLN  PQLSCVYQSDDAQNEF+S+PK GLGEDVYDDDRAA            +A K GPQ  A G +V  +  K
Sbjct:   98 VGERRRDKGFFNSV--KIPKALLAGIFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPGICQTYGSSAMVVDERVFVTFNPFSIYVAQADVKPGCVLRQSNFVQVLKR-RNLINDAEVETCKGGMNTWAFVGDLNGKPQLSCVYQSDDAQNEFVSDPKIGLGEDVYDDDRAAEQAARAARAVAASATKPGPQ--AQGMQVEGSQKK 301
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A7S2UF23_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF23_9STRA)

HSP 1 Score: 257 bits (656), Expect = 1.140e-76
Identity = 125/185 (67.57%), Postives = 149/185 (80.54%), Query Frame = 3 
Query:  435 GRGVPPIGGRRQRKSKVSLLPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKK 989
            G  VP   GRR        LP  +SK+L+AG+FVLGIGTGVTVDSAINT+ RDLASRDAIDRNAPNP +C TYG+SAM  DQRVFV+FNPF+++V+QAD KP CVLRPAN+V +L R+RN++   +V +CK  MNTW +VGDL+D PQLSCVYQS+DAQNEFLSNPK G+GEDV+DDDRA A  K
Sbjct:  102 GLDVPSPFGRRSGLR----LPDSVSKSLLAGIFVLGIGTGVTVDSAINTNERDLASRDAIDRNAPNPELCSTYGASAMAFDQRVFVSFNPFAVYVAQADVKPACVLRPANIVPIL-RERNMINDAEVRSCKKNMNTWAYVGDLDDMPQLSCVYQSEDAQNEFLSNPKLGIGEDVWDDDRAKATGK 281
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A7R9WGK2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGK2_9STRA)

HSP 1 Score: 249 bits (637), Expect = 2.930e-75
Identity = 117/166 (70.48%), Postives = 141/166 (84.94%), Query Frame = 3 
Query:  492 LPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKK 989
            LP  +SKAL+AG+FVLGIGTGVT++S INT P+DLASRDAIDRNAPNP +C  YG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR +NVV+VL R+R L+   +V TCK  +NTW FVGDL++ PQLSCVYQSDDAQNEFLSNPK G+GEDVYDDDRA+  +K
Sbjct:   16 LPESVSKALLAGIFVLGIGTGVTIESQINTSPKDLASRDAIDRNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVL-RERKLINDNEVRTCKQKVNTWAFVGDLDNMPQLSCVYQSDDAQNEFLSNPKLGIGEDVYDDDRASLERK 180
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A7S4WJP8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WJP8_9STRA)

HSP 1 Score: 251 bits (641), Expect = 2.130e-74
Identity = 117/167 (70.06%), Postives = 141/167 (84.43%), Query Frame = 3 
Query:  492 LPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKA 992
            LP+ +SKAL+AGVFVLGIGTGVT+DS INT+P+DLASRDA+DRNAPNP +C TYG+ AM  DQRVFV+FNPF+++V+QAD KP CVLRPANVV +L R++NL+   +V +CK  MNTW FVGDL D PQLSCVY+S+DAQNEFLSNPK G+GEDV+DDDR    K A
Sbjct:  123 LPASVSKALLAGVFVLGIGTGVTIDSQINTNPKDLASRDAVDRNAPNPELCTTYGAPAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPANVVPIL-REKNLINDAEVRSCKQNMNTWAFVGDLQDMPQLSCVYKSEDAQNEFLSNPKLGIGEDVWDDDREKMMKNA 288
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A7S2SJB4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJB4_9STRA)

HSP 1 Score: 248 bits (633), Expect = 4.850e-74
Identity = 123/191 (64.40%), Postives = 148/191 (77.49%), Query Frame = 3 
Query:  438 RGVPPIGGRRQRKSKV------SLLPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKA 992
            R  P +  R+ R+  V       L P Q++  L+AGVFVLGIGTGVTVDSAINT+P+DLASRDAIDR APN  +CQ YG+SAMV+DQR+FVTFNPF+++V+QADTKPGCVLR +NVV VLQ K  LL ++++  CK  MNTWGFVG L+D PQLSCVY+S DAQNEFLSNPK GLGED+YD+    A K A
Sbjct:   59 RSGPSVDERKMREDAVVSGGLARLFPKQLTNYLLAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRAAPNAELCQQYGASAMVMDQRLFVTFNPFNVYVTQADTKPGCVLRSSNVVPVLQGK-GLLDRDEIAACKNNMNTWGFVGTLDDRPQLSCVYKSQDAQNEFLSNPKIGLGEDIYDNGIPGAGKNA 248
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A7S3PTW4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTW4_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.490e-73
Identity = 120/177 (67.80%), Postives = 146/177 (82.49%), Query Frame = 3 
Query:  492 LPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA--AAKKAGPQQPANG 1016
            LP  +S AL+AGVFVLGIGTGVTVDS INT P+DLASRDA+D+ APNP +C TYG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR +NVV VLQ  R L+  ++V +CK  MNTW FVGDLND+PQLSCVY+S+DAQNEFLS+PKYG+GEDV+DDDR A  AA+K   ++  NG
Sbjct:  111 LPESVSTALLAGVFVLGIGTGVTVDSQINTSPKDLASRDAVDQAAPNPRLCSTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRASNVVPVLQ-DRGLINGKEVRSCKQNMNTWAFVGDLNDYPQLSCVYRSEDAQNEFLSDPKYGIGEDVWDDDRVAIEAARKGSVKKVKNG 286
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: K0SH28_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SH28_THAOC)

HSP 1 Score: 243 bits (621), Expect = 9.750e-72
Identity = 119/194 (61.34%), Postives = 146/194 (75.26%), Query Frame = 3 
Query:  441 GVPPIGGRRQRKSKVSL------------LPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAK 986
            G PP+ G     + +S+            +PS +S AL+AGVFVLGIGTGVTVDS INT+P+DLASRDA+D+NAPNP +C TYG+SAM  DQRVFV+FNPF+++V+QAD KP CVLRP+NVV VL ++R LL   +V  CK  MNTW FVGDLND PQLSCVY+S+DAQNEFL +PK G+GED  DDD   A+K
Sbjct:   71 GTPPLTGSSPDDTSLSIPSSFGRGDTGMRMPSSVSAALLAGVFVLGIGTGVTVDSQINTNPKDLASRDAVDKNAPNPTLCTTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPSNVVPVL-KERKLLNDNEVRGCKMNMNTWAFVGDLNDQPQLSCVYKSEDAQNEFLEDPKRGIGEDYLDDDIDRASK 263
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A7S4I7G3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I7G3_9STRA)

HSP 1 Score: 244 bits (622), Expect = 1.220e-71
Identity = 112/166 (67.47%), Postives = 139/166 (83.73%), Query Frame = 3 
Query:  492 LPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKK 989
            LP  +SKAL+AG+FVLGIG GV ++S +NT P+DLASRDAID+NAPNP +C  YG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR +NVV+VL ++RNL+   +V +CK  +NTW FVGDL+  PQ+SCVYQSDDAQNEFLSNPK G+GEDVYDDDRAA  +K
Sbjct:  117 LPDSVSKALLAGIFVLGIGAGVAIESQVNTSPKDLASRDAIDKNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVL-KERNLINDNEVRSCKQKVNTWAFVGDLDSMPQISCVYQSDDAQNEFLSNPKLGIGEDVYDDDRAALERK 281
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BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Match: A0A7R9WZG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZG6_9STRA)

HSP 1 Score: 239 bits (610), Expect = 7.090e-71
Identity = 111/161 (68.94%), Postives = 138/161 (85.71%), Query Frame = 3 
Query:  492 LPSQISKALVAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVETCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRA 974
            LP+ +S+A++AGVFVLGIG GVT+DSAINT+PRDLASRDAID+ APN ++C  YG+SAM  DQRVFV+FNPF+++V+QAD KP CVLRP+NVV +L ++RNL+  ++V +CK  MNTW FVG+L D PQLSCVY+S DAQNEFLSNPKYG+GED  DDDRA
Sbjct:   47 LPASVSQAVLAGVFVLGIGLGVTIDSAINTNPRDLASRDAIDQAAPNSSLCANYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPSNVVPIL-KQRNLINDDEVRSCKANMNTWAFVGNLGDAPQLSCVYKSADAQNEFLSNPKYGIGEDYLDDDRA 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1243.1523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2L5_9PHAE1.260e-11360.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMQ9_9STRA3.070e-8368.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UF23_9STRA1.140e-7667.57Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7R9WGK2_9STRA2.930e-7570.48Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4WJP8_9STRA2.130e-7470.06Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2SJB4_9STRA4.850e-7464.40Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3PTW4_9STRA2.490e-7367.80Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
K0SH28_THAOC9.750e-7261.34Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4I7G3_9STRA1.220e-7167.47Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9WZG6_9STRA7.090e-7168.94Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1243contigH-paniculata_contig1243:2596..7775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score366.3
Seed ortholog evalue1.5e-98
Seed eggNOG ortholog2880.D7FW84
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Protein of unknown function (DUF3172)
EggNOG OGs28NVC@1,2S1FT@2759
Ec32 ortholog descriptionProtein of unknown function DUF3172
Ec32 orthologEc-01_003760.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2031
Cds size996
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.597599-UTR-H-paniculata_contig1243:2595..26631622928962.597599-UTR-H-paniculata_contig1243:2595..2663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1243 2596..2663 +
1691480683.5496814-UTR-H-paniculata_contig1243:2595..26631691480683.5496814-UTR-H-paniculata_contig1243:2595..2663Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1243 2596..2663 +
1622928962.869702-UTR-H-paniculata_contig1243:6808..77751622928962.869702-UTR-H-paniculata_contig1243:6808..7775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1243 6809..7775 +
1691480683.6247478-UTR-H-paniculata_contig1243:6808..77751691480683.6247478-UTR-H-paniculata_contig1243:6808..7775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1243 6809..7775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.6198256-CDS-H-paniculata_contig1243:2663..27261622928962.6198256-CDS-H-paniculata_contig1243:2663..2726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 2664..2726 +
1691480683.5597527-CDS-H-paniculata_contig1243:2663..27261691480683.5597527-CDS-H-paniculata_contig1243:2663..2726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 2664..2726 +
1622928962.634324-CDS-H-paniculata_contig1243:3266..36471622928962.634324-CDS-H-paniculata_contig1243:3266..3647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 3267..3647 +
1691480683.5678742-CDS-H-paniculata_contig1243:3266..36471691480683.5678742-CDS-H-paniculata_contig1243:3266..3647Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 3267..3647 +
1622928962.6481874-CDS-H-paniculata_contig1243:5055..52681622928962.6481874-CDS-H-paniculata_contig1243:5055..5268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 5056..5268 +
1691480683.5790884-CDS-H-paniculata_contig1243:5055..52681691480683.5790884-CDS-H-paniculata_contig1243:5055..5268Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 5056..5268 +
1622928962.661138-CDS-H-paniculata_contig1243:5974..61841622928962.661138-CDS-H-paniculata_contig1243:5974..6184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 5975..6184 +
1691480683.5950038-CDS-H-paniculata_contig1243:5974..61841691480683.5950038-CDS-H-paniculata_contig1243:5974..6184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 5975..6184 +
1622928962.6730983-CDS-H-paniculata_contig1243:6679..68081622928962.6730983-CDS-H-paniculata_contig1243:6679..6808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 6680..6808 +
1691480683.6148705-CDS-H-paniculata_contig1243:6679..68081691480683.6148705-CDS-H-paniculata_contig1243:6679..6808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1243 6680..6808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1243.1523.1prot_H-paniculata_contig1243.1523.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1243 2664..6808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1243.1523.1

>prot_H-paniculata_contig1243.1523.1 ID=prot_H-paniculata_contig1243.1523.1|Name=mRNA_H-paniculata_contig1243.1523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=332bp
MRYSGEVLAARGVLAGFMVVQTAGFVCPHTSLAISTPSRICVSSSTFFTS
VSTVSHRGRIFAPPSTLPSAATPPRNRSGRPGRRPGGALRARRPLSRRDD
YDDGLDADFDDDYFYDEDELMGGRGVPPIGGRRQRKSKVSLLPSQISKAL
VAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAM
VVDQRVFVTFNPFSLHVSQADTKPGCVLRPANVVEVLQRKRNLLTQEDVE
TCKGGMNTWGFVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDD
RAAAAKKAGPQQPANGPRVMANTVKTERVDM*
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mRNA from alignment at H-paniculata_contig1243:2596..7775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1243.1523.1 ID=mRNA_H-paniculata_contig1243.1523.1|Name=mRNA_H-paniculata_contig1243.1523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5180bp|location=Sequence derived from alignment at H-paniculata_contig1243:2596..7775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATGGGTGTCTCTTAGCAGCGTGAGCGCCGCGACACCTTTCAATACCTGT
GAGTGGTGCTAATATATCATGAGGTACTCTGGGGAAGTTCTTGCGGCTCG
CGGGGTACTGGCGGGCTTCATGGTTGTTCAGGCGAGGCAATATACCCCAA
GCATTTGATTCTGTACTATTATTGTACTGACCGGTCTAGCTGTGCTCGTA
ATTAGACTCGGTGTGCTGCCAAGCCAAGCGGCTCATACATTTCACCGTTG
TCGACGGATCTCGCGTTACGTTGACATGCGCAAAATATAGACTACATAGA
GTTGAGTGCAGTAGGCATTATCTTACCCAAGGTCGCCCTTGTTTTCTCCA
TAAATTAGTTCATACTGTCGGTGTTGCAGTTGTATACCTGTGGGCACGAC
CAATTATCGTTGTCTCCTAGAGTGACCGCACGCACCCCGATATCGAAGAG
GTGCTTAAGTGTGCTGTCCAATAGCACCCTCTTATAACTGACACCTGAAT
CGCGTCTCCCACAATACTTTGTGCATTATGTAGTTATTCTACCAGCAAAG
AAGTGTGTGAAGAAGTACATGCAGTACCTTGCATCCTTTCAACAAGCATT
CAACCTCCTCATGCACTCTGCCCCCGCCCTCCGCCATCTTACTGAACCTC
CTACCTCGCGGACACCAACAGACGGCAGGTTTCGTGTGCCCGCACACGTC
TCTTGCTATTTCTACACCGAGCCGAATTTGCGTCTCCTCATCTACCTTTT
TCACATCGGTATCGACAGTTTCACATCGAGGTCGAATTTTTGCTCCTCCA
AGCACGCTGCCCTCAGCGGCAACACCGCCACGAAATCGCAGCGGACGCCC
AGGGAGGCGACCAGGCGGTGCGCTACGGGCTCGCCGACCCTTGTCCCGAC
GAGATGACTACGATGACGGGCTAGACGCCGATTTTGATGATGACTACTTT
TATGACGAGGATGAGCTTATGGGCGGGCGGGGGGTGCCGCCTATCGGTGG
GCGGCGACAGAGGAAGTCGAAGGTGTCGCTATTGCCCTCTCAGATAAGCA
AGGTAAAGAACAGTATATGTTGCTTAACACCTTGGGACCCAGCTTTAGCA
CTATTGGCGACGTGTCGTGGTTCACACGATGTTTGCAACATATTCATCAT
TCACGGAAACATGTTTCGCTCGGTAAGAGGTCCGGTTCCTTAACCCTTTG
ACTCCTTCGGGAGTGTAAGGTGACATCTTGTCACGAAATCGTTCCATGTC
CCGAAATGGGAAGGAGGGGAGAAGATGATACTATGCCAGCCTGTTACAGG
CATATTACAAAATGTATAGCATCAAGAGACACAAAGGAGAAAAGTACTGC
GAAATGGATGGGATCAAGGGACGCCGGGAGCTAAGAGTGAAAGGGGTCAG
AGGTGACCATTTTCACTTCAACCATTGCACGTCCACTGCTTGTTTGCTGC
AACCGCAACGCCGTCTGTGCTTGATATGGGGATAAAATAGCTGATGGGCT
GCAGGACACACATTAGTTCCATCGAGCGGTGGCCGCCAGCTGGACAGCAC
AAACAGTATGATACAGTCAGCAGAGTTGCGCACGGCGTCGAAAGAAACGG
ACAGAACAAGTAGTATGCTGCAGCAGTCAAATATCAGTTGGTGTACTTTT
TCTGCAGCACTATGCGGTCTACGTGCGTGGTGTGCGGCAACGGTAACACT
ATGAAGAGAGGAACAGACGTTGCCAGGCACCAACATCTACCGAGGGTTCC
GTACCGAGTGATAACCGTGCGTGTGTCGCGACCTGTAATGCGTGACGGCA
CCTACAGACATCAGCAGACAGCCTGCCACCACGGTAGTTATGGCAGTCGG
AACATGACAACATGACTTGTGACGTAGGAATTGGTCACTCGGCGTTGGGC
TTCCTGAAAAAGAGATGTTCCTTCTGTCAAGTTCCTTTTTTTTCTAGGAG
TCATAAGGGTGAAGGTGTTAATTCAAGATACCAGTGCATGATAGCACTCC
AGCTTATCAGCAGACATTGGCGATTCCAATTTTCGGTCAGGTAACTTGCA
GACGACGTCCTGGAGTCGTTTGTGATCTTGATCGAACGTTTTTTTGTGCT
CCGTGATCCACAATCAATCGCAGTGTAGAGATATGTCGCCTGTACCGTCT
GTGTCCAACATTCTGTGTTCATTTTTTTTTTCATTTTTTTTTTTTTTAAC
CCTCGGAAGGCTGAGGTAAAAACCTTTTCCGCTGCTTCCACATCCACATT
CTGTGTTCATACCCACGATTATATACGTCGCATCCTACCTCCAGTCCTAT
GGTGGCGTCACCGCAGGACTATCTGAAAGCTGTAGTGCCCTTCTCTCCCC
CCAAAAGGCCTCTGCAGTCACAAATTGCTCCCCTCCCCTTTTTTACCCAA
ACCTATAACCCAACCCCACAAATTACCGAATGCGGCGGTCGCACGTTATT
TTTTGACAAGGCTCTTGTAGCAGGCGTGTTTGTGCTGGGGATCGGCACGG
GGGTGACGGTAGACTCGGCGATCAACACCGACCCGCGTGACCTGGCGAGC
CGTGACGCGATTGACCGCAACGCGCCCAACCCTAACATCTGCCAGACTTA
CGGTTCCAGTGCGATGGTGGTGGACCAACGGGTGTTCGTCACGTTCAACC
CGTTCAGCCTGCACGTATCGCAGGTATACACAACGAAATGTGGTTTTGAG
CTGAGATGAAACACCGTGCTACCGTGTAGTGTGGTTCGCGTTGAGGGAGT
ACAACGGCGCGGAGAGTGCGTGTGTTGTGTGTATTATAGAAGCAAGGCAA
ACAATTGCACGTCGCGGTCGTACATAGTCAGGCGTGTAGCGGATCGCAAA
GAAGATGACTTAATATTGTTCCAGTAAAATCTAGGTCTGTCATTGCTTTC
AGTTTTGGCGCGGGATAGCCTTTCCGTCGAAGGGGAGGGGGGGTTCTCGA
TCCTGCTTAAAGTGCATAGCTCTTGCATGCTGAGTTCGAGCTACAGTGGG
GCAATTCCTATCAAGATGCAGTCGATTCTCAGTGTCTAGGTAGAGTGCAG
TAGATAGCGTAGGTATATAGCACCTCCAACTTCGAATATAGTAATCATCT
CCAGGAATATATTGACAAGCGGGCACACAACATCGTAGAAAAGATGCAAT
CATGGTTGTGCCCACCTTGCCGCTCCAAATTGTTTCAAAACAGCGAAATC
ATGTGCCGCTGCGATCATTTTTTGCTTTCACCTATCGTAGCCCGAGCTGA
TGATAAAACCCCATATATCGTTCGGTCTCGACCTTGTACATAGAAAGGAG
AGGTCAATGGTGTCTTGACATTGGAATGAATTTTATCAAGTGTTCCCCGC
CCTTCAACTCCGTCGCCTTGTTCCGGCAGGCTGATACCAAACCAGGGTGC
GTGCTGCGACCGGCGAACGTGGTGGAGGTTTTGCAGCGCAAGCGAAACCT
GCTGACACAGGAGGACGTGGAGACGTGCAAGGGAGGGATGAACACTTGGG
GATTTGTCGGCGATCTCAACGACCACCCTCAGCTGTCGTGCGTGTACCAG
AGCGATGACGCACAGAACGAGTTCCTTAGTAATCCTAAGGTAAAAATCTC
CATCCTCAATCCCTATGATAGTGAGGGTCTCCGTCACGTGGGTTTTCTGT
TATTCATTAGCGGCATGCTGCTGCTTTCACGGACCCATAGCTGAGAGTGG
AGCGTGGATCCGAGGCTGCATAATTTTCTATAGATTTAGTAGATTTGTCT
CAACTGCTCGCCCTCCGTCCCGACGTTATAGCGAATAAAGGCTCGCTTTA
TTACACTTTCCGGGTCGATTGGTGTACGACTATGACATGTCGAAAATATA
CAACCACACCTTAAAAAAGGAACGAAAAGCTTGGAGCGCATGCAATGCTG
CGCCTCATTTTGGTTCATGATTTGAGTGATGTACTCACAGCCACCCTACT
AGCACGTGTCAGAGTTGTTATATTCACGAAAGTGCAGGTTTACTATAAGT
TCTTCGCCGTCTTGGCATTATAACGCCCCTCCCCTCTGCACCCCTCGCCC
CCCTCCAAATTCGTCTTCGCAAACGCCCTTGCAGTATGGATTAGGAGAAG
ACGTTTATGACGACGATCGAGCTGCGGCGGCGAAGAAGGCAGGACCGCAG
CAACCCGCCAATGGTCCCAGAGTCATGGCGAACACCGTCAAAACAGAGAG
GGTAGATATGTAACGATAAGGTTATTGTGTTCTAGTCAACCCGTTTGAAG
TGATGGGTAGATTTGTTAGATGGGCGGTTTACGAGGCAGTTCGAGGCATG
GTATGACGTCCTGGGCCTCTCCCCCTGGCAGACCCACTTGTATCTAAATA
CGAGTCGAACGGTAAACAGGCGAGGTGGGGAAAGGGAGGGATACGCCATG
GAAGTGCACAGTGCGTCATGTCCAGAGCACCACTTTCAGATTATGCATCT
ACCGTAGAGTACGGAAGCACCGTAGCAAACGCTGTGTGAAAATTGTTGTT
AGTCATATCGTTGTGTTTTTTCGAACAAGAGATTATTTTTGGGTCCCTCG
AGAAGGAAGCAGTATCGCCATCCACCTGGTCAGTCATACCTTGGCAGCCC
CGACCGAGGGGTACGCTAACGTAAACCTCGAAGCATTTGTACCCCCGCTC
CCCACCGGCCGTCGCTACTGACAACAACATACGCCCTTTCGATGAAATTC
AATGTATATTATGGATACCGTTGTCTTCGATGGGCATGTTGCCGGGTTTT
TGATTGAGGGAGCTATGCTGCTACTCACACTGGTTGATGCACTTCCTTCC
CAACTGACAGTAGCTTCGACTGAAAAGACGTCGATCACCCAGGAGGGTTG
ATTCATGTCTGGGCGGGATTTGAGCGTGAAACGTGGTTGAAGGAACTACA
TTCTTACAGGGGACACGATACAGGGGAAACCGGTTTAACGCCCTGAGCGG
TTACTGTATAGAGGCAGCGTATTCAGTCAAGTTTCCCTCCTTAGTCTTTG
GAAATTGCCTCATCATCTCTGTCTTCGAAAACGAAGGACAACTTGACTCT
TATGCGTAATATTTGTTGCCGTGATTTCCCGTTCCTCGTTTTCCCCCTCT
TTTTGTCGTACAATGTATATGGACGGAGCAGATAGAAATCAAAATGCTTT
TCCCTCAGAGAACTTCGTGGACAAAATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1243:2596..7775+

>mRNA_H-paniculata_contig1243.1523.1 ID=mRNA_H-paniculata_contig1243.1523.1|Name=mRNA_H-paniculata_contig1243.1523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1992bp|location=Sequence derived from alignment at H-paniculata_contig1243:2596..7775+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGTACTCTGGGGAAGTTCTTGCGGCTCGCGGGGTACTGGCGGGCTT
CATGGTTGTTCAGATGAGGTACTCTGGGGAAGTTCTTGCGGCTCGCGGGG
TACTGGCGGGCTTCATGGTTGTTCAGACGGCAGGTTTCGTGTGCCCGCAC
ACGTCTCTTGCTATTTCTACACCGAGCCGAATTTGCGTCTCCTCATCTAC
CTTTTTCACATCGGTATCGACAGTTTCACATCGAGGTCGAATTTTTGCTC
CTCCAAGCACGCTGCCCTCAGCGGCAACACCGCCACGAAATCGCAGCGGA
CGCCCAGGGAGGCGACCAGGCGGTGCGCTACGGGCTCGCCGACCCTTGTC
CCGACGAGATGACTACGATGACGGGCTAGACGCCGATTTTGATGATGACT
ACTTTTATGACGAGGATGAGCTTATGGGCGGGCGGGGGGTGCCGCCTATC
GGTGGGCGGCGACAGAGGAAGTCGAAGGTGTCGCTATTGCCCTCTCAGAT
AAGCAAGACGGCAGGTTTCGTGTGCCCGCACACGTCTCTTGCTATTTCTA
CACCGAGCCGAATTTGCGTCTCCTCATCTACCTTTTTCACATCGGTATCG
ACAGTTTCACATCGAGGTCGAATTTTTGCTCCTCCAAGCACGCTGCCCTC
AGCGGCAACACCGCCACGAAATCGCAGCGGACGCCCAGGGAGGCGACCAG
GCGGTGCGCTACGGGCTCGCCGACCCTTGTCCCGACGAGATGACTACGAT
GACGGGCTAGACGCCGATTTTGATGATGACTACTTTTATGACGAGGATGA
GCTTATGGGCGGGCGGGGGGTGCCGCCTATCGGTGGGCGGCGACAGAGGA
AGTCGAAGGTGTCGCTATTGCCCTCTCAGATAAGCAAGGCTCTTGTAGCA
GGCGTGTTTGTGCTGGGGATCGGCACGGGGGTGACGGTAGACTCGGCGAT
CAACACCGACCCGCGTGACCTGGCGAGCCGTGACGCGATTGACCGCAACG
CGCCCAACCCTAACATCTGCCAGACTTACGGTTCCAGTGCGATGGTGGTG
GACCAACGGGTGTTCGTCACGTTCAACCCGTTCAGCCTGCACGTATCGCA
GGCTCTTGTAGCAGGCGTGTTTGTGCTGGGGATCGGCACGGGGGTGACGG
TAGACTCGGCGATCAACACCGACCCGCGTGACCTGGCGAGCCGTGACGCG
ATTGACCGCAACGCGCCCAACCCTAACATCTGCCAGACTTACGGTTCCAG
TGCGATGGTGGTGGACCAACGGGTGTTCGTCACGTTCAACCCGTTCAGCC
TGCACGTATCGCAGGCTGATACCAAACCAGGGTGCGTGCTGCGACCGGCG
AACGTGGTGGAGGTTTTGCAGCGCAAGCGAAACCTGCTGACACAGGAGGA
CGTGGAGACGTGCAAGGGAGGGATGAACACTTGGGGATTTGTCGGCGATC
TCAACGACCACCCTCAGCTGTCGTGCGTGTACCAGAGCGATGACGCACAG
AACGAGTTCCTTAGTAATCCTAAGGCTGATACCAAACCAGGGTGCGTGCT
GCGACCGGCGAACGTGGTGGAGGTTTTGCAGCGCAAGCGAAACCTGCTGA
CACAGGAGGACGTGGAGACGTGCAAGGGAGGGATGAACACTTGGGGATTT
GTCGGCGATCTCAACGACCACCCTCAGCTGTCGTGCGTGTACCAGAGCGA
TGACGCACAGAACGAGTTCCTTAGTAATCCTAAGTATGGATTAGGAGAAG
ACGTTTATGACGACGATCGAGCTGCGGCGGCGAAGAAGGCAGGACCGCAG
CAACCCGCCAATGGTCCCAGAGTCATGGCGAACACCGTCAAAACAGAGAG
GGTAGATATGTAATATGGATTAGGAGAAGACGTTTATGACGACGATCGAG
CTGCGGCGGCGAAGAAGGCAGGACCGCAGCAACCCGCCAATGGTCCCAGA
GTCATGGCGAACACCGTCAAAACAGAGAGGGTAGATATGTAA
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