mRNA_H-paniculata_contig7242.15214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7242.15214.1
Unique NamemRNA_H-paniculata_contig7242.15214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7242.15214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7242contigH-paniculata_contig7242:3666..5015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size221
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7242.15214.1prot_H-paniculata_contig7242.15214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7242 3666..4998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.218094-CDS-H-paniculata_contig7242:3665..37151622930882.218094-CDS-H-paniculata_contig7242:3665..3715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7242 3666..3715 -
1691481494.8854387-CDS-H-paniculata_contig7242:3665..37151691481494.8854387-CDS-H-paniculata_contig7242:3665..3715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7242 3666..3715 -
1622930882.2404315-CDS-H-paniculata_contig7242:4352..44761622930882.2404315-CDS-H-paniculata_contig7242:4352..4476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7242 4353..4476 -
1691481494.894772-CDS-H-paniculata_contig7242:4352..44761691481494.894772-CDS-H-paniculata_contig7242:4352..4476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7242 4353..4476 -
1622930882.2617924-CDS-H-paniculata_contig7242:4968..49981622930882.2617924-CDS-H-paniculata_contig7242:4968..4998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7242 4969..4998 -
1691481494.9038935-CDS-H-paniculata_contig7242:4968..49981691481494.9038935-CDS-H-paniculata_contig7242:4968..4998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7242 4969..4998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930882.2841487-UTR-H-paniculata_contig7242:4998..50151622930882.2841487-UTR-H-paniculata_contig7242:4998..5015Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7242 4999..5015 -
1691481494.9132485-UTR-H-paniculata_contig7242:4998..50151691481494.9132485-UTR-H-paniculata_contig7242:4998..5015Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7242 4999..5015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7242.15214.1

>prot_H-paniculata_contig7242.15214.1 ID=prot_H-paniculata_contig7242.15214.1|Name=mRNA_H-paniculata_contig7242.15214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MAELRETQEKAEREDGLLAAQLAAEDVRLLEAERCASGARFANGRCAASV
GGGGGARAKGSGEGMGGS
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mRNA from alignment at H-paniculata_contig7242:3666..5015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7242.15214.1 ID=mRNA_H-paniculata_contig7242.15214.1|Name=mRNA_H-paniculata_contig7242.15214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig7242:3666..5015- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGCTTTACAAGCGCATGGCTGAGCTCCGAGAAACCCAAGAGAAGGTG
AAGTGAAGTCTATCTCGTACTGTACGTGCATCGTACCACCTTGTAAAATG
AGAGTGGCGTGCATGTATTTTATTGCAGTTGACCTTGAATATGATTGTGT
GACGGAGATTAGTGTACAAACGATTCTCCTGTTATGAGTAAAGTGTCCCA
GTTGCGTATGTCTTTTGGCAAGGACTTCACCATACTTTAGGCAGAGCGTG
CCAAGAAGAGAATATACATATAATAGAGCTATATAAAGCAAGCAATATGG
TAAATATGTGGTAAGGAAGAAATGTTGGCACCACGAGGCGGGTGGGGTAC
GAAGGCTTTAGACGACCATAGAGTTCTACAGTAGTCCAGACGAGTGTTTT
TGTCACCGTTTACATACCCTCAATTTTCTTTCTGCTGTCTCAAAGGCACG
ACATGCGCTAAAATGCTCATGTTGTTGCCTGAATATCCATCCATCCAATC
AACCATTCGTTACTGTTGCACTGATCTGTGTTCGACCAGGCCGAGAGAGA
AGACGGCCTGCTGGCTGCGCAGCTGGCCGCGGAAGATGTCCGGTTATTAG
AGGCTGAGCGTTGTGCGTCCGGGGCTAGGTTCGCAAACGGGCGGTGCGCA
GCCAGTGTCGGTGGTGAGCTTGTGAACATGGAAGAAGCAGTAGGCAGTAG
GCAGCAAGCAGCAAGTACAGGAGTTTGTATGTCTATATGCATGGAACGAC
CTGTACTTCTACCGCGCTAAGCCCACCAAGCCCCAGCTGTTGTGATACGT
CTGATACCCTGTCTCGTTTTGCAAGGCTGTGCAGCCCTTTCTGCAGGTCA
AGACGATCAATTCCCATACTTGCGCCTTATATGCATAGTCACGACTGCTT
ACTAAATAGTTACTGTATTGATGAAATAGTACATGGCTTGGGATGATTCA
GGAAGGGACGGAAGTGTATCTAGAGTAAGAGGACACGACGTCTGGAGGGG
ACGGCAGGGGTTCATCCCTTGCCTGCCCTGGAAGCTTAGAGCTTAAAGCT
TGAAGCTTGTCCATGGAAAACCTAAGCCACCACAACATTGTGTGCTTTAG
CTCTATTATATTATAGGGCTTCCCCCTGCTGTATATATTTGTTGGTCTCG
GCATTTGCGATAATCATATTCCGAGGCTGCACGGATTCGCCAACTTTGCA
ACCTTCGGCGTTATGTGTGTTTTAATCGTAGCTGCTAGAACATTAATAAT
AGCTGGGTATTTTTGCTTGCGGGTTGTACTTGCGATGTCTAATAAATCAG
GAGGTGGGGGCGCGAGAGCCAAGGGGTCAGGCGAGGGTATGGGCGGATCT
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Coding sequence (CDS) from alignment at H-paniculata_contig7242:3666..5015-

>mRNA_H-paniculata_contig7242.15214.1 ID=mRNA_H-paniculata_contig7242.15214.1|Name=mRNA_H-paniculata_contig7242.15214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig7242:3666..5015- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGAGCTCCGAGAAACCCAAGAGAAGATGGCTGAGCTCCGAGAAAC
CCAAGAGAAGGCCGAGAGAGAAGACGGCCTGCTGGCTGCGCAGCTGGCCG
CGGAAGATGTCCGGTTATTAGAGGCTGAGCGTTGTGCGTCCGGGGCTAGG
TTCGCAAACGGGCGGTGCGCAGCCAGTGTCGGTGGCCGAGAGAGAAGACG
GCCTGCTGGCTGCGCAGCTGGCCGCGGAAGATGTCCGGTTATTAGAGGCT
GAGCGTTGTGCGTCCGGGGCTAGGTTCGCAAACGGGCGGTGCGCAGCCAG
TGTCGGTGGAGGTGGGGGCGCGAGAGCCAAGGGGTCAGGCGAGGGTATGG
GCGGATCTGAGGTGGGGGCGCGAGAGCCAAGGGGTCAGGCGAGGGTATGG
GCGGATCT
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